View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_high_30 (Length: 222)
Name: NF13214_high_30
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 37 - 178
Target Start/End: Complemental strand, 5563533 - 5563392
Alignment:
| Q |
37 |
gaaatagaaagtactttccttggttgttgaagcaagatcctgagtgcagagaaagacttgagcaatttttccatcagctctccttccttgttgaagaact |
136 |
Q |
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| T |
5563533 |
gaaatagaaagtactttccttgtttgttgaagcaagatcctgagtgcagagaaagacttgagcaatttttccatcagctctccttccttgttgaagaact |
5563434 |
T |
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| Q |
137 |
tgaagagtgtgttacaccagctcaaaatggtctctacgatcc |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
5563433 |
tgaagagtgtgttacaccagctcaaaatggtctctacgatcc |
5563392 |
T |
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