View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13214_high_32 (Length: 214)

Name: NF13214_high_32
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13214_high_32
NF13214_high_32
[»] chr3 (7 HSPs)
chr3 (13-127)||(4582594-4582708)
chr3 (13-126)||(4614258-4614372)
chr3 (126-195)||(4582435-4582504)
chr3 (44-112)||(46469625-46469693)
chr3 (52-105)||(51942045-51942098)
chr3 (44-112)||(5155203-5155271)
chr3 (71-123)||(46478252-46478304)
[»] chr8 (2 HSPs)
chr8 (54-102)||(9693498-9693546)
chr8 (50-96)||(9677763-9677809)
[»] chr4 (2 HSPs)
chr4 (50-112)||(35154069-35154131)
chr4 (44-112)||(35160454-35160522)


Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 4582708 - 4582594
Alignment:
Q  13 gaaaagaatgatacttgaaacaatcagtaaacaaacaaaagtttccctcagaatcgccaaacatctcttctcaaaagaatcagataagaacattgtgttt 112  Q
    ||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  4582708 gaaaagaatgatacttgaatcaatcactaaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttt 4582609  T
Q  113 cccccactttcgctc 127  Q
     ||||||||||||||    
T  4582608 tccccactttcgctc 4582594  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 4614372 - 4614258
Alignment:
Q  13 gaaaagaatgatacttgaaacaatcagtaaacaaacaaaagtttccctcagaatcgccaaacatctcttctcaaaagaatcagataagaacattgtg-tt 111  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||    
T  4614372 gaaaagaatgatacttgaaacaatcagtaaccagacaaaagtttccctcagaatcgccaaacatcttttctcaaaagaatcagagaagaacattgtgttt 4614273  T
Q  112 tcccccactttcgct 126  Q
    | |||||||||||||    
T  4614272 ttccccactttcgct 4614258  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 4582504 - 4582435
Alignment:
Q  126 tctcaactcctttgcctctcgtctcgtttctgccatcctctccaacgctgctccatccggtggtccttgc 195  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||| |||||||| |||||||||||||||    
T  4582504 tctcaactcctttgcttctcatctcgtttctgccatcatctccaatgctgctccctccggtggtccttgc 4582435  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 46469625 - 46469693
Alignment:
Q  44 caaacaaaagtttccctcagaatcgccaaacatctcttctcaaaagaatcagataagaacattgtgttt 112  Q
    ||||| ||||||||||| |  || ||||||||||||||||||||||||||||| |||||| ||||||||    
T  46469625 caaaccaaagtttcccttaacatggccaaacatctcttctcaaaagaatcagacaagaacgttgtgttt 46469693  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 51942045 - 51942098
Alignment:
Q  52 agtttccctcagaatcgccaaacatctcttctcaaaagaatcagataagaacat 105  Q
    ||||||||||||||||||||||||| | ||||||||| ||||||| || |||||    
T  51942045 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacat 51942098  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 5155203 - 5155271
Alignment:
Q  44 caaacaaaagtttccctcagaatcgccaaacatctcttctcaaaagaatcagataagaacattgtgttt 112  Q
    |||||||| ||||||||  | |||||||||||||| ||||  ||||||| ||| |||||||||||||||    
T  5155203 caaacaaatgtttccctacgcatcgccaaacatctgttcttgaaagaattagacaagaacattgtgttt 5155271  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 46478252 - 46478304
Alignment:
Q  71 aaacatctcttctcaaaagaatcagataagaacattgtgtttcccccactttc 123  Q
    |||||||||||||| ||||||||||| || ||||| |||||| | ||||||||    
T  46478252 aaacatctcttctccaaagaatcagacaacaacatcgtgttttctccactttc 46478304  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 9693546 - 9693498
Alignment:
Q  54 tttccctcagaatcgccaaacatctcttctcaaaagaatcagataagaa 102  Q
    |||||||||  |||||||||||||||||||||||||||||||| |||||    
T  9693546 tttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaa 9693498  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 9677809 - 9677763
Alignment:
Q  50 aaagtttccctcagaatcgccaaacatctcttctcaaaagaatcaga 96  Q
    |||||||||||||   |||||||||||||||||||||||||||||||    
T  9677809 aaagtttccctcacggtcgccaaacatctcttctcaaaagaatcaga 9677763  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 35154069 - 35154131
Alignment:
Q  50 aaagtttccctcagaatcgccaaacatctcttctcaaaagaatcagataagaacattgtgttt 112  Q
    |||||||||||||  |||||||||||||| |||||||| |||||||| ||||| || ||||||    
T  35154069 aaagtttccctcactatcgccaaacatcttttctcaaaggaatcagaaaagaatatcgtgttt 35154131  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 35160454 - 35160522
Alignment:
Q  44 caaacaaaagtttccctcagaatcgccaaacatctcttctcaaaagaatcagataagaacattgtgttt 112  Q
    ||||| |||||||| ||||  || | ||||||||||||||| ||||||||||| |||||||| ||||||    
T  35160454 caaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttt 35160522  T

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