View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_high_5 (Length: 561)
Name: NF13214_high_5
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 138 - 545
Target Start/End: Original strand, 2101063 - 2101491
Alignment:
| Q |
138 |
atgtgtagaaggattagtctatactttagaatataatgtctgatacgt----------------cagtatactgaccatagtctatgctcatcagtcacc |
221 |
Q |
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| T |
2101063 |
atgtgtagaaggattggtctatactttagaatataatgtctgatacgttgtagactgttgtaaacagtatactgaccatagtctatgctcatcagtcacc |
2101162 |
T |
|
| Q |
222 |
tttgtagtattttatatgaatgacaca--ttatcacacaggttcttt-acttaaaa--agcatctaaacggataagatttactgtagactgtaataaatc |
316 |
Q |
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| T |
2101163 |
tttgtagtatcttatatgaatgacacacattatcacacaacttcttttacttaaaaaaagcatctaaacggataagatttactgtagactgtaataaatc |
2101262 |
T |
|
| Q |
317 |
tgtagtttgtggtaataaatctgtaaccgtggcagtttacttttcaatcttcttcaataagtctcttcattttacttttgcattaaaaacggaaaataag |
416 |
Q |
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| T |
2101263 |
tgtagtttgtggtaataaatctgtaaccgtggcagtttacttttcaatcttcttcgataagtctcttcattttacttttgcattaaaaacggaaaataag |
2101362 |
T |
|
| Q |
417 |
agatattttcttgctaaaacgattctaatatctgcctataaatagtactagtagttaccctgatcgaaaatcacataagcatttgagcaaaaacagaaaa |
516 |
Q |
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| T |
2101363 |
acatattttcttgctaaaacgattctaatatctgcctataaatagtactagtagttaccctgatcgaaaatcacataagcatttgagcaaaaacataaaa |
2101462 |
T |
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| Q |
517 |
agagtagaaaaatcatgagtcgtggaaac |
545 |
Q |
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| T |
2101463 |
agagtagaaaaatcatgagtcgtggaaac |
2101491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 2100895 - 2100997
Alignment:
| Q |
39 |
atatttgatttacgtacaaaaatattcaatgtctaatatcctgtaaattgtagcatacaatatacaaaccattcaatcattctagtcttcaatgattgaa |
138 |
Q |
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||||||| ||||| |||||||||||| || |||| |||| ||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |
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| T |
2100895 |
atatttggtttacatacaaaaatattgaacgtctgatatgctggaaattgtagcatacaatatacaaacgattcaatcattgttgtcttcaatgattgaa |
2100994 |
T |
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| Q |
139 |
tgt |
141 |
Q |
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||| |
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| T |
2100995 |
tgt |
2100997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 438 - 545
Target Start/End: Complemental strand, 39185797 - 39185690
Alignment:
| Q |
438 |
attctaatatctgcctataaatagtactagtagttaccctgatcgaaaatcacataagcatttgagcaaaaacagaaaaagagtagaaaaatcatgagtc |
537 |
Q |
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| T |
39185797 |
attctaatatctgcctataaatagtattagtacttaccctaatcgaaaatcacaaaagcatttgagcaaaaacagaaaaagagtagaaaaatcatgagtc |
39185698 |
T |
|
| Q |
538 |
gtggaaac |
545 |
Q |
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| T |
39185697 |
gtggaaac |
39185690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 39186883 - 39186777
Alignment:
| Q |
198 |
catagtctatgctcatcagtcacctttgtagtattttatatgaatgacacattatcacacaggttc-tttactt-aaaaagcatctaaacggataagatt |
295 |
Q |
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|||||||||||||||| ||||||||||| ||||| |||| ||||||||||| ||||||||| |||| ||||||| |||||| |||||||| |||| |||| |
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| T |
39186883 |
catagtctatgctcatgagtcacctttgcagtatcttat-tgaatgacacagtatcacacaagttcttttacttaaaaaagaatctaaacagataggatt |
39186785 |
T |
|
| Q |
296 |
tactgtag |
303 |
Q |
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|||||||| |
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| T |
39186784 |
tactgtag |
39186777 |
T |
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