View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13214_high_6 (Length: 528)

Name: NF13214_high_6
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13214_high_6
NF13214_high_6
[»] chr8 (8 HSPs)
chr8 (2-500)||(29894103-29894598)
chr8 (385-470)||(42739380-42739465)
chr8 (385-502)||(2349663-2349780)
chr8 (412-498)||(30436510-30436597)
chr8 (412-498)||(35813479-35813566)
chr8 (388-472)||(15243774-15243858)
chr8 (388-499)||(9201083-9201194)
chr8 (412-473)||(3940669-3940731)
[»] chr2 (17 HSPs)
chr2 (2-462)||(38570685-38571152)
chr2 (411-470)||(38838089-38838148)
chr2 (389-472)||(15614178-15614261)
chr2 (385-469)||(9470828-9470912)
chr2 (412-499)||(21747390-21747478)
chr2 (412-498)||(25096278-25096365)
chr2 (385-470)||(5271075-5271160)
chr2 (412-498)||(15560618-15560705)
chr2 (433-498)||(40000859-40000925)
chr2 (411-472)||(17071264-17071325)
chr2 (389-470)||(42730743-42730824)
chr2 (412-499)||(29201458-29201546)
chr2 (411-470)||(17077336-17077395)
chr2 (412-496)||(4564894-4564979)
chr2 (439-471)||(17088291-17088323)
chr2 (385-469)||(17920791-17920875)
chr2 (411-498)||(26556534-26556622)
[»] chr1 (14 HSPs)
chr1 (31-175)||(30533743-30533887)
chr1 (224-473)||(30533393-30533645)
chr1 (385-498)||(31489521-31489635)
chr1 (412-498)||(43781214-43781301)
chr1 (412-498)||(12745551-12745638)
chr1 (412-498)||(12756540-12756627)
chr1 (412-498)||(33189000-33189087)
chr1 (412-498)||(42763296-42763383)
chr1 (411-498)||(32057530-32057618)
chr1 (412-498)||(9660870-9660957)
chr1 (412-498)||(45757285-45757372)
chr1 (385-470)||(46237614-46237699)
chr1 (433-498)||(47188630-47188695)
chr1 (385-470)||(48470447-48470532)
[»] chr6 (9 HSPs)
chr6 (385-499)||(20139187-20139302)
chr6 (385-499)||(22193567-22193682)
chr6 (388-498)||(31655552-31655663)
chr6 (411-470)||(31472533-31472592)
chr6 (385-498)||(12272227-12272341)
chr6 (385-471)||(27966772-27966858)
chr6 (412-500)||(15065899-15065988)
chr6 (385-462)||(3044290-3044367)
chr6 (385-451)||(17869282-17869348)
[»] chr3 (20 HSPs)
chr3 (386-498)||(42854312-42854425)
chr3 (389-470)||(24310804-24310885)
chr3 (385-473)||(33982991-33983079)
chr3 (385-472)||(2869006-2869093)
chr3 (385-498)||(6888742-6888856)
chr3 (385-498)||(19975754-19975868)
chr3 (412-498)||(21075933-21076020)
chr3 (412-498)||(43746329-43746416)
chr3 (28-79)||(22036846-22036897)
chr3 (28-79)||(22107034-22107085)
chr3 (28-79)||(22117414-22117465)
chr3 (16-79)||(30987365-30987428)
chr3 (411-473)||(27969472-27969534)
chr3 (415-472)||(20510582-20510639)
chr3 (415-498)||(43735958-43736042)
chr3 (415-498)||(46311832-46311916)
chr3 (258-315)||(30987960-30988018)
chr3 (385-470)||(50737961-50738046)
chr3 (385-470)||(50774808-50774893)
chr3 (412-498)||(46219071-46219159)
[»] chr7 (16 HSPs)
chr7 (385-498)||(7505211-7505325)
chr7 (385-472)||(35709894-35709981)
chr7 (385-473)||(47381498-47381586)
chr7 (412-498)||(1873610-1873697)
chr7 (412-498)||(23025136-23025223)
chr7 (385-472)||(31272137-31272224)
chr7 (412-498)||(39494092-39494179)
chr7 (389-469)||(33604559-33604639)
chr7 (388-498)||(41200197-41200308)
chr7 (385-467)||(17511322-17511404)
chr7 (385-467)||(17541810-17541892)
chr7 (412-473)||(10993186-10993247)
chr7 (142-182)||(871435-871475)
chr7 (142-182)||(1232712-1232752)
chr7 (412-498)||(16526162-16526249)
chr7 (411-460)||(2621484-2621533)
[»] chr4 (20 HSPs)
chr4 (389-498)||(32594018-32594128)
chr4 (388-473)||(3415234-3415319)
chr4 (385-470)||(32767585-32767670)
chr4 (414-498)||(41361232-41361317)
chr4 (385-470)||(43286280-43286365)
chr4 (412-498)||(47295539-47295626)
chr4 (411-470)||(52464140-52464199)
chr4 (389-498)||(19240744-19240854)
chr4 (412-500)||(39345804-39345893)
chr4 (412-499)||(20034343-20034431)
chr4 (412-503)||(27869992-27870084)
chr4 (412-498)||(17543722-17543809)
chr4 (385-499)||(51401360-51401475)
chr4 (392-498)||(9455362-9455469)
chr4 (412-498)||(45522475-45522562)
chr4 (385-498)||(34030272-34030385)
chr4 (385-498)||(44341168-44341282)
chr4 (415-499)||(54134540-54134625)
chr4 (412-499)||(951347-951435)
chr4 (385-470)||(1705225-1705309)
[»] chr5 (20 HSPs)
chr5 (411-470)||(38976290-38976349)
chr5 (414-499)||(74952-75038)
chr5 (413-498)||(37206082-37206168)
chr5 (412-498)||(38356068-38356155)
chr5 (411-473)||(1398402-1398465)
chr5 (412-498)||(6238156-6238243)
chr5 (412-498)||(6899866-6899953)
chr5 (412-498)||(6955834-6955921)
chr5 (412-498)||(10642088-10642175)
chr5 (412-498)||(35038795-35038882)
chr5 (412-498)||(35838081-35838168)
chr5 (412-498)||(21731688-21731775)
chr5 (412-498)||(24477257-24477344)
chr5 (412-498)||(42860358-42860445)
chr5 (412-473)||(9996240-9996301)
chr5 (412-495)||(4699973-4700057)
chr5 (385-473)||(33908144-33908232)
chr5 (406-466)||(42092568-42092628)
chr5 (388-498)||(20338527-20338638)
chr5 (447-498)||(1845416-1845468)
[»] scaffold1449 (1 HSPs)
scaffold1449 (439-498)||(1617-1677)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 2 - 500
Target Start/End: Original strand, 29894103 - 29894598
Alignment:
Q  2 agttgttttcacagctcataacaggtgatgttgagttgaaataataaagcatataacagaagaaaaataaaacttgtannnnnnnn--agaggataaatc 99  Q
    ||||||||||||| |||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||    
T  29894103 agttgttttcacaactcataattggcgatgttgagttgaaataataaagcatataacagaagaaaaataaaacttgtattttttttttagaggataaatc 29894202  T
Q  100 ttatattttgatgacttaacactaaatatttaatgtctataaaaatagaaaacagtaaatatcaataccatgaataaatttaagaaagaaaacgcaagcc 199  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  29894203 ttatattttgacgacttaacactaaatatttaatgtctataaaaatagaaaacaataaatatcaataccatgaataaatttaagaaagaaaaagcaagcc 29894302  T
Q  200 ttttttccactgcgaatgataaatatgatttctaactccttgatctttgaatgatattttcaacctcaacacaacaggatttgaagctctaacgtccact 299  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      |||| ||||||||||||||||||||||||||||||    
T  29894303 ttttttccactgcgaatgataaatatgatttctaacttcttgatctttgaatgatattt------tcaaaacaacaggatttgaagctctaacgtccact 29894396  T
Q  300 atggcaacttctgtagtctcccagatagtttaactttttctttttcccgggctgctcgtagcccaaacaggtaactggnnnnnnngggccgggctaaaaa 399  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| |||  || |||  |       || ||||||||||||    
T  29894397 atggcaacttctgtagtctcccatatagtttaactttttctttttcccaggctgcccgtagcctaaatgggcaaccagctttttcggaccgggctaaaaa 29894496  T
Q  400 accctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattcga-ctggcccattttgacagctcta 498  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | | |||||||||| |||||||    
T  29894497 atcctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggcttttgggccggcccattcgacccgacccattttgatagctcta 29894596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 42739380 - 42739465
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    ||||||||||||||| ||||| |   ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  42739380 gggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggccc 42739465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 502
Target Start/End: Complemental strand, 2349780 - 2349663
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattcga-ctggccc 483  Q
    ||||||||||||||| |||||||   ||||| ||||||||| || || ||| | ||||| |||||||||||||||||||| ||||| | ||| | |||||    
T  2349780 gggccgggctaaaaagccctgaaaa-attcgagctgcaattattcggcccaggccctacattttattcgggctttcgggctggcccgtacgacccggccc 2349682  T
Q  484 attttgacagctctaaaca 502  Q
    |||||||||||||||||||    
T  2349681 attttgacagctctaaaca 2349663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 30436510 - 30436597
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  30436510 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 30436597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 35813479 - 35813566
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  35813479 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 35813566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 472
Target Start/End: Complemental strand, 15243858 - 15243774
Alignment:
Q  388 ccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat 472  Q
    |||||||||||| |||||||   ||||||||||||||| || || ||| | ||||| ||||| || |||||||||||||||||||    
T  15243858 ccgggctaaaaagccctgaaagaattcgggctgcaattattcggcccaggccctacattttactcaggctttcgggccggcccat 15243774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 499
Target Start/End: Complemental strand, 9201194 - 9201083
Alignment:
Q  388 ccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattcgactggcccattt 487  Q
    |||||||||||| | |||||   |||| |||||||||| || || ||||  |||||||||||||||| |||||||||||| ||||  | | ||||| |||    
T  9201194 ccgggctaaaaagctctgaaagaattcaggctgcaattattcggcccaaaccctacgttttattcggactttcgggccggtccatatggccggcccgttt 9201095  T
Q  488 tgacagctctaa 499  Q
    ||||| ||||||    
T  9201094 tgacaactctaa 9201083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 473
Target Start/End: Complemental strand, 3940731 - 3940669
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttc-gggccggcccatt 473  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||| |||||||||||||    
T  3940731 ttcgggctccaattattcggcccaagccctacattttattcgggctttcggggccggcccatt 3940669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 2 - 462
Target Start/End: Complemental strand, 38571152 - 38570685
Alignment:
Q  2 agttgttttcacagctcataacaggtgatgttgagttgaaataataaagcatataacagaagaaaaataaaacttgtannnnnnnnagaggataaatctt 101  Q
    |||||||||| ||||||||||  || |||||||||||||||||||||||||||||||| ||||| |||||||||||||        ||||||||||||||    
T  38571152 agttgttttcccagctcataattggcgatgttgagttgaaataataaagcatataacaaaagaagaataaaacttgtaacttttttagaggataaatctt 38571053  T
Q  102 atattttgatgacttaacactaaatatttaatgtctataaaaatagaaaacagtaaatatcaataccatgaataaatttaagaaagaaaacgcaagcctt 201  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  38571052 atattttgatgacttaacactaaatatttaatgtctataaaagtagaaaacaataaatatcaataccatgaataaatttaaggaagaaaaagcaagcctt 38570953  T
Q  202 ttttccactgcgaatgataaatatgatttctaactccttgatctttgaatgatattttcaacctcaacacaacaggatttgaagctctaacgtccactat 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  38570952 ttttccactgcgaatgataaatatgatttctaactccttgatctttgaatgatattttcaacctcagcacaacaggatttgaagctctaaagttcactat 38570853  T
Q  302 ggcaacttctgtagtctcccagatagtttaa--ctttttctttttcc--------cgggctgctcgtagcccaaacaggtaactggnnnnnnngggccgg 391  Q
    ||||||||||||||||||||||||||| |||   |||||||||||||        ||||| || |||||||||||| |||||  ||       || ||||    
T  38570852 ggcaacttctgtagtctcccagatagtgtaagtttttttctttttcccgagctgtcgggccgcccgtagcccaaacgggtaaagggttttttcggaccgg 38570753  T
Q  392 gctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgg 462  Q
    |||||||| || ||| |||||||||||||||||||||||| ||||| ||||   |||||||||||||||||    
T  38570752 gctaaaaagccttgagtttattcgggctgcaatttttaggcccaagcccta---tttattcgggctttcgg 38570685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 411 - 470
Target Start/End: Original strand, 38838089 - 38838148
Alignment:
Q  411 attcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  38838089 attcggactgcaatttttaggcccaagccctacgttttattcgggctttcgggccggccc 38838148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 472
Target Start/End: Original strand, 15614178 - 15614261
Alignment:
Q  389 cgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat 472  Q
    ||||||||||| ||||| |   ||||||||||||||| ||||| ||||| ||||  ||||||||||||||||||||||||||||    
T  15614178 cgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctatattttattcgggctttcgggccggcccat 15614261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 385 - 469
Target Start/End: Complemental strand, 9470912 - 9470828
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcc 469  Q
    ||||||||||||||| |||||||   ||||||||||| |||| | || ||||  ||||| |||||||||||||||||||||||||    
T  9470912 gggccgggctaaaaagccctgaaaaaattcgggctgctatttatcggcccaaaccctacattttattcgggctttcgggccggcc 9470828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 499
Target Start/End: Complemental strand, 21747478 - 21747390
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctctaa 499  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | |||||||||||||||||||||    
T  21747478 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctctaa 21747390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 25096365 - 25096278
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  25096365 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 25096278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 470
Target Start/End: Complemental strand, 5271160 - 5271075
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    |||||||||||||||  |||| |   ||||||||| |||||||| || ||||| ||| | ||||||||||||||||||||||||||    
T  5271160 gggccgggctaaaaagtcctggaaaaattcgggctccaatttttcggcccaagccctgcattttattcgggctttcgggccggccc 5271075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 15560618 - 15560705
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | |||| |||||||||||||||    
T  15560618 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcctattttgacagctcta 15560705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 498
Target Start/End: Original strand, 40000859 - 40000925
Alignment:
Q  433 ccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  40000859 ccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 40000925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 472
Target Start/End: Original strand, 17071264 - 17071325
Alignment:
Q  411 attcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat 472  Q
    |||||||||| |||| ||| | ||||  ||||| ||||||||||||||||||||||||||||    
T  17071264 attcgggctgaaattattaagcccaaaccctacattttattcgggctttcgggccggcccat 17071325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 470
Target Start/End: Original strand, 42730743 - 42730824
Alignment:
Q  389 cgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    ||||||||||| |||||||   ||||||||||| ||| || || ||||| ||| | |||||||||||||||||| |||||||    
T  42730743 cgggctaaaaagccctgaaaaaattcgggctgctattattcggcccaagccctgcattttattcgggctttcggcccggccc 42730824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 499
Target Start/End: Original strand, 29201458 - 29201546
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctctaa 499  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||| ||||||| | | | | | |||||||||||||||||||    
T  29201458 ttcgggctccaattattcggcccaagccctacattttattcgggctttcggcccggcccttacggcccgacccattttgacagctctaa 29201546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 470
Target Start/End: Original strand, 17077336 - 17077395
Alignment:
Q  411 attcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    |||||||||| |||| ||| | ||||  ||||| ||||||||||||||||||||||||||    
T  17077336 attcgggctgaaattattaagcccaaaccctacattttattcgggctttcgggccggccc 17077395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 496
Target Start/End: Complemental strand, 4564979 - 4564894
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat-tcgactggcccattttgacagctc 496  Q
    ||||||||||||||||||||  |||| ||||| ||||||||| || ||| |||||| |||| | | | ||||| ||||||||||||    
T  4564979 ttcgggctgcaatttttaggcacaagccctacattttattcgagcgttcaggccggtccatatgggccggcccgttttgacagctc 4564894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 471
Target Start/End: Original strand, 17088291 - 17088323
Alignment:
Q  439 cctacgttttattcgggctttcgggccggccca 471  Q
    ||||| |||||||||||||||||||||||||||    
T  17088291 cctacattttattcgggctttcgggccggccca 17088323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 469
Target Start/End: Complemental strand, 17920875 - 17920791
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcc 469  Q
    ||||||||||||||| |||| ||   |||| |||||| |||| | || ||||  ||||| |||||||| ||||||||||||||||    
T  17920875 gggccgggctaaaaagccctaaaaaaattcaggctgctatttatcggcccaaaccctacattttattcaggctttcgggccggcc 17920791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 498
Target Start/End: Original strand, 26556534 - 26556622
Alignment:
Q  411 attcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattcg-actggcccattttgacagctcta 498  Q
    ||||| ||||||||| || || ||||| ||||| ||||| |||| ||||||||||||||| | ||  | ||||||||||||| ||||||    
T  26556534 attcgagctgcaattattcggcccaagccctacattttaatcggactttcgggccggcccgtacgtcccggcccattttgacggctcta 26556622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 30533887 - 30533743
Alignment:
Q  31 gttgagttgaaataataaagcatataacagaagaaaaataaaacttgtannnnnnnnagaggataaatcttatattttgatgacttaacactaaatattt 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||||||||||||||    
T  30533887 gttgagttgaaataataaagcatataacagaagaaaaataaaacttatatttttttgagaggataaatcttatattttgatgacttaacactaaatattt 30533788  T
Q  131 aatgtctataaaaatagaaaacagtaaatatcaataccatgaata 175  Q
    |||| ||||||||||| || |||||||||||||||||||| ||||    
T  30533787 aatgactataaaaatataacacagtaaatatcaataccataaata 30533743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 224 - 473
Target Start/End: Complemental strand, 30533645 - 30533393
Alignment:
Q  224 atgatttctaactccttgatctttgaatgatattttcaacctcaacacaacaggatttgaagctctaacgtccactatggcaacttctgtagtctcccag 323  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||| ||    
T  30533645 atgatttctaacttcttgatctttgaatgatattttcaacctcaacacaacaagatttgaagctctaaagtccactatggcaacttttgtagtctcctag 30533546  T
Q  324 atagtttaactttttctt--tttcccgggctgctcg---tagcccaaacaggtaactggnnnnnnngggccgggctaaaaaaccctgaatttattcgggc 418  Q
    ||||| ||| ||||| ||  |||| || | || |||   |||||||||| || ||| |        ||||||||||||||| |||  ||| ||| |||||    
T  30533545 atagtgtaagtttttttttctttctcgcgttg-tcgggctagcccaaacgggcaac-gagcttttcgggccgggctaaaaagcccataatctatccgggc 30533448  T
Q  419 tgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccatt 473  Q
    || |||||||||| ||||| ||||| |||||||||||||||||||||| ||||||    
T  30533447 tgtaatttttaggcccaagacctacattttattcgggctttcgggccgacccatt 30533393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 385 - 498
Target Start/End: Original strand, 31489521 - 31489635
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggccc 483  Q
    |||||||| |||||| ||| |||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||| ||||||||| | | |||||    
T  31489521 gggccgggttaaaaagcccggaatttattcgggctgtaatttttaggcccaagccctatgttttattcgggctttcgggctggcccattcggcccggccc 31489620  T
Q  484 attttgacagctcta 498  Q
     ||||||||||||||    
T  31489621 gttttgacagctcta 31489635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 43781214 - 43781301
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | ||||||||||||||||||||||    
T  43781214 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcctggcccattttgacagctcta 43781301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 12745638 - 12745551
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  12745638 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 12745551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 12756627 - 12756540
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  12756627 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 12756540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 33189087 - 33189000
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  33189087 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 33189000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 42763296 - 42763383
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  42763296 ttcgggcttcaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 42763383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 498
Target Start/End: Complemental strand, 32057618 - 32057530
Alignment:
Q  411 attcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    ||||||||| |||||||| || ||| | ||| ||||||||||||| |||||||||||||||| | | | | ||||||||||||||||||    
T  32057618 attcgggctccaatttttcggcccaggccctgcgttttattcgggatttcgggccggcccatacggcccgccccattttgacagctcta 32057530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 9660870 - 9660957
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| ||||||||||| |||||||||||||| | | | | ||||||||||||||||||||    
T  9660870 ttcgggctccaattattcggcccaagccctacattttattcgggatttcgggccggcccttacggcccggcccattttgacagctcta 9660957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 45757285 - 45757372
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | | ||||||||||||||||||    
T  45757285 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccgacccattttgacagctcta 45757372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 46237614 - 46237699
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    |||||| |||||||| ||||| |   ||||||||||||||| ||||| ||||| ||||  |||||||||||||||| || ||||||    
T  46237614 gggccgagctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctatattttattcgggctttcaggtcggccc 46237699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 498
Target Start/End: Original strand, 47188630 - 47188695
Alignment:
Q  433 ccaagtcctacgttttattcgggctttcgggccggcccattcgactggcccattttgacagctcta 498  Q
    ||||| ||||| |||||||||||||||| ||||||| | | || | ||||||||||||||||||||    
T  47188630 ccaagccctacattttattcgggctttcaggccggctcttacggccggcccattttgacagctcta 47188695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 48470447 - 48470532
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    |||||||||||||||  ||||||   ||||||||||| |||| | || |||   ||||| ||||||||||||||| ||||||||||    
T  48470447 gggccgggctaaaaagtcctgaaaaaattcgggctgctatttatcggcccagaccctacattttattcgggcttttgggccggccc 48470532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 385 - 499
Target Start/End: Complemental strand, 20139302 - 20139187
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggccc 483  Q
    ||||||||||||||| ||||| |   ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| | | | |||||    
T  20139302 gggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccatacgggcgggccc 20139203  T
Q  484 attttgacagctctaa 499  Q
     |||||||||||||||    
T  20139202 gttttgacagctctaa 20139187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 385 - 499
Target Start/End: Original strand, 22193567 - 22193682
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggccc 483  Q
    ||||||||||||||| ||||| |   ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| | | | |||||    
T  22193567 gggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccatacgggcgggccc 22193666  T
Q  484 attttgacagctctaa 499  Q
     |||||||||||||||    
T  22193667 gttttgacagctctaa 22193682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 388 - 498
Target Start/End: Original strand, 31655552 - 31655663
Alignment:
Q  388 ccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccatt 486  Q
    |||||||||||| ||| |||||||||||||||| |||||||||| ||||  |||| ||||||||||||||||||||| ||||||||| | | ||||| ||    
T  31655552 ccgggctaaaaagcccggaatttattcgggctgtaatttttaggcccaaaccctatgttttattcgggctttcgggctggcccattcggcccggcccgtt 31655651  T
Q  487 ttgacagctcta 498  Q
    ||||||||||||    
T  31655652 ttgacagctcta 31655663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 411 - 470
Target Start/End: Original strand, 31472533 - 31472592
Alignment:
Q  411 attcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  31472533 attcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggccc 31472592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 498
Target Start/End: Original strand, 12272227 - 12272341
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat-tcgactggccc 483  Q
    ||||||||||||||| |||||||   ||||||||||| |||| | || ||| | ||||| |||||||||||||||||||||||||| |   | | |||||    
T  12272227 gggccgggctaaaaagccctgaaaaaattcgggctgctatttatcggcccaggccctacattttattcgggctttcgggccggcccgtaaggcccggccc 12272326  T
Q  484 attttgacagctcta 498  Q
    |||||||||||||||    
T  12272327 attttgacagctcta 12272341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 27966772 - 27966858
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccca 471  Q
    ||||||||||||||| ||||| |   ||| ||||||||||| ||||| ||||| ||||| ||||| |||||||||||||||||||||    
T  27966772 gggccgggctaaaaagccctggaaaaatttgggctgcaattattaggcccaagccctacattttactcgggctttcgggccggccca 27966858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 500
Target Start/End: Complemental strand, 15065988 - 15065899
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctctaaa 500  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||| ||||||||||||||||||    
T  15065988 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggctcattttgacagctctaaa 15065899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 462
Target Start/End: Complemental strand, 3044367 - 3044290
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgg 462  Q
    |||||||||||||||||||||||   ||||||||||| ||| || || ||| | ||| | ||||||||||||||||||    
T  3044367 gggccgggctaaaaaaccctgaaaaaattcgggctgctattattcggcccaggccctgcattttattcgggctttcgg 3044290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 451
Target Start/End: Original strand, 17869282 - 17869348
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttatt 451  Q
    |||||||||||||||||||||||   |||||||||| |||||||  | ||||| |||| ||||||||    
T  17869282 gggccgggctaaaaaaccctgaaaaaattcgggctggaattttttagcccaagccctaagttttatt 17869348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 386 - 498
Target Start/End: Original strand, 42854312 - 42854425
Alignment:
Q  386 ggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattcga-ctggccca 484  Q
    |||||||||||||| || ||||   ||||||||| ||||| ||||| ||||| |||||||||||| ||||||||||||| ||||||| ||| | ||||||    
T  42854312 ggccgggctaaaaagccttgaaaaaattcgggctccaattattaggcccaagccctacgttttatgcgggctttcgggctggcccatacgagccggccca 42854411  T
Q  485 ttttgacagctcta 498  Q
    ||||||||||||||    
T  42854412 ttttgacagctcta 42854425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 389 - 470
Target Start/End: Complemental strand, 24310885 - 24310804
Alignment:
Q  389 cgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    |||||||||||| ||| ||   ||||||||||||||||||||||| ||  ||||||||||||||||| ||||||||||||||    
T  24310885 cgggctaaaaaatcctaaaaaaattcgggctgcaatttttaggtctaaaccctacgttttattcgggttttcgggccggccc 24310804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 473
Target Start/End: Complemental strand, 33983079 - 33982991
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccatt 473  Q
    ||||||||||||||| ||||| |   ||||||||| ||||| ||||| ||||| ||||| ||||||| |||||||||||||||||||||    
T  33983079 gggccgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctacattttatttgggctttcgggccggcccatt 33982991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 385 - 472
Target Start/End: Complemental strand, 2869093 - 2869006
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat 472  Q
    |||||||| |||||| |||| ||   ||||||||||||||||| ||| |||||  |||||||||||||||||||||||||| ||||||    
T  2869093 gggccgggttaaaaagccctaaagaaattcgggctgcaattttcaggcccaagctctacgttttattcgggctttcgggccagcccat 2869006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 498
Target Start/End: Original strand, 6888742 - 6888856
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggccc 483  Q
    ||||||||||||||| ||||| |   ||||||||| ||||| ||||| ||||| ||||  |||||| ||||||||||||||||||||| | | | |||||    
T  6888742 gggccgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctatattttatgcgggctttcgggccggcccatacgggccggccc 6888841  T
Q  484 attttgacagctcta 498  Q
    ||||||||| |||||    
T  6888842 attttgacaactcta 6888856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 498
Target Start/End: Complemental strand, 19975868 - 19975754
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattcga-ctggccc 483  Q
    ||||||||||||||| ||||| |   ||||||||||||||| ||||  ||||| ||||| |||||||||||||||  ||||||||||| ||| | | |||    
T  19975868 gggccgggctaaaaagccctggaaaaattcgggctgcaattattagacccaagccctacattttattcgggcttttcggccggcccatacgacccgaccc 19975769  T
Q  484 attttgacagctcta 498  Q
     ||||||||||||||    
T  19975768 gttttgacagctcta 19975754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 21075933 - 21076020
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  21075933 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 21076020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 43746329 - 43746416
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  43746329 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 43746416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 22036897 - 22036846
Alignment:
Q  28 gatgttgagttgaaataataaagcatataacagaagaaaaataaaacttgta 79  Q
    |||| |||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  22036897 gatgctgagttaaaataataaagcataaaactgaagaaaaataaaacttgta 22036846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 22107085 - 22107034
Alignment:
Q  28 gatgttgagttgaaataataaagcatataacagaagaaaaataaaacttgta 79  Q
    |||| |||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  22107085 gatgctgagttaaaataataaagcataaaactgaagaaaaataaaacttgta 22107034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 22117465 - 22117414
Alignment:
Q  28 gatgttgagttgaaataataaagcatataacagaagaaaaataaaacttgta 79  Q
    |||| |||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  22117465 gatgctgagttaaaataataaagcataaaactgaagaaaaataaaacttgta 22117414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 30987365 - 30987428
Alignment:
Q  16 ctcataacaggtgatgttgagttgaaataataaagcatataacagaagaaaaataaaacttgta 79  Q
    |||||||  ||||||| |||||| ||||||||||||||| ||||||||| ||||||| ||||||    
T  30987365 ctcataattggtgatgctgagttcaaataataaagcataaaacagaagacaaataaagcttgta 30987428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 473
Target Start/End: Complemental strand, 27969534 - 27969472
Alignment:
Q  411 attcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccatt 473  Q
    ||||||||| ||||| ||||| ||||| |||||||||||| |||||||||||| ||| |||||    
T  27969534 attcgggctccaattattaggcccaagccctacgttttatgcgggctttcgggtcggtccatt 27969472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 472
Target Start/End: Complemental strand, 20510639 - 20510582
Alignment:
Q  415 gggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat 472  Q
    ||||||||||||||||| ||||  ||| ||||||||| ||||||||| ||||||||||    
T  20510639 gggctgcaatttttaggcccaaaccctgcgttttatttgggctttcgagccggcccat 20510582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 498
Target Start/End: Complemental strand, 43736042 - 43735958
Alignment:
Q  415 gggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    ||||| |||||||| || ||| | ||| |||||||||||||||||||||| ||||||| | | | | ||||||||||||||||||    
T  43736042 gggctccaatttttcggcccaggccctgcgttttattcgggctttcgggctggcccatacggcccgacccattttgacagctcta 43735958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 498
Target Start/End: Complemental strand, 46311916 - 46311832
Alignment:
Q  415 gggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    ||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | | ||||||||||||||||||    
T  46311916 gggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccgacccattttgacagctcta 46311832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 30987960 - 30988018
Alignment:
Q  258 ttcaacctcaacacaacaggattt-gaagctctaacgtccactatggcaacttctgtag 315  Q
    |||||||||||||||||| ||||| ||||||||||  |||||| |||||||||| ||||    
T  30987960 ttcaacctcaacacaacaagattttgaagctctaaaatccactctggcaacttcagtag 30988018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 50737961 - 50738046
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    |||||||||||||||||||||||   |||||| |||| |||| | || ||| | ||||| |||||||||| | ||||||| |||||    
T  50737961 gggccgggctaaaaaaccctgaaaaaattcggactgctatttatcggcccaggccctacattttattcggacattcgggctggccc 50738046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 470
Target Start/End: Complemental strand, 50774893 - 50774808
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    |||||||||||||||||||||||   |||||| |||| |||| | || ||| | ||||| |||||||||| | ||||||| |||||    
T  50774893 gggccgggctaaaaaaccctgaaaaaattcggactgctatttatcggcccaggccctacattttattcggacattcgggctggccc 50774808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 46219159 - 46219071
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggc-tttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||| |||||||||||||| | | | | ||||||||| ||||||||||    
T  46219159 ttcgggctccaattattcggcccaagccctacattttattcgggcttttcgggccggcccttacggcccggcccatttcgacagctcta 46219071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 385 - 498
Target Start/End: Complemental strand, 7505325 - 7505211
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggccc 483  Q
    ||||||||||||||| ||||| |   ||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||||||||||||| | | | |||||    
T  7505325 gggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacattttattcaggctttcgggccggcccatacgggccggccc 7505226  T
Q  484 attttgacagctcta 498  Q
     ||||||||||||||    
T  7505225 gttttgacagctcta 7505211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 385 - 472
Target Start/End: Complemental strand, 35709981 - 35709894
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat 472  Q
    ||||||||||||||| ||||||    ||  ||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||||    
T  35709981 gggccgggctaaaaagccctgataaaatatgggctgcaatttttaggcccaagccctgcgttttattcgggctttcgggctggcccat 35709894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 385 - 473
Target Start/End: Original strand, 47381498 - 47381586
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccatt 473  Q
    ||||||||||||||| ||||| |   ||||||||| ||||| ||||| ||||| |||||||||||| |||  |||||||||||||||||    
T  47381498 gggccgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctacgttttatgcggattttcgggccggcccatt 47381586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 1873697 - 1873610
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  1873697 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 1873610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 23025223 - 23025136
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  23025223 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 23025136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 472
Target Start/End: Original strand, 31272137 - 31272224
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat 472  Q
    ||||||||||||||| ||||| |   ||||| ||||||||| ||||| ||||| ||||| ||||||||||||||| ||| ||||||||    
T  31272137 gggccgggctaaaaagccctggaaaaattcgtgctgcaattattaggcccaagccctacattttattcgggcttttgggtcggcccat 31272224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 39494092 - 39494179
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  39494092 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 39494179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 469
Target Start/End: Complemental strand, 33604639 - 33604559
Alignment:
Q  389 cgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcc 469  Q
    ||||||||||| ||||| |   ||||||||| ||||| ||||| ||||| ||||||||||| |||| ||||||||||||||    
T  33604639 cgggctaaaaagccctggaaaaattcgggctacaattattaggcccaagccctacgttttactcggactttcgggccggcc 33604559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 498
Target Start/End: Complemental strand, 41200308 - 41200197
Alignment:
Q  388 ccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat-tcgactggcccatt 486  Q
    ||||||||||||||||||||   ||||||||||| |||| | ||  || | ||||| ||||||| |||||||||||||||||| |   | | ||||||||    
T  41200308 ccgggctaaaaaaccctgaaaaaattcgggctgctatttatcggctcaggccctacattttatttgggctttcgggccggcccgtaaggcccggcccatt 41200209  T
Q  487 ttgacagctcta 498  Q
    ||||||||||||    
T  41200208 ttgacagctcta 41200197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 17511322 - 17511404
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccgg 467  Q
    |||||||||||||||||||||||   ||||||||| | |||| | || ||| | ||||| |||||||| ||||||||||||||    
T  17511322 gggccgggctaaaaaaccctgaaaaaattcgggctactatttatcggcccaggacctacattttattcaggctttcgggccgg 17511404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 17541892 - 17541810
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccgg 467  Q
    |||||||||||||||||||||||   ||||||||| | |||| | || ||| | ||||| |||||||| ||||||||||||||    
T  17541892 gggccgggctaaaaaaccctgaaaaaattcgggctactatttatcggcccaggacctacattttattcaggctttcgggccgg 17541810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 473
Target Start/End: Complemental strand, 10993247 - 10993186
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccatt 473  Q
    |||| ||| ||||| || || ||||| ||||| |||||||||||||||||||||||||||||    
T  10993247 ttcgagctccaattattcggcccaagccctacattttattcgggctttcgggccggcccatt 10993186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 871435 - 871475
Alignment:
Q  142 aaatagaaaacagtaaatatcaataccatgaataaatttaa 182  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  871435 aaatagaaaacagtaaatattaataccatgaataattttaa 871475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 1232712 - 1232752
Alignment:
Q  142 aaatagaaaacagtaaatatcaataccatgaataaatttaa 182  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  1232712 aaatagaaaacagtaaatattaataccatgaataattttaa 1232752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 16526249 - 16526162
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || ||  |||| ||||| |||||||||| ||||||||||||||| | | | | ||||||||||||||||||||    
T  16526249 ttcgggctccaattattcggctcaagccctacattttattcggactttcgggccggcccttacggcccggcccattttgacagctcta 16526162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 460
Target Start/End: Original strand, 2621484 - 2621533
Alignment:
Q  411 attcgggctgcaatttttaggtccaagtcctacgttttattcgggctttc 460  Q
    ||||||||||||||| |||||  |||  ||||||||||||||||||||||    
T  2621484 attcgggctgcaattattaggctcaaaccctacgttttattcgggctttc 2621533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 389 - 498
Target Start/End: Complemental strand, 32594128 - 32594018
Alignment:
Q  389 cgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattt 487  Q
    |||| |||||| |||||||   ||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||||| | | | | |||||||||    
T  32594128 cgggttaaaaagccctgaaaaaattcgggctgcaattattcggtccaggtcctacattttattcgggctttcgggccggcccgtacggcccggcccattt 32594029  T
Q  488 tgacagctcta 498  Q
    |||||||||||    
T  32594028 tgacagctcta 32594018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 388 - 473
Target Start/End: Original strand, 3415234 - 3415319
Alignment:
Q  388 ccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccatt 473  Q
    |||||||||||| ||||| |   ||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  3415234 ccgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctacgttttattcgggctttcgggccggcccatt 3415319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 470
Target Start/End: Complemental strand, 32767670 - 32767585
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    ||||||||||||||| ||||| |   ||||||||||||||| ||||| ||||| ||||  ||||||||||||||||||||||||||    
T  32767670 gggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctatattttattcgggctttcgggccggccc 32767585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 498
Target Start/End: Complemental strand, 41361317 - 41361232
Alignment:
Q  414 cgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat-tcgactggcccattttgacagctcta 498  Q
    |||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||| | | || |||| ||||||||||||||    
T  41361317 cgggctgcaatttttaggcccaagccatgcgttttattcgggctttcgggccggcccatataggctagcccgttttgacagctcta 41361232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 43286280 - 43286365
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    ||||||||||||||| ||||| |   ||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||||    
T  43286280 gggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctctcgggccagccc 43286365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 47295626 - 47295539
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  47295626 ttcgggctccaattattcggtccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 47295539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 411 - 470
Target Start/End: Original strand, 52464140 - 52464199
Alignment:
Q  411 attcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    |||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  52464140 attcgggctgtaattattaggcccaagccctacgttttattcgggctttcgggccggccc 52464199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 498
Target Start/End: Complemental strand, 19240854 - 19240744
Alignment:
Q  389 cgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattcga-ctggcccattt 487  Q
    ||||||||||  |||||||   ||||||||||||||| ||||| ||||  ||||| ||||||||||||||||||||||| ||||  || | ||||| |||    
T  19240854 cgggctaaaatgccctgaaaaaattcgggctgcaattattaggcccaaaccctacattttattcgggctttcgggccggtccatatgacccggcccgttt 19240755  T
Q  488 tgacagctcta 498  Q
    |||||||||||    
T  19240754 tgacagctcta 19240744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 412 - 500
Target Start/End: Complemental strand, 39345893 - 39345804
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctctaaa 500  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||||    
T  39345893 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctctaaa 39345804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 499
Target Start/End: Original strand, 20034343 - 20034431
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctctaa 499  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | |||||||||||||||||||||    
T  20034343 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctctaa 20034431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 503
Target Start/End: Complemental strand, 27870084 - 27869992
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctctaaacaa 503  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | |||||||||||||||||||| ||||    
T  27870084 ttcgggctccaattatttggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctctacacaa 27869992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 17543809 - 17543722
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  17543809 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 17543722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 499
Target Start/End: Original strand, 51401360 - 51401475
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattcg-actggccc 483  Q
    ||||||||||||||| | ||| |   |||||||||| |||||||  | ||||  |||| |||||| |||||||  |||||||||||||||| ||| ||||    
T  51401360 gggccgggctaaaaagctctggaaaaattcgggctggaatttttgagcccaaaccctaagttttactcgggctaacgggccggcccattcgaactagccc 51401459  T
Q  484 attttgacagctctaa 499  Q
    ||||||||||||||||    
T  51401460 attttgacagctctaa 51401475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 498
Target Start/End: Original strand, 9455362 - 9455469
Alignment:
Q  392 gctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat-tcgactggcccattttga 490  Q
    |||||||| |||||||   ||||||||||||||| ||  |||||   ||||| |||||||||||||||||| ||||||| | | | | ||||||||||||    
T  9455362 gctaaaaagccctgaaaaaattcgggctgcaattattcagtccagtccctacattttattcgggctttcggaccggcccgtattgtccggcccattttga 9455461  T
Q  491 cagctcta 498  Q
    ||||||||    
T  9455462 cagctcta 9455469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 45522562 - 45522475
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | | ||||||||||||||||||    
T  45522562 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccgacccattttgacagctcta 45522475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 498
Target Start/End: Complemental strand, 34030385 - 34030272
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggccc 483  Q
    ||||||||| ||||| |||||  |  |||| |||||| ||||||||| ||||| |||||||||| |||||||||||||| |||||| | | ||| ||||     
T  34030385 gggccgggccaaaaagccctgtttaaattcaggctgccatttttaggcccaagccctacgtttt-ttcgggctttcgggtcggcccgtacggaccggcct 34030287  T
Q  484 attttgacagctcta 498  Q
     ||||||||||||||    
T  34030286 gttttgacagctcta 34030272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 498
Target Start/End: Complemental strand, 44341282 - 44341168
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat-tcgactggccc 483  Q
    ||||||||||||||| ||||| |   || ||| |||||||| || || ||||| ||||| |||||||||||||||||| ||||||| | | | | |||||    
T  44341282 gggccgggctaaaaagccctggaagaatccggactgcaattattcggcccaagccctacattttattcgggctttcggaccggcccgtatggcccggccc 44341183  T
Q  484 attttgacagctcta 498  Q
     ||||||||||||||    
T  44341182 gttttgacagctcta 44341168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 499
Target Start/End: Original strand, 54134540 - 54134625
Alignment:
Q  415 gggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctctaa 499  Q
    ||||| ||||| || || ||||| ||||| |||||||||||||||||||||| ||| | | | | |||||||||||||||||||||    
T  54134540 gggctccaattattcggcccaagccctacattttattcgggctttcgggccgacccttacggcccggcccattttgacagctctaa 54134625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 499
Target Start/End: Complemental strand, 951435 - 951347
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctctaa 499  Q
    |||||||| || || || || ||||| | ||| |||||||||||||||||||||||||| | | | | |||||||||||||||||||||    
T  951435 ttcgggctccacttattcggcccaagccttacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctctaa 951347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 1705225 - 1705309
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    ||||||||||||||| |||||||   ||||||||||| ||| || || |||   ||| | ||||||||||||||||||||||||||    
T  1705225 gggccgggctaaaaagccctgaaaa-attcgggctgctattatttggcccagaccctgcattttattcgggctttcgggccggccc 1705309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 411 - 470
Target Start/End: Original strand, 38976290 - 38976349
Alignment:
Q  411 attcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggccc 470  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  38976290 attcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggccc 38976349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 499
Target Start/End: Complemental strand, 75038 - 74952
Alignment:
Q  414 cgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat-tcgactggcccattttgacagctctaa 499  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||| ||| ||||| | | || |||| |||||||||||||||    
T  75038 cgggctgcaatttttaggcccaagccctacgttttattcgggctttcggaccgacccatatgggctagcccgttttgacagctctaa 74952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 413 - 498
Target Start/End: Original strand, 37206082 - 37206168
Alignment:
Q  413 tcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| || | | | ||||| ||||||||||||||    
T  37206082 tcgggttgcaatttttaggcccaagccctacgttttattcgggctttcgggccggcctatacgggccggcccgttttgacagctcta 37206168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 38356068 - 38356155
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattcga-ctggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | ||| | ||||||||||||||||||||    
T  38356068 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacgacccggcccattttgacagctcta 38356155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 473
Target Start/End: Original strand, 1398402 - 1398465
Alignment:
Q  411 attcgggctgcaatttttaggtccaagtcctacg-ttttattcgggctttcgggccggcccatt 473  Q
    ||||||||||| ||||||||| ||||| |||||| |||| ||||||||||||||||||||||||    
T  1398402 attcgggctgccatttttaggcccaagccctacgttttttttcgggctttcgggccggcccatt 1398465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 6238243 - 6238156
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  6238243 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 6238156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 6899953 - 6899866
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  6899953 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 6899866  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 6955834 - 6955921
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  6955834 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 6955921  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 10642088 - 10642175
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  10642088 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 10642175  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 35038795 - 35038882
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  35038795 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 35038882  T

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Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 35838168 - 35838081
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  35838168 ttcgggctccaattattcggcccaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 35838081  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 21731775 - 21731688
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||| ||||||| | | | | ||||||||||||||||||||    
T  21731775 ttcgggctccaattattcggcccaagccctacattttattcgggctttcggcccggcccttacggcccggcccattttgacagctcta 21731688  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 24477344 - 24477257
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || ||  |||| ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  24477344 ttcgggctccaattattcggctcaagccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 24477257  T

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Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 42860358 - 42860445
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||| ||||| || || ||||  ||||| |||||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  42860358 ttcgggctccaattattcggcccaaaccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 42860445  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 473
Target Start/End: Complemental strand, 9996301 - 9996240
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccatt 473  Q
    |||||||| ||||| || || ||||| ||||| |||||||||||||||||| ||||||||||    
T  9996301 ttcgggctccaattattcggcccaagccctacattttattcgggctttcggcccggcccatt 9996240  T

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Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 495
Target Start/End: Original strand, 4699973 - 4700057
Alignment:
Q  412 ttcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagct 495  Q
    |||||||| ||||| || || ||||  ||||| |||||||||||||||||||||||||| | | | | |||||||||||||||||    
T  4699973 ttcgggctccaattattcggcccaaaccctacattttattcgggctttcgggccggcccttacggcccggcccattttgacagct 4700057  T

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Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 473
Target Start/End: Original strand, 33908144 - 33908232
Alignment:
Q  385 gggccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccatt 473  Q
    ||||||||||||||| ||||  |   ||||||||| |||||||| || ||| | |||  ||||||||||||||||||| ||||||||||    
T  33908144 gggccgggctaaaaagccctagaaaaattcgggctccaatttttcggcccaggccctgtgttttattcgggctttcggaccggcccatt 33908232  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 466
Target Start/End: Complemental strand, 42092628 - 42092568
Alignment:
Q  406 aatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccg 466  Q
    ||||||| |||||||||||||||||| ||||   |||||||||||||||| ||||| ||||    
T  42092628 aatttatccgggctgcaatttttaggcccaaactctacgttttattcgggttttcgagccg 42092568  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 498
Target Start/End: Original strand, 20338527 - 20338638
Alignment:
Q  388 ccgggctaaaaaaccctgaatttattcgggctgcaatttttaggtccaagtcctacgttttattcgggctttcgggccggcccat-tcgactggcccatt 486  Q
    |||||||||||| |||||||   ||||||||||| |||| | || | | | ||||| |||||||||| ||||||||||||||| |   | | ||||||||    
T  20338527 ccgggctaaaaatccctgaaaaaattcgggctgctatttatcggcctaggccctacattttattcggactttcgggccggcccgtaaagcccggcccatt 20338626  T
Q  487 ttgacagctcta 498  Q
    ||||||||||||    
T  20338627 ttgacagctcta 20338638  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 498
Target Start/End: Complemental strand, 1845468 - 1845416
Alignment:
Q  447 ttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    |||||||||||||||||||||||| | | | | ||||||||||||||||||||    
T  1845468 ttattcgggctttcgggccggcccttacggcccggcccattttgacagctcta 1845416  T

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Target: scaffold1449 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1449
Description:

Target: scaffold1449; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 498
Target Start/End: Original strand, 1617 - 1677
Alignment:
Q  439 cctacgttttattcgggctttcgggccggcccattc-gactggcccattttgacagctcta 498  Q
    ||||| |||||||||||||||||||||||||||| | | | ||||| ||||||||||||||    
T  1617 cctacattttattcgggctttcgggccggcccatacgggccggcccgttttgacagctcta 1677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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