View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_high_9 (Length: 413)
Name: NF13214_high_9
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 396
Target Start/End: Complemental strand, 37339388 - 37339001
Alignment:
| Q |
9 |
gagaagaatggttgagtaataaaagcatgatgagtgtcctcctcatctctttgactaattgatgtcagaaagttgccaaggataatatactatgtttgat |
108 |
Q |
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| T |
37339388 |
gagaagaatggttgagtaataaaagcatgatgagtgtcctcctcatctctttgactaattgatgtcaggaagttgccaaggataatatactatgtttgat |
37339289 |
T |
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| Q |
109 |
acttaaaactttaaatcatatccgtaacaaatgaaaatgagtaattgacaaaataaaagaaatgagagagacctgaagttgctgattcatgccaggaatt |
208 |
Q |
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| T |
37339288 |
acttaaaactttaaatcatatccgtaacaaatgaaaatgagtaattgacaaaataaaagaaatgagagagacctgaagttgctgattcatgccaggaatt |
37339189 |
T |
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| Q |
209 |
gtataataatttgaagaacagcaattgtcatccatgctgtccagtttatcactaagcaggttcaggtgaaagaaattgtcatgttcccttgatgtgttac |
308 |
Q |
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| T |
37339188 |
gtataataatttgaagaacagcaattgtcatccatgctgtccagtttatcactaagcaggttcaggtgaaagaaattgtcatgttcccttgatgtgttgc |
37339089 |
T |
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| Q |
309 |
atgcaatgttgttaaatctatcttccgaaatagattcaaaatcatcagaacacccttctatttccaaggtacattgaggtgggttaat |
396 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37339088 |
atgccatgttgttaaatctatcttccgaaatagattcaaaatcatcagaacacctttctatttccaaggtacattgaggtgggttaat |
37339001 |
T |
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