View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_low_10 (Length: 412)
Name: NF13214_low_10
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 33782919 - 33783331
Alignment:
| Q |
1 |
aatgtcatcttgattggatggtattgcaattgaggtgtgtttttgtggttggaaggtttaagaaaactcacattagattttagagatgcccctcatatat |
100 |
Q |
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| T |
33782919 |
aatgtcatcttgattggatggtattgcaattgaggtgtgtttttgtggttggaaggtttgagaaaactcacattagattgtagagatgcccctcatatat |
33783018 |
T |
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| Q |
101 |
tatagctagatagtttgcccagatatgaaatgatgactgttttggtgaagtataatttcaatgatctgtaataccgagagaacctttgttgggttcaagt |
200 |
Q |
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| T |
33783019 |
tatagctagatagtttgcccagatatgaaatgatgactgttttggtgaagtataatttcaatgatttgtaataccgagagaacctttgttgggttcaagt |
33783118 |
T |
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| Q |
201 |
gcgagtggtgacttgtaagtttcagattgactgtgaataggtttgatgtaggatttatacgagagtcgactcatattcccgatgacttaaggtttttgtt |
300 |
Q |
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| T |
33783119 |
gcgagtggtgacttgtaagtttcagattgactgtgaataggtttgatataggatttatacgagaggtgactcatattcccgatgccttaaggttttggtt |
33783218 |
T |
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| Q |
301 |
agagaggctctcgtataatcttgcattggcctgttgattccggcactcccccgtctcctcaacaattcttgatg-taatgtaaatgttaggtttgttata |
399 |
Q |
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||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33783219 |
agagatgctctcttatagtcttgcattggcctgttgattccggcactcccccgactcctcaacaattcttgatgttaatgtaaatgttaggtttgttata |
33783318 |
T |
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| Q |
400 |
tagatgtttcact |
412 |
Q |
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| T |
33783319 |
tagatgtttcact |
33783331 |
T |
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