View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_low_11 (Length: 399)
Name: NF13214_low_11
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 27747708 - 27747334
Alignment:
| Q |
15 |
caaaaaataccttttaaattgtggatcggtgggatcaatagcatagtcaggagaagagaaaaaatgtgcaaaacgtggatcatcactatatgtactgttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27747708 |
caaaaaataccttttaaattgtggatcggtgggatcaatagcatagtcaggagaagagaaaaaatgtgcaaaacgtggatcatcactatatgtactgttt |
27747609 |
T |
|
| Q |
115 |
ggaactttaccctcatcaataataacattctcctttcccattttgtccttccnnnnnnnaaattttagactatatcctttgagaccagtttctgtcgcct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27747608 |
ggaactttaccctcatcaataataacattctcctttcccattttgtccttcctttttttaaattttagactatatcctttgagaccagtttctgtcgcct |
27747509 |
T |
|
| Q |
215 |
tgtcatcagcaagcaataactcaagctcttctttgcttgctttgtcaacagcaactatatccatatgattgtcagttttactcttttctgtcttcttcct |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27747508 |
tgtcatcagcaagcaataactcaagctcttctttgcttgctttgtcaacagcaactatatccatatgattgtcagttttactcttttctgtcttcttcct |
27747409 |
T |
|
| Q |
315 |
cttcttaacactaggttcctcaatgaactcatttgctgctttaataacttgttgatcactatcatcatctgatga |
389 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27747408 |
cttcttaacactaggttcctcaatgaactcatttgctgcttcaataacttgttgatcactatcatcatctgatga |
27747334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 38527224 - 38527452
Alignment:
| Q |
18 |
aaaataccttttaaattgtggatcggtgggatcaatagcatagtcag--gagaagagaaaaaatgtgcaaaacgtggatcatcactatatgtactgtttg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | | ||||||||||||||||||| ||| | |||||| |
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| T |
38527224 |
aaaataccttttaaattgtggatcggtgggatcaatagcaaagtcagctgagaagataga-----tgcaaaacgtggatcatcaa---atgcattgtttg |
38527315 |
T |
|
| Q |
116 |
gaactttaccctcatcaataataacattctcctttcccattttgtccttccnnnnnnnaaattttagactatatcctttgagaccagtttctgtcgcctt |
215 |
Q |
| |
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| | ||| |||||||||||| |||||||| || ||||| |||| | ||| || ||| ||||||| ||||||||||| ||||| |||| |
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| T |
38527316 |
gtattttcccctcatcaatag---cattctccg---cctttttgcccttgccttttttaaacttcagattatatcccttgagaccagtacctgtcccctt |
38527409 |
T |
|
| Q |
216 |
gtcatcagcaagcaataactcaagctcttctttgcttgctttg |
258 |
Q |
| |
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||||||||||||||| | |||||||||||||||||||||||| |
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| T |
38527410 |
gtcatcagcaagcaacagttcaagctcttctttgcttgctttg |
38527452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 49518334 - 49518111
Alignment:
| Q |
18 |
aaaataccttttaaattgtggatcggtgggatcaatagcatagtcaggagaagagaaaaaatgtgcaa---aacgtggatcatcactatatgtactgttt |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | |||||| ||||| ||||||||||||||||||||||| |
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|
| T |
49518334 |
aaaataccttttatattgtggatcggtgggatcaatagcatagtcaggaga---gaaaagaagtgcaacaaaacgttgatcatcactatatgtactgttt |
49518238 |
T |
|
| Q |
115 |
ggaactttaccctcatcaataataacattctcctttcccattttgtccttccnnnnnnnaaattttagactatatcctttgagaccagtttctgtcgcct |
214 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||| || ||| |
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| T |
49518237 |
ggtactttaccctcatcaataataacattctccttccccattttgtccttcctttttttaaattttagattatatcccttgagaccagtttctatcccct |
49518138 |
T |
|
| Q |
215 |
tgtcatcagcaagcaataactcaagct |
241 |
Q |
| |
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||||||||| |||||||| ||||||| |
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| T |
49518137 |
tgtcatcaggaagcaatagttcaagct |
49518111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 389
Target Start/End: Complemental strand, 49518065 - 49517956
Alignment:
| Q |
283 |
ttgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaat---gaactcatttgctgctttaataacttgttgatcactatcat |
379 |
Q |
| |
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|||||| |||||||| ||| || ||||||||||||||||||| |||||||||||| |||||||| |||| ||| | || |||||||||||||||||| |
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| T |
49518065 |
ttgtcatttttactcatttgtgctttcttcctcttcttaacacaaggttcctcaatgaggaactcatctgcttcttcattagcttgttgatcactatcat |
49517966 |
T |
|
| Q |
380 |
catctgatga |
389 |
Q |
| |
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|||||||||| |
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|
| T |
49517965 |
catctgatga |
49517956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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