View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_low_12 (Length: 375)
Name: NF13214_low_12
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 27747679 - 27747334
Alignment:
| Q |
20 |
tgggatcaatagcatagtcaggagaagagaaaaaatgtgcaaaacgtggatcatcactatatgtactgtttggaactttaccctcatcaataataacatt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27747679 |
tgggatcaatagcatagtcaggagaagagaaaaaatgtgcaaaacgtggatcatcactatatgtactgtttggaactttaccctcatcaataataacatt |
27747580 |
T |
|
| Q |
120 |
ctcctttcccattttgtccttccnnnnnnnaaattttagactatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctct |
219 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27747579 |
ctcctttcccattttgtccttcctttttttaaattttagactatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctct |
27747480 |
T |
|
| Q |
220 |
tctttgcttgctttgtcaacagcaactatatccatatgattgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaatgaact |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27747479 |
tctttgcttgctttgtcaacagcaactatatccatatgattgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaatgaact |
27747380 |
T |
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| Q |
320 |
catttgctgctttaataacttgttgatcactatcatcatctgatga |
365 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27747379 |
catttgctgcttcaataacttgttgatcactatcatcatctgatga |
27747334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 38527379 - 38527452
Alignment:
| Q |
161 |
tatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagctcttctttgcttgctttg |
234 |
Q |
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||||||| ||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
38527379 |
tatatcccttgagaccagtacctgtccccttgtcatcagcaagcaacagttcaagctcttctttgcttgctttg |
38527452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 49518308 - 49518111
Alignment:
| Q |
20 |
tgggatcaatagcatagtcaggagaagagaaaaaatgtgcaa---aacgtggatcatcactatatgtactgtttggaactttaccctcatcaataataac |
116 |
Q |
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||||||||||||||||||||||||| ||||| | |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49518308 |
tgggatcaatagcatagtcaggaga---gaaaagaagtgcaacaaaacgttgatcatcactatatgtactgtttggtactttaccctcatcaataataac |
49518212 |
T |
|
| Q |
117 |
attctcctttcccattttgtccttccnnnnnnnaaattttagactatatcctttgagaccagtttctgtcgccttgtcatcagcaagcaataactcaagc |
216 |
Q |
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||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||| || |||||||||||| |||||||| |||||| |
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| T |
49518211 |
attctccttccccattttgtccttcctttttttaaattttagattatatcccttgagaccagtttctatccccttgtcatcaggaagcaatagttcaagc |
49518112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 365
Target Start/End: Complemental strand, 49518065 - 49517956
Alignment:
| Q |
259 |
ttgtcagttttactcttttctgtcttcttcctcttcttaacactaggttcctcaat---gaactcatttgctgctttaataacttgttgatcactatcat |
355 |
Q |
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|||||| |||||||| ||| || ||||||||||||||||||| |||||||||||| |||||||| |||| ||| | || |||||||||||||||||| |
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| T |
49518065 |
ttgtcatttttactcatttgtgctttcttcctcttcttaacacaaggttcctcaatgaggaactcatctgcttcttcattagcttgttgatcactatcat |
49517966 |
T |
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| Q |
356 |
catctgatga |
365 |
Q |
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|||||||||| |
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| T |
49517965 |
catctgatga |
49517956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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