View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_low_13 (Length: 373)
Name: NF13214_low_13
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 41132848 - 41133199
Alignment:
| Q |
18 |
gtttttaatccctttagtgaaagtacttgcatacacataaagtggagatgtaccaatatcaccatatacaattcctatgctttgaaatgccaaactcaat |
117 |
Q |
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| T |
41132848 |
gtttttaatccctttagcgaaagtacttgcatacacataaagtggagatgtaccaatatcaccatatacaattcctatgctttgaaatgccaaagtcaat |
41132947 |
T |
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| Q |
118 |
gtcacgctccaacccacctgcatatcacatataattaatttgtcaagaggaaaatattaattcttacatacaatactatatatgaaatatatatgcatga |
217 |
Q |
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| T |
41132948 |
gtcacgctccaacccacctgcatgtcacatataattaatttgtcaagaggaaaatattaattcttacatacaatactatatatgaaatatatatgcatga |
41133047 |
T |
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| Q |
218 |
agaccttggaattgtggtttgcattcatagaaactcttccagcttctaaattgagggagtctacacgacgtagttttgcccatgacacctttcgatcttt |
317 |
Q |
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| T |
41133048 |
agaccttggaattgtggtttgcattcatagaaactcttccagcttctaaattgagggagtctacacgacgtagttttgcccatgacacctttcgatcttt |
41133147 |
T |
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| Q |
318 |
cagctttttctccgtaatctcctttgttgtttctgtctcatcctctctgctc |
369 |
Q |
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| T |
41133148 |
cagctttttctccgtaatctcctttgttgtttctgtctcatcctctatgctc |
41133199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 7798396 - 7798337
Alignment:
| Q |
52 |
acataaagtggagatgtaccaatatcaccatatacaattcctatgctttgaaatgccaaa |
111 |
Q |
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| T |
7798396 |
acataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaatgccaaa |
7798337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 7817666 - 7817607
Alignment:
| Q |
52 |
acataaagtggagatgtaccaatatcaccatatacaattcctatgctttgaaatgccaaa |
111 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||||||| |
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| T |
7817666 |
acataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaatgccaaa |
7817607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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