View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13214_low_14 (Length: 373)

Name: NF13214_low_14
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13214_low_14
NF13214_low_14
[»] chr6 (8 HSPs)
chr6 (1-364)||(9580869-9581232)
chr6 (75-319)||(138329-138573)
chr6 (75-319)||(146350-146594)
chr6 (162-359)||(12691903-12692100)
chr6 (1-229)||(14392407-14392635)
chr6 (281-335)||(30748689-30748743)
chr6 (276-364)||(2683906-2683994)
chr6 (308-356)||(14392280-14392328)
[»] chr1 (3 HSPs)
chr1 (1-340)||(10491109-10491448)
chr1 (306-359)||(10608270-10608323)
chr1 (156-248)||(24662485-24662577)
[»] chr2 (6 HSPs)
chr2 (60-356)||(37983559-37983855)
chr2 (162-343)||(3156494-3156675)
chr2 (309-364)||(40990928-40990983)
chr2 (274-334)||(10206801-10206861)
chr2 (171-229)||(37599365-37599423)
chr2 (309-357)||(5539942-5539990)
[»] chr8 (4 HSPs)
chr8 (171-245)||(38921163-38921237)
chr8 (309-343)||(19298041-19298075)
chr8 (138-220)||(25721086-25721168)
chr8 (306-364)||(40219877-40219935)
[»] chr7 (5 HSPs)
chr7 (309-359)||(26159747-26159797)
chr7 (266-343)||(6214789-6214866)
chr7 (171-229)||(13760880-13760938)
chr7 (276-359)||(19480663-19480746)
chr7 (276-364)||(13064279-13064367)
[»] scaffold1185 (1 HSPs)
scaffold1185 (308-364)||(2096-2152)
[»] chr5 (4 HSPs)
chr5 (309-359)||(28569803-28569853)
chr5 (276-365)||(35077484-35077573)
chr5 (308-359)||(9595107-9595158)
chr5 (266-343)||(34424389-34424466)
[»] chr3 (2 HSPs)
chr3 (314-351)||(18377700-18377737)
chr3 (319-356)||(30075775-30075812)
[»] chr4 (4 HSPs)
chr4 (309-343)||(54824752-54824786)
chr4 (319-356)||(14546507-14546544)
chr4 (276-364)||(46219308-46219396)
chr4 (266-343)||(48104390-48104467)


Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 9581232 - 9580869
Alignment:
Q  1 aaacggcatcacatttgtttttaggatgccacattcttggttctctttggcactttgtttggcactggctgggtatttcctcagtttccttaggtgatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9581232 aaacggcatcacatttgtttttaggatgccacattcttggttctctttggtactttgtttggcactggctgggtatttcctcagtttccttaggtgatat 9581133  T
Q  101 ttgacatcatttcattcagtttacaagtataccgggtttgcctcgagttactcgttcttatttgagaatcatttggtttgctacggtttgggctatttga 200  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9581132 ttgacatcatttcattcagtttacaagtatgtcggatttgcctcgagttattcgttcttatttgagaatcatttggtttgctacggtttgggctatctga 9581033  T
Q  201 aaggaaaggaataatcgtgtatttcaaaacattgtgtctgatccttctgtgttaggtgaaaaacataaattgcattctttcttatggttgaaatctaaaa 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9581032 aaggaaaggaataatcgtgtatttcaaaacatggtgtctgatccttctgtgttaggtgaaaaagataaattgcattctttcttatggttgaaatctaaaa 9580933  T
Q  301 aggataattttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatcca 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  9580932 aggataattttagctatagttatcatgattggtggaaacatccccttctttatatggatatcca 9580869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 319
Target Start/End: Complemental strand, 138573 - 138329
Alignment:
Q  75 atttcctcagtttccttaggtgatatttgacatcat-ttcattcagtttacaagtataccgggtttgcctcgagttactcgttcttatttgagaatcatt 173  Q
    ||||| |||||||| |||||||| ||| |||||||| ||||| |||||||||| ||| || || |||||| ||| | ||| ||| | ||| ||| | |||    
T  138573 atttcttcagtttctttaggtgacattcgacatcatcttcat-cagtttacaaatatgccagggttgcctagagattctcattcatttttaagacttatt 138475  T
Q  174 tggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacattgtgtctgatccttctgtgttaggtgaaaaacataaattgc 273  Q
    ||||||| ||| ||||||  |||||| |||||||||||||  |  | ||| ||||| |  | ||||  ||||||||| |||| ||||||   ||||||||    
T  138474 tggtttgttactgtttggattatttggaaggaaaggaatatccaagcattccaaaatacggcgtcttctccttctgttttagctgaaaagtttaaattgc 138375  T
Q  274 attctttcttatggttgaaatctaaaaaggataattttagctatag 319  Q
    |||||||||||||| ||||||| |||| |   ||||||||||||||    
T  138374 attctttcttatggctgaaatcgaaaacgccaaattttagctatag 138329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 319
Target Start/End: Complemental strand, 146594 - 146350
Alignment:
Q  75 atttcctcagtttccttaggtgatatttgacatcat-ttcattcagtttacaagtataccgggtttgcctcgagttactcgttcttatttgagaatcatt 173  Q
    ||||| |||||||| |||||||| ||| |||||||| ||||| |||||||||| ||| || || |||||| ||| | ||| ||| | ||| ||| | |||    
T  146594 atttcttcagtttctttaggtgacattcgacatcatcttcat-cagtttacaaatatgccagggttgcctagagattctcattcatttttaagacttatt 146496  T
Q  174 tggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacattgtgtctgatccttctgtgttaggtgaaaaacataaattgc 273  Q
    ||||||| ||| ||||||  |||||| |||||||||||||  |  | ||| ||||| |  | ||||  ||||||||| |||| ||||||   ||||||||    
T  146495 tggtttgttactgtttggattatttggaaggaaaggaatatccaagcattccaaaatacggcgtcttctccttctgttttagctgaaaagtttaaattgc 146396  T
Q  274 attctttcttatggttgaaatctaaaaaggataattttagctatag 319  Q
    |||||||||||||| ||||||| |||| |   ||||||||||||||    
T  146395 attctttcttatggctgaaatcgaaaacgccaaattttagctatag 146350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 359
Target Start/End: Complemental strand, 12692100 - 12691903
Alignment:
Q  162 ttgagaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacattgtgtctgatccttctgtgttaggtgaaa 261  Q
    |||||||| ||||| |||| | |  ||||||||||||| |  ||||| || || ||||||||| |||| |  || |||||| ||||| |  |||  ||||    
T  12692100 ttgagaataatttgatttgtttctttttgggctatttggagagaaagaaacaaccgtgtattttaaaatacggtttctgattcttctattatagcggaaa 12692001  T
Q  262 aacataaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcccctcctttatatgggt 359  Q
    ||   |||||| |||||||||| ||| ||||||||||| ||   | |||||||||||||||||||||  ||||||||||||| ||||||| |||||||    
T  12692000 aaataaaattgaattctttcttgtggctgaaatctaaacagacaacttttagctatagttatcatgaccggtggaaacatccactcctttgtatgggt 12691903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 14392635 - 14392407
Alignment:
Q  1 aaacggcatcacatttgtttttaggatgccacattcttggttctctttggcactttgtttggcactggctgggtatttcctcagtttccttaggtgatat 100  Q
    ||||| || |||||||||||||||||||| ||||  | ||||||||||||     ||| || |||||  |||||||||| || ||||  | |||||| ||    
T  14392635 aaacgccaacacatttgtttttaggatgcgacatattcggttctctttggtctcatgtgtgacactgattgggtatttcttcggttttatcaggtgacat 14392536  T
Q  101 ttgacatcatttcattcagtttacaagtataccgggtttgcctcgagttactcgttcttatttgagaatcatttggtttgctacggtttgggctatttga 200  Q
    | ||||||||||| |||||||||| | |||  ||||||||||| || | |||| ||| |   ||||||| |||||||||||| | ||||| |   ||||     
T  14392535 tcgacatcatttccttcagtttactaatatggcgggtttgcctagattcactcattccttcctgagaataatttggtttgcttctgtttgagtactttgg 14392436  T
Q  201 aaggaaaggaataatcgtgtatttcaaaa 229  Q
    ||||||||| |||||| ||| || |||||    
T  14392435 aaggaaagggataatcatgtcttccaaaa 14392407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 30748743 - 30748689
Alignment:
Q  281 cttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtgg 335  Q
    ||||||| ||||||| ||| ||| | | |||||||||||||||||||||||||||    
T  30748743 cttatgggtgaaatcaaaacaggttgactttagctatagttatcatgattggtgg 30748689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 364
Target Start/End: Original strand, 2683906 - 2683994
Alignment:
Q  276 tctttcttatggttgaaatctaaaaagg-ataattttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatcca 364  Q
    |||||||||||||||||||| ||| ||| || |||| || || | |||||||||||||||||| ||| |||| || |||||||| |||||    
T  2683906 tctttcttatggttgaaatcaaaacagggattattt-agttacaattatcatgattggtggaatcattcccttctctatatgggcatcca 2683994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 14392328 - 14392280
Alignment:
Q  308 ttttagctatagttatcatgattggtggaaacatcccctcctttatatg 356  Q
    |||||||||||||||||||||  ||||||||||| | ||||||| ||||    
T  14392328 ttttagctatagttatcatgaacggtggaaacattctctcctttgtatg 14392280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 10491109 - 10491448
Alignment:
Q  1 aaacggcatcacatttgtttttaggatgccacattcttggttctctttggcactttgtttggcactggctgggtatttcctcagtttccttaggtgatat 100  Q
    ||||| |||| |||||||||||||||||  | ||| |||| ||||||||| |   ||||||||| |||||||| ||||| ||||| |||||||  || ||    
T  10491109 aaacgacatctcatttgtttttaggatgtgatatttttggctctctttggtatcatgtttggcattggctgggaatttcttcagtctccttagacgacat 10491208  T
Q  101 ttgacatcatttcattcagtttacaagtataccgggtttgcctcgagttactcgttcttatttgagaatcatttggtttgctacggtttgggctatttga 200  Q
    | |||||||| | |  ||||||||||||||  ||||||||||||||||||||| ||| ||||| ||  | || ||||||||||| ||||||||||||||     
T  10491209 tcgacatcatcttaaccagtttacaagtatgtcgggtttgcctcgagttactcattcatatttaaggcttatatggtttgctactgtttgggctatttgg 10491308  T
Q  201 aaggaaaggaataatcgtgtatttcaaaacattgtgtctgatccttctgtgttaggtgaaaaacataaattgcattctttcttatggttgaaatctaaaa 300  Q
    |||||||||||||| |||||||| ||||| |  ||||||| ||||||||| |||| || |||   |||||||  ||||||||||||| |||||||||| |    
T  10491309 aaggaaaggaataaccgtgtattccaaaatacagtgtctgctccttctgttttagctggaaatgttaaattgacttctttcttatggctgaaatctaata 10491408  T
Q  301 aggataattttagctatagttatcatgattggtggaaaca 340  Q
    |||  || ||||||||||  ||||||||||||||||||||    
T  10491409 aggcaaaatttagctatatgtatcatgattggtggaaaca 10491448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 10608270 - 10608323
Alignment:
Q  306 aattttagctatagttatcatgattggtggaaacatcccctcctttatatgggt 359  Q
    |||||||| ||||||||| ||||||||||||||||||| ||| ||| |||||||    
T  10608270 aattttagttatagttattatgattggtggaaacatccgctcttttgtatgggt 10608323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 24662485 - 24662577
Alignment:
Q  156 tcttatttgagaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacattgtgtctgatccttct 248  Q
    |||| ||||| ||| |||||||||||| |  ||||| ||||||  |||||||| ||||| ||||| ||||||||||| |||| |||| |||||    
T  24662485 tcttttttgaaaataatttggtttgcttctatttggactatttagaaggaaagaaataaccgtgtttttcaaaacatggtgtgtgattcttct 24662577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 356
Target Start/End: Complemental strand, 37983855 - 37983559
Alignment:
Q  60 tggcactggctgggtatttcctcagtttccttaggtgatatttgacatcatttcattcagtttacaagtataccgggtttgcctcgagttactcgttctt 159  Q
    ||||||||| ||||||||||    |||| || |||||| ||| ||||||||||| |||||||||| | |||  ||||||||||| || | |||| ||| |    
T  37983855 tggcactggttgggtatttctaaggttttctcaggtgacattcgacatcatttccttcagtttactaatatggcgggtttgcctagattcactcattcct 37983756  T
Q  160 atttgagaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacattgtgtctgatccttctgtgttaggtga 259  Q
       | ||||| |||||||||||| | |||| || | |||| ||| |||||||||| ||| | || ||||| |     ||| || ||||| |  ||  |||    
T  37983755 tcctaagaataatttggtttgcttctgtttaggttctttggaagaaaaggaataaccgtatcttccaaaatacgacttctaattcttctattctaattga 37983656  T
Q  260 aaaacataaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcccctcctttatatg 356  Q
    |||   ||||||| | |||||||| ||||||||||| ||| |||  |  ||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  37983655 aaaggttaaattgaactctttcttgtggttgaaatcaaaataggcgacatttagctatagttatcatgattggtggaaacatcctctcctttgtatg 37983559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 343
Target Start/End: Original strand, 3156494 - 3156675
Alignment:
Q  162 ttgagaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacattgtgtctgatccttctgtgttaggtgaaa 261  Q
    |||| ||| |||||||||||||| ||||| |||||||| ||||||| ||| || | |||||| ||||| |  || || ||| ||||| | |||| |||||    
T  3156494 ttgacaattatttggtttgctactgtttgtgctatttggaaggaaatgaacaaccatgtattccaaaatacggtctcagattcttctattttagctgaaa 3156593  T
Q  262 aacataaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcc 343  Q
    |   ||| ||| | |||||||| ||| ||||||||||| | |     ||||||||||||| |||| ||||||||||||||||    
T  3156594 aggttaagttgaactctttcttgtggctgaaatctaaacatgccgcctttagctatagttttcataattggtggaaacatcc 3156675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 40990928 - 40990983
Alignment:
Q  309 tttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatcca 364  Q
    ||||||||||||||| | ||||||||||||||||| ||||||| ||||||| ||||    
T  40990928 tttagctatagttattacgattggtggaaacatccactcctttgtatgggtgtcca 40990983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 10206861 - 10206801
Alignment:
Q  274 attctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtg 334  Q
    ||||||||||||||||||| |  ||| |||  |||||| ||||||||||||||||||||||    
T  10206861 attctttcttatggttgaagttaaaataggtgaattttggctatagttatcatgattggtg 10206801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 37599365 - 37599423
Alignment:
Q  171 atttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaa 229  Q
    |||||||||||  | ||||||| | ||||||||||||||||| |||||||||| |||||    
T  37599365 atttggtttgcctctgtttgggttctttgaaaggaaaggaatgatcgtgtattccaaaa 37599423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 5539942 - 5539990
Alignment:
Q  309 tttagctatagttatcatgattggtggaaacatcccctcctttatatgg 357  Q
    |||||||||| ||||||||| |||||||||||||| || |||| |||||    
T  5539942 tttagctataattatcatgactggtggaaacatccgcttctttgtatgg 5539990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 38921237 - 38921163
Alignment:
Q  171 atttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacattgtgtctgatcct 245  Q
    ||||||||||| || |||||||  ||||| ||||| |||||||||||||||||| |||||||  |||||||||||    
T  38921237 atttggtttgcaactgtttgggtcatttggaaggagaggaataatcgtgtatttaaaaacatgatgtctgatcct 38921163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 19298041 - 19298075
Alignment:
Q  309 tttagctatagttatcatgattggtggaaacatcc 343  Q
    |||||||| ||||||||||||||||||||||||||    
T  19298041 tttagctacagttatcatgattggtggaaacatcc 19298075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 25721086 - 25721168
Alignment:
Q  138 ttgcctcgagttactcgttcttatttgagaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgt 220  Q
    |||||| |||| |||| ||||  | ||| ||| |||||||||||| | |||||||||||||| |||||||| || ||||||||    
T  25721086 ttgcctagagtcactcattctcttctgaaaataatttggtttgcttctgtttgggctatttggaaggaaagaaacaatcgtgt 25721168  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 40219877 - 40219935
Alignment:
Q  306 aattttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatcca 364  Q
    |||||| ||||||||||||||||||||||| || ||||| | |||| ||||||| ||||    
T  40219877 aattttggctatagttatcatgattggtggcaaaatcccattctttgtatgggtgtcca 40219935  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 26159747 - 26159797
Alignment:
Q  309 tttagctatagttatcatgattggtggaaacatcccctcctttatatgggt 359  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  26159747 tttagttatagttatcatgactggtggaaacatccgctcctttatatgggt 26159797  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 6214866 - 6214789
Alignment:
Q  266 taaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcc 343  Q
    |||| |||||| ||||||||||||||||||| || |||| |  ||||||| ||| | |||||||||||||||||||||    
T  6214866 taaaatgcattatttcttatggttgaaatctcaacaggaaatctttagctttagctttcatgattggtggaaacatcc 6214789  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 13760880 - 13760938
Alignment:
Q  171 atttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaa 229  Q
    |||||||||||||| |||||||  || ||||||||||||||||| ||||| ||||||||    
T  13760880 atttggtttgctactgtttgggtgatatgaaaggaaaggaataaccgtgtctttcaaaa 13760938  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 359
Target Start/End: Complemental strand, 19480746 - 19480663
Alignment:
Q  276 tctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcccctcctttatatgggt 359  Q
    |||||||||||||||||||| ||| |||     ||||| || ||||| ||||| ||||||||||||||||| |||| |||||||    
T  19480746 tctttcttatggttgaaatcaaaacaggggctatttagttacagttaccatgactggtggaaacatccccttctttgtatgggt 19480663  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 364
Target Start/End: Original strand, 13064279 - 13064367
Alignment:
Q  276 tctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatcca 364  Q
    ||||||||||||||||| || ||| |||    ||||||||| |||||  |||| |||||||| ||||| ||||||| ||||||| ||||    
T  13064279 tctttcttatggttgaagtcaaaacagggactttttagctacagttactatgactggtggaaccatcctctcctttgtatgggtgtcca 13064367  T

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Target: scaffold1185 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold1185
Description:

Target: scaffold1185; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 2096 - 2152
Alignment:
Q  308 ttttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatcca 364  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||| |||| |||||||    
T  2096 ttttagctatacttatcatgaatggtggaaacatcctctcctttgtatgagtatcca 2152  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 28569853 - 28569803
Alignment:
Q  309 tttagctatagttatcatgattggtggaaacatcccctcctttatatgggt 359  Q
    |||||||||||||||||||| |||||||||||||  ||||||| |||||||    
T  28569853 tttagctatagttatcatgactggtggaaacatcaactcctttgtatgggt 28569803  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 365
Target Start/End: Original strand, 35077484 - 35077573
Alignment:
Q  276 tctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatccag 365  Q
    |||| ||||||||||||||| ||| |||     |||||||| ||||||||||| |||||||| ||||| ||||||| ||||||| |||||    
T  35077484 tcttacttatggttgaaatcaaaacagggactatttagctacagttatcatgactggtggaatcatcctctcctttgtatgggtgtccag 35077573  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 9595107 - 9595158
Alignment:
Q  308 ttttagctatagttatcatgattggtggaaacatcccctcctttatatgggt 359  Q
    ||||||||||||||||||||||||||||||| || | |  ||||||||||||    
T  9595107 ttttagctatagttatcatgattggtggaaaaattcacctctttatatgggt 9595158  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 34424389 - 34424466
Alignment:
Q  266 taaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcc 343  Q
    ||||||||| |||||||||||  ||||||| ||| |||     |||||||| | ||||||||||||||||||||||||    
T  34424389 taaattgcactctttcttatgactgaaatcgaaacagggggcctttagctacaattatcatgattggtggaaacatcc 34424466  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 18377737 - 18377700
Alignment:
Q  314 ctatagttatcatgattggtggaaacatcccctccttt 351  Q
    |||||||||||||||||||||||||||||| |||||||    
T  18377737 ctatagttatcatgattggtggaaacatcctctccttt 18377700  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 356
Target Start/End: Complemental strand, 30075812 - 30075775
Alignment:
Q  319 gttatcatgattggtggaaacatcccctcctttatatg 356  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  30075812 gttatcatgattggtggaaacatccgctcctttgtatg 30075775  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 54824786 - 54824752
Alignment:
Q  309 tttagctatagttatcatgattggtggaaacatcc 343  Q
    |||||||| ||||||||||||||||||||||||||    
T  54824786 tttagctacagttatcatgattggtggaaacatcc 54824752  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 356
Target Start/End: Complemental strand, 14546544 - 14546507
Alignment:
Q  319 gttatcatgattggtggaaacatcccctcctttatatg 356  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  14546544 gttatcatgattggtggaaacatctactcctttatatg 14546507  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 364
Target Start/End: Original strand, 46219308 - 46219396
Alignment:
Q  276 tctttcttatggttgaaatctaaaaag-gataattttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatcca 364  Q
    |||||||||||||||||||| |||  | ||| | |||||||| ||||| ||||| |||||||| |||||||| |||| |||||| |||||    
T  46219308 tctttcttatggttgaaatcaaaaccgagatta-tttagctacagttaccatgagtggtggaatcatccccttctttgtatgggcatcca 46219396  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 48104467 - 48104390
Alignment:
Q  266 taaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcc 343  Q
    |||| |||| ||||||||||||||||||| | || |||  |  || |||| ||| |||||||||||||||||||||||    
T  48104467 taaaatgcactctttcttatggttgaaatttcaacaggcaaccttcagctttagctatcatgattggtggaaacatcc 48104390  T

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