View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13214_low_15 (Length: 360)

Name: NF13214_low_15
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13214_low_15
NF13214_low_15
[»] chr5 (12 HSPs)
chr5 (17-192)||(8999258-8999433)
chr5 (286-360)||(542762-542836)
chr5 (287-360)||(18307282-18307355)
chr5 (288-360)||(25497540-25497612)
chr5 (289-359)||(11346037-11346107)
chr5 (314-356)||(35564316-35564358)
chr5 (309-359)||(8537215-8537265)
chr5 (287-360)||(20192381-20192454)
chr5 (286-343)||(19037459-19037516)
chr5 (320-360)||(42865776-42865816)
chr5 (291-359)||(8018-8088)
chr5 (309-360)||(3600387-3600438)
[»] chr2 (14 HSPs)
chr2 (286-356)||(41500210-41500280)
chr2 (308-360)||(24512216-24512268)
chr2 (314-360)||(2920488-2920534)
chr2 (286-360)||(43491136-43491210)
chr2 (304-359)||(2648162-2648217)
chr2 (296-353)||(39393074-39393131)
chr2 (320-360)||(29093800-29093840)
chr2 (286-343)||(17424159-17424216)
chr2 (286-356)||(10365768-10365838)
chr2 (321-359)||(40679570-40679608)
chr2 (286-335)||(82259-82308)
chr2 (286-335)||(3943189-3943238)
chr2 (286-335)||(43943716-43943765)
chr2 (286-343)||(43982226-43982283)
[»] chr7 (12 HSPs)
chr7 (287-360)||(30355211-30355284)
chr7 (290-360)||(36394910-36394980)
chr7 (309-360)||(46863316-46863367)
chr7 (320-360)||(21188398-21188438)
chr7 (304-359)||(17838695-17838750)
chr7 (309-360)||(28980144-28980195)
chr7 (315-354)||(41047833-41047872)
chr7 (289-352)||(42682024-42682087)
chr7 (290-353)||(40587692-40587755)
chr7 (286-343)||(9367713-9367770)
chr7 (315-352)||(28115512-28115549)
chr7 (320-360)||(34139932-34139972)
[»] chr4 (21 HSPs)
chr4 (290-356)||(1041966-1042032)
chr4 (286-360)||(44561302-44561376)
chr4 (286-360)||(56138279-56138353)
chr4 (286-360)||(958566-958640)
chr4 (286-360)||(29700274-29700348)
chr4 (290-359)||(28081489-28081558)
chr4 (286-359)||(21017975-21018050)
chr4 (320-360)||(34154400-34154440)
chr4 (286-343)||(6178099-6178156)
chr4 (286-343)||(49094111-49094168)
chr4 (320-360)||(34530767-34530807)
chr4 (320-360)||(39588127-39588167)
chr4 (309-360)||(4786306-4786357)
chr4 (286-335)||(15999796-15999845)
chr4 (286-343)||(41795345-41795402)
chr4 (286-343)||(55793947-55794004)
chr4 (320-360)||(243317-243357)
chr4 (320-360)||(6283439-6283479)
chr4 (320-360)||(51429301-51429341)
chr4 (286-334)||(55407791-55407839)
chr4 (320-360)||(56304911-56304951)
[»] chr3 (25 HSPs)
chr3 (286-360)||(34694406-34694480)
chr3 (286-360)||(41803025-41803099)
chr3 (286-360)||(55385164-55385238)
chr3 (296-360)||(51402370-51402434)
chr3 (304-359)||(52570539-52570594)
chr3 (286-360)||(43476219-43476293)
chr3 (302-356)||(49609426-49609480)
chr3 (286-359)||(4004776-4004849)
chr3 (290-359)||(36134354-36134423)
chr3 (288-360)||(13896848-13896920)
chr3 (317-360)||(45101820-45101863)
chr3 (317-360)||(55207635-55207678)
chr3 (314-360)||(51696546-51696592)
chr3 (314-359)||(2271286-2271331)
chr3 (291-360)||(41577107-41577176)
chr3 (318-360)||(43568925-43568967)
chr3 (320-360)||(19454323-19454363)
chr3 (320-360)||(24703387-24703427)
chr3 (286-359)||(2647672-2647745)
chr3 (286-360)||(49219763-49219837)
chr3 (286-343)||(34049107-34049164)
chr3 (286-335)||(34691652-34691701)
chr3 (331-360)||(41137780-41137809)
chr3 (286-335)||(48246439-48246488)
chr3 (286-343)||(54389822-54389879)
[»] scaffold0199 (1 HSPs)
scaffold0199 (286-359)||(12361-12434)
[»] chr8 (9 HSPs)
chr8 (287-360)||(26451508-26451581)
chr8 (304-359)||(18441414-18441469)
chr8 (304-360)||(41274637-41274693)
chr8 (286-353)||(42602487-42602554)
chr8 (314-360)||(41858095-41858141)
chr8 (320-359)||(3395927-3395966)
chr8 (287-359)||(15033119-15033192)
chr8 (320-357)||(38871834-38871871)
chr8 (320-360)||(22547504-22547544)
[»] chr1 (14 HSPs)
chr1 (308-360)||(29763191-29763243)
chr1 (314-360)||(42572729-42572775)
chr1 (314-360)||(49395658-49395704)
chr1 (288-360)||(13972091-13972163)
chr1 (320-360)||(27487638-27487678)
chr1 (315-360)||(6434804-6434849)
chr1 (322-359)||(49426750-49426787)
chr1 (320-360)||(14174883-14174923)
chr1 (320-360)||(49927473-49927513)
chr1 (320-359)||(44596896-44596935)
chr1 (290-335)||(1656086-1656131)
chr1 (286-343)||(13636111-13636168)
chr1 (286-343)||(19159650-19159707)
chr1 (331-360)||(26637228-26637257)
[»] chr6 (8 HSPs)
chr6 (286-354)||(12783935-12784003)
chr6 (286-343)||(6204854-6204911)
chr6 (286-343)||(11691821-11691878)
chr6 (320-360)||(32034364-32034404)
chr6 (286-343)||(22305135-22305192)
chr6 (287-335)||(11840247-11840295)
chr6 (287-335)||(13388705-13388753)
chr6 (320-360)||(29061331-29061371)
[»] scaffold0192 (1 HSPs)
scaffold0192 (314-360)||(18871-18917)
[»] scaffold0101 (1 HSPs)
scaffold0101 (286-343)||(36523-36580)
[»] scaffold0176 (1 HSPs)
scaffold0176 (320-360)||(857-897)
[»] scaffold0012 (1 HSPs)
scaffold0012 (287-335)||(232829-232877)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 9e-95; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 8999258 - 8999433
Alignment:
Q  17 agattctggccattcatttggatgttgagctttactgggttttgagattgaaagatgatgaatcgccatgaatgaacatgttcatgctcggaatgatgat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8999258 agattctggccattcatttggatgttgagctttactgggttttgagattgaaagatgatgaatcgccatgaatgaacatgttcatgctcggaatgatgat 8999357  T
Q  117 gcgcggcgcaaccattacggtgaattctttcaaaaccaaatttagctcgtttttaaccgtttgggtttaatcctgc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8999358 gcgcggcgcaaccattacggtgaattctttcaaaaccaaatttagctcgtttttaaccgtttgggtttaatcctgc 8999433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 542836 - 542762
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||  |||| | |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  542836 ccggctgcagctaactgccgaggaaactctcggtagttaactgccgaggatcttctgctacaaatctggcagaag 542762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 18307282 - 18307355
Alignment:
Q  287 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||| | ||||| | |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  18307282 cggctgtagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaag 18307355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 288 - 360
Target Start/End: Original strand, 25497540 - 25497612
Alignment:
Q  288 ggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||| ||||| | |||| ||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  25497540 ggctgcagttaactgccgaggaaaatctcggtagttaactgccgagaatcttctgctacaaatcaggcagaag 25497612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 11346037 - 11346107
Alignment:
Q  289 gctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    |||||| ||||| | |||| |||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  11346037 gctgcagttaactgccgaggaaaacctcggtagttaactgtcgaggatcttctgctacaaatctggcagaa 11346107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 35564316 - 35564358
Alignment:
Q  314 ctcggtagttaactgctgaggatcttctgctacaaatctggca 356  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35564316 ctcggtagttaactgctgaggatcttctgctacaaatctggca 35564358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 8537215 - 8537265
Alignment:
Q  309 aaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| |||||    
T  8537215 aaaatctcggtagttaactgccgaggatgttctgctacaaatctgccagaa 8537265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 20192381 - 20192454
Alignment:
Q  287 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||| ||||| | |||| ||||  ||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  20192381 cggctgcagttaactgccgaggaaaacttcgatagttaaatgccgaggatcttctgctacaaatctggcagaag 20192454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 19037516 - 19037459
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| |||||||||||||    
T  19037516 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgc 19037459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 42865816 - 42865776
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  42865816 agttaattgccgaggatcttctgctacaaatctggcagaag 42865776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 8088 - 8018
Alignment:
Q  291 tgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttct--gctacaaatctggcagaa 359  Q
    |||| ||||| | |||| ||||||||||||||||||| | |||||||| ||  ||||||||||||||||||    
T  8088 tgcagttaactgccgaggaaaatctcggtagttaactaccgaggatctcctgcgctacaaatctggcagaa 8018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 3600387 - 3600438
Alignment:
Q  309 aaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||| |||| |||||||| || ||||||||||||||||||||||| ||||||    
T  3600387 aaaacctcgatagttaacagccgaggatcttctgctacaaatctgacagaag 3600438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 41500280 - 41500210
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggca 356  Q
    ||||||||| ||||| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  41500280 ccggctgcagttaactgccgagaaaaacctcggtagttaactgccgaggatcttctgctacaaatctggca 41500210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 24512216 - 24512268
Alignment:
Q  308 aaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  24512216 aaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaag 24512268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 2920534 - 2920488
Alignment:
Q  314 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  2920534 ctcggtagttaactgccgaggatcttctgctacaaatctggcagaag 2920488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 43491136 - 43491210
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||||||||| |||||| |||| || ||||||||||||| ||| |||||||| || ||||||||||||||    
T  43491136 ccggctgcaattaactgtcgaggaaaaccttggtagttaactgccgagaatcttctgttataaatctggcagaag 43491210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 2648162 - 2648217
Alignment:
Q  304 cgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    |||| ||||||||||||||||| ||| || ||||||||||||||||||||||||||    
T  2648162 cgaggaaaatctcggtagttaattgccgatgatcttctgctacaaatctggcagaa 2648217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 39393074 - 39393131
Alignment:
Q  296 ttaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctg 353  Q
    ||||| ||||||||||| |||||||||||||||  ||||||||||| |||||||||||    
T  39393074 ttaactgtcgagaaaaacctcggtagttaactgtcgaggatcttctactacaaatctg 39393131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 29093840 - 29093800
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  29093840 agttaactgccgaggatcttctgctacaaatctggcagaag 29093800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 17424159 - 17424216
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| |||||||||||||    
T  17424159 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgc 17424216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 10365838 - 10365768
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggca 356  Q
    ||||||| | ||||| | |||| |||| || ||||||||| ||| ||||||||| ||||||||||||||||    
T  10365838 ccggctgtagttaactgccgaggaaaaccttggtagttaaatgccgaggatcttttgctacaaatctggca 10365768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 40679608 - 40679570
Alignment:
Q  321 gttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  40679608 gttaactgccgaggatcttctgctacaaatctggaagaa 40679570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 82308 - 82259
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 335  Q
    ||||||||| ||||| |||||| |||| ||| ||||||||||||||||||    
T  82308 ccggctgcagttaactgtcgaggaaaacctccgtagttaactgctgagga 82259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 3943238 - 3943189
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 335  Q
    ||||||||| ||||| | ||||||||| |||||||||||||||| |||||    
T  3943238 ccggctgcagttaactgccgagaaaaacctcggtagttaactgccgagga 3943189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 43943716 - 43943765
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 335  Q
    ||||||||| ||||| |||||| |||| |||||||||||||||| |||||    
T  43943716 ccggctgcagttaactgtcgaggaaaaactcggtagttaactgccgagga 43943765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 43982226 - 43982283
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||| |||||||    
T  43982226 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaacttctgc 43982283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 30355284 - 30355211
Alignment:
Q  287 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||| ||||| | |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  30355284 cggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaag 30355211  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 36394980 - 36394910
Alignment:
Q  290 ctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||||  | |||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  36394980 ctgcaattaagtgccgaggaaaacctcggtagttaactaccgaggatcttctgctacaaatctggcagaag 36394910  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 46863367 - 46863316
Alignment:
Q  309 aaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||| |||||||||||| || |||||||||||||||||||||||||||    
T  46863367 aaaatctctgtagttaactgccgaagatcttctgctacaaatctggcagaag 46863316  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 21188438 - 21188398
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  21188438 agttaactgccgaggatcttctgctacaaatctggcagaag 21188398  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 17838695 - 17838750
Alignment:
Q  304 cgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    |||| |||| |||| ||||||||||| || ||||||||||||||||||||||||||    
T  17838695 cgaggaaaacctcgatagttaactgccgacgatcttctgctacaaatctggcagaa 17838750  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 28980195 - 28980144
Alignment:
Q  309 aaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||| |||||||||||||||| |||||| |||||||||||||||| ||||||    
T  28980195 aaaacctcggtagttaactgccgaggattttctgctacaaatctgacagaag 28980144  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 41047833 - 41047872
Alignment:
Q  315 tcggtagttaactgctgaggatcttctgctacaaatctgg 354  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  41047833 tcggtagttaactgccgaggatcttctgctacaaatctgg 41047872  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 42682024 - 42682087
Alignment:
Q  289 gctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatct 352  Q
    |||||| ||||| | |||| |||| ||||||| |||||||| ||||||||||||||||||||||    
T  42682024 gctgcagttaactgccgaggaaaacctcggtaattaactgccgaggatcttctgctacaaatct 42682087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 353
Target Start/End: Original strand, 40587692 - 40587755
Alignment:
Q  290 ctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctg 353  Q
    ||||| ||||| |||||| |||| ||| |||||||||||| ||||||||| ||||| |||||||    
T  40587692 ctgcagttaactgtcgaggaaaacctcagtagttaactgccgaggatcttatgctataaatctg 40587755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 9367770 - 9367713
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||| |||||||    
T  9367770 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaacttctgc 9367713  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 28115549 - 28115512
Alignment:
Q  315 tcggtagttaactgctgaggatcttctgctacaaatct 352  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  28115549 tcggtagttaactgttgagggtcttctgctacaaatct 28115512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 34139932 - 34139972
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||| ||||||||||  ||||||||||||||||||    
T  34139932 agttaactgccgaggatcttcctctacaaatctggcagaag 34139972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 1041966 - 1042032
Alignment:
Q  290 ctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggca 356  Q
    ||||| ||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  1041966 ctgcagttaactgccgagaaaaatctcggtagttaactgccgaggatcttctactacaaatctggca 1042032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 44561376 - 44561302
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||| |||||   |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  44561376 ccggctgcagttaactaccgaggaaaatctcggtagttaactgccgaggatcgtctgctacaaatctggcagaag 44561302  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 56138279 - 56138353
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||| ||||| | |||| |||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  56138279 ccggctgcagttaactgccgaggaaaacctcagtagttaactgccgaggatcttctgctacaaatctggcagaag 56138353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 958640 - 958566
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||| |||| ||||| | |||| |||| |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  958640 ccggttgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgctacaaatccggcagaag 958566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 29700348 - 29700274
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||| ||||| | |||| |||| |||||||||||| ||| || |||||||||||||||||||||||||||    
T  29700348 ccggctgcagttaactgccgaggaaaacctcggtagttaattgccgatgatcttctgctacaaatctggcagaag 29700274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 28081489 - 28081558
Alignment:
Q  290 ctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    ||||| ||||| | |||| ||||||||| ||||||| ||  |||||||||||||||||||||||||||||    
T  28081489 ctgcagttaactgccgaggaaaatctcgttagttaagtgtcgaggatcttctgctacaaatctggcagaa 28081558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 21018050 - 21017975
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttct--gctacaaatctggcagaa 359  Q
    ||||||||||||||| | |||| |||| ||||| |||||||||| || ||||||||  ||||||||||||||||||    
T  21018050 ccggctgcaattaactgccgaggaaaacctcggcagttaactgccgatgatcttctgagctacaaatctggcagaa 21017975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 34154440 - 34154400
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  34154440 agttaactgcagaggatcttctgctacaaatctggcagaag 34154400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 6178156 - 6178099
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| |||||||||||||    
T  6178156 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgc 6178099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 49094111 - 49094168
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| |||||||||||||    
T  49094111 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgc 49094168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 34530807 - 34530767
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  34530807 agttaactgccgaggatcttctgctacaaatttggcagaag 34530767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 39588127 - 39588167
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  39588127 agttaactgccgaggatcttctgctacaaatatggcagaag 39588167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 4786357 - 4786306
Alignment:
Q  309 aaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||| |||||| ||||||||| || ||||||||||||||||||||| |||||    
T  4786357 aaaacctcggttgttaactgccgatgatcttctgctacaaatctggtagaag 4786306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 15999845 - 15999796
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 335  Q
    ||||||||||||||| | |||| |||| |||||||||||||||| |||||    
T  15999845 ccggctgcaattaactgccgaggaaaacctcggtagttaactgccgagga 15999796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 41795402 - 41795345
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| |||| ||||||||||| |||||||||||||    
T  41795402 ccggctgcagttaactgccgaggaaaacctcgttagttaactgccgaggatcttctgc 41795345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 55793947 - 55794004
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| ||||| |||||||||| |||||||||||||    
T  55793947 ccggctgcagttaactgccgaggaaaacctcgggagttaactgccgaggatcttctgc 55794004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 243357 - 243317
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||  |||||||||||| |||||||||||||||||    
T  243357 agttaactgtcgaggatcttctgttacaaatctggcagaag 243317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 6283479 - 6283439
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||| |||||||||||||| |||||||||| ||||    
T  6283479 agttaactgccgaggatcttctgcttcaaatctggccgaag 6283439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 51429341 - 51429301
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||  |||||||||||||||||||||||| |||||    
T  51429341 agttaactgtcgaggatcttctgctacaaatctggaagaag 51429301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 55407839 - 55407791
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagg 334  Q
    ||||||||| ||||| | |||| ||||||||||||||||||||| ||||    
T  55407839 ccggctgcagttaactgccgaggaaaatctcggtagttaactgccgagg 55407791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 56304911 - 56304951
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||| ||| |||||| |||||||||||||||||||||||    
T  56304911 agttaattgccgaggattttctgctacaaatctggcagaag 56304951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 34694480 - 34694406
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||| | ||| | ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  34694480 ccggctgcagtaaactgccgagaaaaacctcgggagttaactgccgaggatcttctgctacaaatctggcagaag 34694406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 41803025 - 41803099
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  41803025 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttttgctacaaatctggcagaag 41803099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 55385164 - 55385238
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||  ||||||||||||||||||||||||||||||    
T  55385164 ccggctgcagttaactgccgaggaaaacctcggtagttaactgtcgaggatcttctgctacaaatctggcagaag 55385238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 51402434 - 51402370
Alignment:
Q  296 ttaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  51402434 ttaactgtcgaggaaaacctcggtagttaactgccgaggatcttctgctacaaatctgtcagaag 51402370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 359
Target Start/End: Complemental strand, 52570594 - 52570539
Alignment:
Q  304 cgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    ||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||    
T  52570594 cgagaaaaacctcggtagttaactgccgaggatcttctactacaaatctggcagaa 52570539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 43476219 - 43476293
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  43476219 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttttgctacaaatctgacagaag 43476293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 356
Target Start/End: Original strand, 49609426 - 49609480
Alignment:
Q  302 gtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggca 356  Q
    ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||    
T  49609426 gtcgagaaaaacctcggtagttaactgccgaggaacttctgctacaaatctggca 49609480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 4004849 - 4004776
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    ||||||||| ||||| | |||| |||| ||||||| |||||||| ||||||||||||||||||| |||||||||    
T  4004849 ccggctgcagttaactgccgaggaaaacctcggtacttaactgccgaggatcttctgctacaaacctggcagaa 4004776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 36134354 - 36134423
Alignment:
Q  290 ctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    ||||| ||||| | |||| |||| ||||| |||||||||| |||||||||||||||||||||||||||||    
T  36134354 ctgcagttaactgccgaggaaaacctcgggagttaactgccgaggatcttctgctacaaatctggcagaa 36134423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 13896920 - 13896848
Alignment:
Q  288 ggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||| ||||| |||||| |||| |||||||||||||||| || ||| |||| ||||||||||||||||||    
T  13896920 ggctgcagttaactgtcgaggaaaacctcggtagttaactgccgaagattttctactacaaatctggcagaag 13896848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 45101863 - 45101820
Alignment:
Q  317 ggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  45101863 ggtagttaactgccgaggatcttctgctacaaatctggcagaag 45101820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 55207678 - 55207635
Alignment:
Q  317 ggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  55207678 ggtagttaactgccgaggatcttctgctacaaatctggcagaag 55207635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 51696592 - 51696546
Alignment:
Q  314 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||    
T  51696592 ctcggtagttaactgccgaggatcttctgctgcaaatctggcagaag 51696546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 359
Target Start/End: Complemental strand, 2271331 - 2271286
Alignment:
Q  314 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||    
T  2271331 ctcgggagttaactgccgaggatcttctgctacaaatctggcagaa 2271286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 41577107 - 41577176
Alignment:
Q  291 tgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||| ||||| ||||| |||||  |||||||| |||||| |||||||||||||||||||||| |||||||    
T  41577107 tgcagttaactgtcgacaaaaacttcggtagtaaactgccgaggatcttctgctacaaatcttgcagaag 41577176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 43568925 - 43568967
Alignment:
Q  318 gtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  43568925 gtagttaactgctgaggatcttctgttacaaatctgacagaag 43568967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 19454363 - 19454323
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  19454363 agttaactgccgaggatcttctactacaaatctggcagaag 19454323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 24703427 - 24703387
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  24703427 agttaactgccgatgatcttctgctacaaatctggcagaag 24703387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 2647745 - 2647672
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctac-aaatctggcagaa 359  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| |||||||| || |||| |||||||||||||    
T  2647745 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatctgct-ctacaaaatctggcagaa 2647672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 49219837 - 49219763
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||| ||||| | |||| |||| || |||||||||||   |||||||||||||||||||| || ||||||    
T  49219837 ccggctgcagttaactgccgaggaaaaccttggtagttaactatcgaggatcttctgctacaaatttgacagaag 49219763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 34049107 - 34049164
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||| |||||||    
T  34049107 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaacttctgc 34049164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 34691652 - 34691701
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 335  Q
    ||||||||| ||||| |||||| |||| |||||||||||||||| |||||    
T  34691652 ccggctgcagttaactgtcgaggaaaacctcggtagttaactgccgagga 34691701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 360
Target Start/End: Original strand, 41137780 - 41137809
Alignment:
Q  331 gaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||||||||||||||||||||||||    
T  41137780 gaggatcttctgctacaaatctggcagaag 41137809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 48246439 - 48246488
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 335  Q
    ||||||||| ||||| |||||| |||| |||||||||||||||| |||||    
T  48246439 ccggctgcagttaactgtcgaggaaaacctcggtagttaactgccgagga 48246488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 54389822 - 54389879
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| ||||| |||||||    
T  54389822 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggaacttctgc 54389879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 12434 - 12361
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    ||||||||| ||||| | |||  |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  12434 ccggctgcagttaactgccgatgaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaa 12361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 26451508 - 26451581
Alignment:
Q  287 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||| | ||||| | |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  26451508 cggctgtagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaag 26451581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 359
Target Start/End: Complemental strand, 18441469 - 18441414
Alignment:
Q  304 cgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    ||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||    
T  18441469 cgagaaaaacctcggcagttaactgccgaggatcttctgctacaaatctggcagaa 18441414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 304 - 360
Target Start/End: Original strand, 41274637 - 41274693
Alignment:
Q  304 cgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||| ||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||    
T  41274637 cgaggaaaatctcggtagttaactgccgagaatcttctactataaatctggcagaag 41274693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 353
Target Start/End: Original strand, 42602487 - 42602554
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctg 353  Q
    |||| |||| ||||| | |||| |||| |||||||||||||||| |||||||||||| ||||||||||    
T  42602487 ccggatgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgatacaaatctg 42602554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 41858141 - 41858095
Alignment:
Q  314 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||    
T  41858141 ctcgggagttaactgtcgaggatcttctgctacaaatctggcagaag 41858095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 3395927 - 3395966
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  3395927 agttaactgccgaggatcttctgctacaaatatggcagaa 3395966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 15033192 - 15033119
Alignment:
Q  287 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctg--ctacaaatctggcagaa 359  Q
    |||||||||||||| | ||||  ||| |||||||||||||||| ||||||| ||||  |||||||||||||||||    
T  15033192 cggctgcaattaactgccgagggaaacctcggtagttaactgccgaggatc-tctgacctacaaatctggcagaa 15033119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 38871834 - 38871871
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcag 357  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  38871834 agttaactgccaaggatcttctgctacaaatctggcag 38871871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 22547504 - 22547544
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||| | ||||||||||| ||||||||||||||||||    
T  22547504 agttaactaccgaggatcttctactacaaatctggcagaag 22547544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 29763243 - 29763191
Alignment:
Q  308 aaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  29763243 aaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaag 29763191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 42572775 - 42572729
Alignment:
Q  314 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  42572775 ctcggtagttaactgccgaggatcttctgctacaaatctggcagaag 42572729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 49395658 - 49395704
Alignment:
Q  314 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  49395658 ctcggtagttaactgccgaggatcttctgctacaaatctggcagaag 49395704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 360
Target Start/End: Original strand, 13972091 - 13972163
Alignment:
Q  288 ggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    ||||||| ||||| | |||| |||| ||||||| | ||| || ||||||||||||||||||||||||||||||    
T  13972091 ggctgcagttaacagccgaggaaaacctcggtattaaacagccgaggatcttctgctacaaatctggcagaag 13972163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 27487678 - 27487638
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  27487678 agttaactgccgaggatcttctgctacaaatctggcagaag 27487638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 6434804 - 6434849
Alignment:
Q  315 tcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||||||||  ||||||||||||||||||||||| |||||    
T  6434804 tcggtagttaactgccaaggatcttctgctacaaatctggtagaag 6434849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 49426750 - 49426787
Alignment:
Q  322 ttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    |||||||| |||||||||||||||||||||||||||||    
T  49426750 ttaactgccgaggatcttctgctacaaatctggcagaa 49426787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 14174923 - 14174883
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  14174923 agttaactgccgaggatcttctgctaaaaatctggcagaag 14174883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 49927513 - 49927473
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||| | ||||||||||||||||||||||||||||||    
T  49927513 agttaactaccgaggatcttctgctacaaatctggcagaag 49927473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 44596896 - 44596935
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaa 359  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  44596896 agttaactgctgagtatcttctgctacaaatttggcagaa 44596935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 1656131 - 1656086
Alignment:
Q  290 ctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 335  Q
    ||||| ||||| ||||||||||| |||||||||||||||| |||||    
T  1656131 ctgcagttaactgtcgagaaaaacctcggtagttaactgccgagga 1656086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 13636168 - 13636111
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| |||||||| ||||    
T  13636168 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatctcctgc 13636111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 19159650 - 19159707
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | | || |||| |||||||||||||||| |||||||||||||    
T  19159650 ccggctgcagttaactgccaaggaaaacctcggtagttaactgccgaggatcttctgc 19159707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 360
Target Start/End: Complemental strand, 26637257 - 26637228
Alignment:
Q  331 gaggatcttctgctacaaatctggcagaag 360  Q
    ||||||||||||||||||||||||||||||    
T  26637257 gaggatcttctgctacaaatctggcagaag 26637228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 12784003 - 12783935
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgctacaaatctgg 354  Q
    ||||||||| ||| | |||||| |||| ||| |||||||||||| ||||||||||||||||||||||||    
T  12784003 ccggctgcagttagctgtcgaggaaaacctcagtagttaactgccgaggatcttctgctacaaatctgg 12783935  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 6204854 - 6204911
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| |||||||||||||    
T  6204854 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgc 6204911  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 11691821 - 11691878
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| |||||||||||||    
T  11691821 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatcttctgc 11691878  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 32034404 - 32034364
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  32034404 agttaactgccgatgatcttctgctacaaatctggcagaag 32034364  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 22305135 - 22305192
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||| ||||| | |||| |||| |||||||||||||||| |||||||| ||||    
T  22305135 ccggctgcagttaactgccgaggaaaacctcggtagttaactgccgaggatctcctgc 22305192  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 11840295 - 11840247
Alignment:
Q  287 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 335  Q
    |||||||| ||||| |||||| |||| |||||||||||||||| |||||    
T  11840295 cggctgcagttaactgtcgaggaaaacctcggtagttaactgccgagga 11840247  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 13388753 - 13388705
Alignment:
Q  287 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 335  Q
    |||||||| ||||| |||||| |||| |||||||||||||||| |||||    
T  13388753 cggctgcagttaactgtcgaggaaaacctcggtagttaactgccgagga 13388705  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 29061331 - 29061371
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||| | |||||||||||||||||||||||| |||||    
T  29061331 agttaacttccgaggatcttctgctacaaatctggtagaag 29061371  T

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Target: scaffold0192 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 18917 - 18871
Alignment:
Q  314 ctcggtagttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||    
T  18917 ctcggtagttaactgtcgaggatcttctgctacaaatctggcagaag 18871  T

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Target: scaffold0101 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 36580 - 36523
Alignment:
Q  286 ccggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgaggatcttctgc 343  Q
    ||||||||||||||| | |||| |||| |||||||||||||||| |||||||| ||||    
T  36580 ccggctgcaattaactgccgaggaaaacctcggtagttaactgccgaggatctcctgc 36523  T

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Target: scaffold0176 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 857 - 897
Alignment:
Q  320 agttaactgctgaggatcttctgctacaaatctggcagaag 360  Q
    |||||||||| ||||||||||  ||||||||||||||||||    
T  857 agttaactgccgaggatcttcctctacaaatctggcagaag 897  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 232877 - 232829
Alignment:
Q  287 cggctgcaattaaccgtcgagaaaaatctcggtagttaactgctgagga 335  Q
    |||||||||||||| | |||| |||| |||||||||||||||| |||||    
T  232877 cggctgcaattaactgccgaggaaaacctcggtagttaactgccgagga 232829  T

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