View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13214_low_16 (Length: 342)

Name: NF13214_low_16
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13214_low_16
NF13214_low_16
[»] chr8 (17 HSPs)
chr8 (25-301)||(29893766-29894051)
chr8 (36-144)||(9201710-9201818)
chr8 (36-128)||(6143531-6143623)
chr8 (51-142)||(45450896-45450987)
chr8 (52-128)||(15244621-15244697)
chr8 (47-128)||(2350426-2350507)
chr8 (48-128)||(30436069-30436150)
chr8 (48-128)||(3940975-3941055)
chr8 (48-128)||(23221785-23221865)
chr8 (48-128)||(35813037-35813117)
chr8 (48-106)||(42738563-42738621)
chr8 (52-128)||(3654033-3654109)
chr8 (50-128)||(28968965-28969043)
chr8 (36-74)||(42739358-42739396)
chr8 (37-74)||(2349764-2349801)
chr8 (46-74)||(957524-957552)
chr8 (38-74)||(28968265-28968301)
[»] chr3 (19 HSPs)
chr3 (36-150)||(11486197-11486311)
chr3 (48-128)||(33986137-33986217)
chr3 (47-128)||(50737162-50737243)
chr3 (47-128)||(50775612-50775693)
chr3 (52-143)||(2869822-2869912)
chr3 (20-128)||(19976436-19976550)
chr3 (48-128)||(6884301-6884381)
chr3 (48-128)||(43745887-43745967)
chr3 (48-128)||(46219410-46219490)
chr3 (52-123)||(26843539-26843610)
chr3 (47-128)||(46312171-46312252)
chr3 (48-128)||(27877837-27877917)
chr3 (59-128)||(21075611-21075680)
chr3 (57-128)||(43736590-43736661)
chr3 (79-128)||(24311743-24311792)
chr3 (36-109)||(26319196-26319269)
chr3 (46-76)||(1460312-1460342)
chr3 (46-74)||(3995090-3995118)
chr3 (46-74)||(29522825-29522853)
[»] chr4 (25 HSPs)
chr4 (38-128)||(44341790-44341880)
chr4 (45-150)||(44857022-44857127)
chr4 (48-141)||(3409835-3409928)
chr4 (47-141)||(32594786-32594880)
chr4 (48-128)||(43285468-43285548)
chr4 (46-142)||(9454504-9454600)
chr4 (48-128)||(52463290-52463370)
chr4 (48-128)||(951674-951754)
chr4 (48-128)||(17544172-17544252)
chr4 (48-128)||(20034004-20034084)
chr4 (37-128)||(41361976-41362067)
chr4 (48-123)||(47295891-47295966)
chr4 (48-128)||(27870318-27870398)
chr4 (36-128)||(32768395-32768487)
chr4 (48-128)||(2323511-2323591)
chr4 (48-128)||(45522809-45522889)
chr4 (50-128)||(34858316-34858394)
chr4 (35-108)||(19244503-19244576)
chr4 (48-141)||(54134212-54134311)
chr4 (50-137)||(1324083-1324170)
chr4 (38-128)||(34031065-34031155)
chr4 (46-74)||(16623524-16623552)
chr4 (38-74)||(34859058-34859094)
chr4 (38-74)||(43286260-43286296)
chr4 (31-111)||(51400547-51400627)
[»] chr5 (23 HSPs)
chr5 (39-128)||(37205272-37205361)
chr5 (38-137)||(4970235-4970334)
chr5 (51-128)||(75641-75718)
chr5 (51-128)||(31230835-31230912)
chr5 (49-150)||(42093165-42093266)
chr5 (48-128)||(6238606-6238686)
chr5 (48-128)||(6900316-6900396)
chr5 (48-128)||(21732028-21732108)
chr5 (48-128)||(33907553-33907633)
chr5 (48-128)||(36016563-36016643)
chr5 (47-146)||(36867245-36867343)
chr5 (48-141)||(1845703-1845796)
chr5 (48-122)||(6955502-6955576)
chr5 (48-128)||(9996554-9996634)
chr5 (48-128)||(38355739-38355819)
chr5 (48-128)||(42860024-42860104)
chr5 (48-128)||(4695527-4695607)
chr5 (48-115)||(24477702-24477769)
chr5 (59-128)||(35038471-35038540)
chr5 (48-93)||(10641775-10641820)
chr5 (46-74)||(17016542-17016570)
chr5 (46-74)||(19646979-19647007)
chr5 (38-74)||(38976244-38976280)
[»] chr1 (21 HSPs)
chr1 (158-303)||(30533965-30534112)
chr1 (47-128)||(43263174-43263255)
chr1 (48-128)||(4221872-4221952)
chr1 (47-128)||(46158379-46158460)
chr1 (48-128)||(33189332-33189412)
chr1 (48-128)||(45756955-45757034)
chr1 (48-128)||(17332102-17332181)
chr1 (48-128)||(43780885-43780965)
chr1 (48-119)||(12749905-12749976)
chr1 (52-123)||(24682295-24682366)
chr1 (49-116)||(45566571-45566637)
chr1 (48-141)||(32058134-32058227)
chr1 (48-128)||(9660538-9660618)
chr1 (59-123)||(47188271-47188335)
chr1 (48-128)||(48469626-48469706)
chr1 (38-76)||(6501679-6501717)
chr1 (30-128)||(45040116-45040214)
chr1 (36-73)||(48470425-48470462)
chr1 (48-128)||(49228501-49228582)
chr1 (46-74)||(44922253-44922281)
chr1 (46-74)||(50512011-50512039)
[»] chr7 (16 HSPs)
chr7 (36-146)||(7505862-7505972)
chr7 (36-128)||(31271510-31271602)
chr7 (48-141)||(4267639-4267732)
chr7 (47-128)||(35710596-35710677)
chr7 (48-128)||(1873952-1874032)
chr7 (48-128)||(10993612-10993692)
chr7 (48-128)||(23025469-23025549)
chr7 (52-128)||(49113363-49113439)
chr7 (48-119)||(17471338-17471409)
chr7 (48-119)||(17581805-17581876)
chr7 (61-119)||(41202627-41202685)
chr7 (52-128)||(19106623-19106699)
chr7 (38-92)||(8782332-8782386)
chr7 (36-74)||(35709965-35710003)
chr7 (36-74)||(47381476-47381514)
chr7 (46-74)||(13598135-13598163)
[»] chr6 (17 HSPs)
chr6 (36-122)||(27965817-27965903)
chr6 (40-128)||(17868442-17868530)
chr6 (40-128)||(17878225-17878313)
chr6 (47-141)||(3044984-3045078)
chr6 (48-141)||(10998033-10998126)
chr6 (40-128)||(31654898-31654987)
chr6 (48-141)||(12271431-12271524)
chr6 (48-128)||(15071113-15071193)
chr6 (48-139)||(12075876-12075967)
chr6 (58-128)||(31470975-31471045)
chr6 (48-128)||(11369257-11369338)
chr6 (47-128)||(20143601-20143682)
chr6 (47-128)||(22189157-22189238)
chr6 (48-123)||(26519882-26519957)
chr6 (51-113)||(10233098-10233160)
chr6 (36-74)||(20139286-20139324)
chr6 (36-74)||(22193545-22193583)
[»] chr2 (19 HSPs)
chr2 (51-128)||(38837341-38837418)
chr2 (36-128)||(38571388-38571480)
chr2 (47-128)||(26555852-26555933)
chr2 (158-303)||(38571203-38571334)
chr2 (52-141)||(15560304-15560393)
chr2 (48-128)||(21104311-21104391)
chr2 (48-128)||(40000507-40000587)
chr2 (48-128)||(40860752-40860832)
chr2 (48-123)||(29205707-29205782)
chr2 (50-128)||(4469922-4470000)
chr2 (48-128)||(25096590-25096670)
chr2 (48-128)||(9471651-9471731)
chr2 (36-128)||(15613349-15613440)
chr2 (31-143)||(25458799-25458911)
chr2 (47-119)||(42730071-42730143)
chr2 (48-119)||(17921513-17921583)
chr2 (50-123)||(20921943-20922017)
chr2 (51-128)||(5271939-5272016)
chr2 (37-74)||(20922764-20922801)
[»] scaffold0564 (1 HSPs)
scaffold0564 (48-119)||(9835-9906)
[»] scaffold0495 (1 HSPs)
scaffold0495 (51-113)||(9822-9884)
[»] scaffold0661 (1 HSPs)
scaffold0661 (46-74)||(1588-1616)
[»] scaffold0019 (1 HSPs)
scaffold0019 (46-74)||(103133-103161)


Alignment Details
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 301
Target Start/End: Original strand, 29893766 - 29894051
Alignment:
Q  25 ccgtttcgggtcgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatact 124  Q
    |||||||||| ||||||| |||| || ||||||||| |||| |||||| |  ||||||||||| || ||||||||||||||||||||||||||||||||     
T  29893766 ccgtttcgggccgaacggactgcaggatttttagggtcgggttaaaaatcctggtttaaatacaggttgtaataatagagcccgagcccggccctatacg 29893865  T
Q  125 ggctaacgggccagcccgcacgcaccnnnnnnnaa---------------tgatcctaattactaaccgaacttgcgcaagctnnnnnnncataatcaaa 209  Q
    || |  |||| ||||||||||||||        ||               |||||||||||||||||||||||||| |||| |       ||| |||| |    
T  29893866 ggttctcgggtcagcccgcacgcacatttttaaaaaaaaaaatcttttaatgatcctaattactaaccgaacttgcacaagttaaaaaaacatgatcaga 29893965  T
Q  210 ttgcatagctatatgcacataattacagagtttataatcacacagtttatagcatattcacatagctatataatttaatgaaactcaatcac 301  Q
    ||||||||||||||||||||||||||| |||||||||||||||     |||||||||| |||||||||||||| ||||||||||||||||||    
T  29893966 ttgcatagctatatgcacataattacacagtttataatcacac-----atagcatattaacatagctatataa-ttaatgaaactcaatcac 29894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 9201818 - 9201710
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggc 135  Q
    |||||||||| || ||||||||||||||| || |||||  |||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||    
T  9201818 cgaacgggctacgagctttttagggccggactgaaaagtccggtttaaatacgggctgaaataatagagcccgagctcggccctatacgggctaacgggc 9201719  T
Q  136 cagcccgca 144  Q
    |||||||||    
T  9201718 cagcccgca 9201710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 6143623 - 6143531
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||||||||||||||||||| |||||| |||||| || |||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  6143623 cgaacgggctgcgggctttttagggtcgggctgaaaagcccgatttaaatacgggatgaaataatagagcccgagcccggccctatacaggct 6143531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 45450896 - 45450987
Alignment:
Q  51 ctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagcccg 142  Q
    |||||||||||||||||||||||| | |||| |||| |||||| |||||| ||||||||||| |||||||||| ||||  ||||||||||||    
T  45450896 ctttttagggccgggctaaaaagccctgtttgaatatgggctggaataatggagcccgagcctggccctatacgggcttccgggccagcccg 45450987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 15244697 - 15244621
Alignment:
Q  52 tttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||||||||||||||||| ||||||||||| |||||  || ||||||||||||| |||||||||||| ||||    
T  15244697 tttttagggccgggctaaaaagcccggtttaaatatgggctaaaaaaatagagcccgagtccggccctatacgggct 15244621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 2350507 - 2350426
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||||| || ||||||| |||||| || |||||||| |||| | |||||| |||||||||||||||||||||| ||||    
T  2350507 cgggctttttcggaccgggctgaaaagcccgatttaaatatgggcgggaataattgagcccgagcccggccctatacaggct 2350426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 30436069 - 30436150
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataata-gagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || || | |||||||||||||||||||||| ||||    
T  30436069 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaaatgagcccgagcccggccctatacgggct 30436150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 3941055 - 3940975
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| | |||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  3941055 gggcttttaagggccgggctaaaaagcccagtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 3940975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 23221785 - 23221865
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||| ||||||||| ||||    
T  23221785 gggcttttaagggccgggctaaaaagcccggtttcaatatgggctgcaaaaaatgagcccgagccccgccctatacgggct 23221865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 35813037 - 35813117
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| | |||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  35813037 gggcttttaagggccgggctaaaaagcccagtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 35813117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 42738563 - 42738621
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcc 106  Q
    |||||||| |||||||||||||||||| |||||| |||| ||||||||| |||||||||    
T  42738563 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgtaaaaatagagcc 42738621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 3654033 - 3654109
Alignment:
Q  52 tttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||| ||||||||||||| ||||    
T  3654033 ttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgatcccggccctatacaggct 3654109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 28969043 - 28968965
Alignment:
Q  50 gctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||| ||||||||||| ||||||   |||| |||| |||||| || |||||||||||||||||||||| ||| ||||    
T  28969043 gcttttaagggccgggctgaaaagccttgtttgaatatgggctggaaaaatagagcccgagcccggccctgtacgggct 28968965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 42739358 - 42739396
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  42739358 cgaacgggctccgggcttttttgggccgggctaaaaagc 42739396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 2349801 - 2349764
Alignment:
Q  37 gaacgggctgcgggctttttagggccgggctaaaaagc 74  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  2349801 gaacgggctacgggcttttttgggccgggctaaaaagc 2349764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 957552 - 957524
Alignment:
Q  46 gcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||||||||||||||||||||||    
T  957552 gcgggctttttagggccgggctaaaaagc 957524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 28968301 - 28968265
Alignment:
Q  38 aacgggctgcgggctttttagggccgggctaaaaagc 74  Q
    |||||||| |||||||||| |||||||||||||||||    
T  28968301 aacgggctacgggcttttttgggccgggctaaaaagc 28968265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 11486311 - 11486197
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggc 135  Q
    |||||||| |||||| |||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | ||||||||     
T  11486311 cgaacgggttgcgggttttttaggaccgggctaaaaagcccggtttaaatacgggctggaatgatagagcccgagcccggccctatacggtctaacgggt 11486212  T
Q  136 cagcccgcacgcacc 150  Q
    |||||||||||||||    
T  11486211 cagcccgcacgcacc 11486197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 33986217 - 33986137
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || |||||||||||||||||||||||||| ||||    
T  33986217 gggcttttaagggccgggctaaaaagcccggttttaatatgggctgcaaaaatagagcccgagcccggccctatacgggct 33986137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 50737162 - 50737243
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||| |||||||||||||||||| |||||| |||| |||||| || |||||||||||||||||||||| ||| ||||    
T  50737162 cgggcttttaagggccgggctaaaaagcccggtttgaatatgggctggaaaaatagagcccgagcccggccctttacgggct 50737243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 50775693 - 50775612
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||| |||||||||||||||||| |||||| |||| |||||| || |||||||||||||||||||||| ||| ||||    
T  50775693 cgggcttttaagggccgggctaaaaagcccggtttgaatatgggctggaaaaatagagcccgagcccggccctttacgggct 50775612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 2869912 - 2869822
Alignment:
Q  52 tttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagcccgc 143  Q
    ||||||||| ||||||||||| | |  |||||||||||| || ||||| |||||| |||||||||||||||| |||||||||||||||||||    
T  2869912 tttttagggtcgggctaaaaatcccaatttaaatacgggatgaaataaaagagcc-gagcccggccctatacgggctaacgggccagcccgc 2869822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 19976550 - 19976436
Alignment:
Q  20 ccggtccgtttcgggtcg-----aacgggctgcgggctttttagggccggg-ctaaaaagctcggtttaaatacgggctgtaataatagagcccgagccc 113  Q
    ||||||||||||||||||     ||||||  ||||||||||| |||||||| ||||||||| | ||||||||| | |||| |||| ||||||||||||||    
T  19976550 ccggtccgtttcgggtcggcccgaacgggaagcgggctttttcgggccggggctaaaaagcccagtttaaatatgtgctggaatattagagcccgagccc 19976451  T
Q  114 ggccctatactggct 128  Q
    |||||||||| ||||    
T  19976450 ggccctatacgggct 19976436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 6884301 - 6884381
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  6884301 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 6884381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 43745887 - 43745967
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  43745887 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 43745967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 46219490 - 46219410
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  46219490 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 46219410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 26843539 - 26843610
Alignment:
Q  52 tttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatac 123  Q
    ||||||||||||||||||||||| | ||||||||| | |||| || ||||||| ||||||||||||||||||    
T  26843539 tttttagggccgggctaaaaagcccagtttaaatatgtgctggaaaaatagaggccgagcccggccctatac 26843610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 46312252 - 46312171
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||| |||||||| ||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  46312252 cgggcttttaagggccggactaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 46312171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 27877917 - 27877837
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||| ||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  27877917 gggcttttaagggtcgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 27877837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 21075611 - 21075680
Alignment:
Q  59 ggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  21075611 ggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 21075680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 43736661 - 43736590
Alignment:
Q  57 agggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||||||||||||| | |||| |||| |||||| || | |||||||||||||||||||| ||| ||||    
T  43736661 agggccgggctaaaaagcccagtttgaatatgggctggaaaagtagagcccgagcccggccctttacgggct 43736590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 24311792 - 24311743
Alignment:
Q  79 tttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  24311792 tttaaatacgggctgaaataatagagctcgagcccgaccctatacgggct 24311743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 26319269 - 26319196
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccga 109  Q
    |||||||||  || |||||| |||||||||||||||||   |||||||||| |||||| || ||||||||||||    
T  26319269 cgaacgggcaacgagcttttgagggccgggctaaaaagtctggtttaaatatgggctggaaaaatagagcccga 26319196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 76
Target Start/End: Original strand, 1460312 - 1460342
Alignment:
Q  46 gcgggctttttagggccgggctaaaaagctc 76  Q
    |||||||||||||||||||||||||||||||    
T  1460312 gcgggctttttagggccgggctaaaaagctc 1460342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 3995118 - 3995090
Alignment:
Q  46 gcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||||||||||||||||||||||    
T  3995118 gcgggctttttagggccgggctaaaaagc 3995090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 29522825 - 29522853
Alignment:
Q  46 gcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||||||||||||||||||||||    
T  29522825 gcgggctttttagggccgggctaaaaagc 29522853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 44341880 - 44341790
Alignment:
Q  38 aacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  44341880 aacgggctgcgggctttttaggaccgggctgaaaagcccggtttaaatacgggctgaaataatagagcccgagcccggccctatacgggct 44341790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 44857022 - 44857127
Alignment:
Q  45 tgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagcccgca 144  Q
    ||||||| ||||||| ||||||||| |||| |||||||||||||||||| ||||||||| |  |||||||||||||||| ||||||||||||||||||||    
T  44857022 tgcgggcattttaggaccgggctaataagcccggtttaaatacgggctggaataatagatcttgagcccggccctatacgggctaacgggccagcccgca 44857121  T
Q  145 cgcacc 150  Q
    ||||||    
T  44857122 cgcacc 44857127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 3409835 - 3409928
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagccc 141  Q
    |||||||| ||||||||||||||||||  ||||| |||| |||||| || |||||||||||||||||||||||||| |||||||||||||||||    
T  3409835 gggcttttaagggccgggctaaaaagcctggtttgaatatgggctgcaaaaatagagcccgagcccggccctatacgggctaacgggccagccc 3409928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 32594880 - 32594786
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagccc 141  Q
    |||||||||| |||||||||| |||||| ||||||||||| |||||| |||||| |||| ||||||||||||||||| |||||||||||| ||||    
T  32594880 cgggctttttcgggccgggctgaaaagcccggtttaaatatgggctggaataattgagctcgagcccggccctatacgggctaacgggcctgccc 32594786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 43285468 - 43285548
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || |||||||||||||||||||||||||| ||||    
T  43285468 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaatagagcccgagcccggccctatacgggct 43285548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 9454504 - 9454600
Alignment:
Q  46 gcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagcccg 142  Q
    |||||||||  |||||||||||||||| | || |||||||| ||| || |||||| |||||||||||| ||||||||  ||||||||||||||||||    
T  9454504 gcgggctttgcagggccgggctaaaaaacccgatttaaatatgggttggaataattgagcccgagcccagccctatatgggctaacgggccagcccg 9454600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 52463290 - 52463370
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| || ||| |||| |||||| || |||||||||||||||||||||||||| ||||    
T  52463290 gggcttttaagggccgggctaaaaagcccgatttgaatatgggctgcaaaaatagagcccgagcccggccctatacgggct 52463370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 951754 - 951674
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  951754 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 951674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 17544252 - 17544172
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  17544252 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 17544172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 20034004 - 20034084
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  20034004 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 20034084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 41362067 - 41361976
Alignment:
Q  37 gaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||  ||||||||||| |||||||||||| | | |  |||||||| |||||| |||||| |||||||||||||||||||||| ||||    
T  41362067 gaacgggcaacgggctttttaaggccgggctaaacatccctatttaaataagggctggaataattgagcccgagcccggccctatacaggct 41361976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 47295966 - 47295891
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatac 123  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  ||||||||||||||||||||||    
T  47295966 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatac 47295891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 27870398 - 27870318
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||| | || ||  |||||||||||||||||||||| ||||    
T  27870398 gggcttttaagggccgggctaaaaagcccggtttgaatatgggccgcaaaaaatgagcccgagcccggccctatacgggct 27870318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 32768487 - 32768395
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||||  ||| ||||| |||||||||||||||||| || |||||||| ||||   || |||||||||||||| ||||||||||| ||||    
T  32768487 cgaacgggcaacggacttttgagggccgggctaaaaagcccgatttaaatatgggcctgaaaaatagagcccgagcacggccctatacgggct 32768395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 2323511 - 2323591
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||| ||||||||||| | |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  2323511 gggcttttaagggtcgggctaaaaaacccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 2323591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 45522889 - 45522809
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| ||  || || ||  |||||||||||||||||||||| ||||    
T  45522889 gggcttttaagggccgggctaaaaagcccggtttgaatatggattgcaaaaaatgagcccgagcccggccctatacgggct 45522809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 34858316 - 34858394
Alignment:
Q  50 gctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||| ||||||||||| ||||||   |||| |||| |||||| || |||||||||||||||||||||| ||| ||||    
T  34858316 gcttttaagggccgggctgaaaagccttgtttgaatatgggctggaaaaatagagcccgagcccggccctgtacgggct 34858394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 19244576 - 19244503
Alignment:
Q  35 tcgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccg 108  Q
    |||||||||  ||||| ||||| ||| ||||||||||| | |||||||||||||||||| ||||  ||||||||    
T  19244576 tcgaacgggtagcgggtttttttgggtcgggctaaaaaacccggtttaaatacgggctggaatatcagagcccg 19244503  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 54134212 - 54134311
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagc------ccgagcccggccctatactggctaacgggccagccc 141  Q
    |||||||  |||||||||||||||||| |||||| |||| |||||| || ||  ||||      |||||||||||||||||| |||||||||||| ||||    
T  54134212 gggctttcaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccgagcccggccctatacgggctaacgggccggccc 54134311  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 1324083 - 1324170
Alignment:
Q  50 gctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggcca 137  Q
    ||||||||||||||| || |||||| |||||| |||| |  ||  || ||| ||||||||| | |||||||||| |||||||||||||    
T  1324083 gctttttagggccggactgaaaagcccggtttgaatatgaacttgaaaaatggagcccgagtctggccctatacgggctaacgggcca 1324170  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 34031155 - 34031065
Alignment:
Q  38 aacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||| | ||||||| | ||||||| | ||| ||| | ||||   |||| |||||||||||||||||||||||| ||||    
T  34031155 aacgggcttcgggctttatcgggccggaccaaaaagccctgttgaaaaatgggcatgaatattagagcccgagcccggccctatacaggct 34031065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 16623552 - 16623524
Alignment:
Q  46 gcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||||||||||||||||||||||    
T  16623552 gcgggctttttagggccgggctaaaaagc 16623524  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 34859058 - 34859094
Alignment:
Q  38 aacgggctgcgggctttttagggccgggctaaaaagc 74  Q
    |||||||| |||||||||| |||||||||||||||||    
T  34859058 aacgggctacgggcttttttgggccgggctaaaaagc 34859094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 43286260 - 43286296
Alignment:
Q  38 aacgggctgcgggctttttagggccgggctaaaaagc 74  Q
    |||||||| |||||||||| |||||||||||||||||    
T  43286260 aacgggctccgggctttttcgggccgggctaaaaagc 43286296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 51400547 - 51400627
Alignment:
Q  31 cgggtcgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagc 111  Q
    |||| ||| |||| ||| ||||||| ||||  ||||||||||||   |||||||||  ||||| |||||||||||||||||    
T  51400547 cgggccgagcgggttgcaggcttttcagggttgggctaaaaagccttgtttaaatataggctggaataatagagcccgagc 51400627  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 37205272 - 37205361
Alignment:
Q  39 acgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| ||||    
T  37205272 acgggcttcgggctttttagggccgggctaaaaagcccggtttaaatacgggctgaaataatagagcccgagcctggccctatacgggct 37205361  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 4970235 - 4970334
Alignment:
Q  38 aacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggcca 137  Q
    |||||||  ||||||||| ||||||||| |||||||| | ||||||||| | |||| || | ||||||||||||||||||| |||| |||||||||||||    
T  4970235 aacgggcaacgggcttttgagggccgggttaaaaagcccagtttaaatatgagctggaaaattagagcccgagcccggcccaatacgggctaacgggcca 4970334  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 75718 - 75641
Alignment:
Q  51 ctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||||||||| |||||||| |  |||||||| |||||| |||||| |||||||||||||||||||||| ||||    
T  75718 ctttttagggccgggttaaaaagccctatttaaataagggctggaataattgagcccgagcccggccctatacgggct 75641  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 31230912 - 31230835
Alignment:
Q  51 ctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| ||||||||||||| | ||||||||||| |||||| || ||||| |||||||||||||||||||| ||||    
T  31230912 ctttttagagccgggctaaaaaacccggtttaaatatgggctggaaaaatagggcccgagcccggccctatacgggct 31230835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 42093266 - 42093165
Alignment:
Q  49 ggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagcccgcacgca 148  Q
    |||||||||| |||||| | |||||| |||||||||||| | ||| |||||||||||||  |||||||||||||| ||||  | ||||||||| ||||||    
T  42093266 ggctttttagagccgggttgaaaagcgcggtttaaatacagactgaaataatagagcccaggcccggccctatacgggctccccggccagcccacacgca 42093167  T
Q  149 cc 150  Q
    ||    
T  42093166 cc 42093165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 6238686 - 6238606
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  6238686 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 6238606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 6900396 - 6900316
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  6900396 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 6900316  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 21732108 - 21732028
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  21732108 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 21732028  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 33907553 - 33907633
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| || |||||||| |||||| || ||||||||||||||||| |||| ||| ||||    
T  33907553 gggcttttaagggccgggctaaaaagcccgatttaaatatgggctggaaaaatagagcccgagcccgaccctttacgggct 33907633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 36016643 - 36016563
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  36016643 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 36016563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 36867343 - 36867245
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagcccgcacg 146  Q
    |||||||||||||| ||| || |||||| || |||||||||||| || |||||| |||||||||||||||||||  | | |||||||| |||||||||||    
T  36867343 cgggctttttagggtcggactgaaaagcccgatttaaatacgggttggaataattgagcccgagcccggcccta-ccggactaacgggtcagcccgcacg 36867245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 1845796 - 1845703
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctg-taataatagagcccgagcccggccctatactggctaacgggccagccc 141  Q
    |||||||| |||||||||||||||||| |||||| |||| ||||||  |||||| |||||||||||||||||||||| ||||  |||||| ||||    
T  1845796 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaataat-gagcccgagcccggccctatacgggctcccgggccggccc 1845703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 6955502 - 6955576
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctata 122  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||    
T  6955502 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctata 6955576  T

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Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 9996634 - 9996554
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| ||||| |||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  9996634 gggcttttaagggctgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 9996554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 38355739 - 38355819
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||| ||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  38355739 gggcttttaagggtcgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 38355819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 42860024 - 42860104
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  ||||||||| |||||||||||| ||||    
T  42860024 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagtccggccctatacgggct 42860104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 4695527 - 4695607
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctg-taataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| ||| || || |||||||||||||||||||| ||||    
T  4695527 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgctaaaaacag-gcccgagcccggccctatacgggct 4695607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 24477769 - 24477702
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccgg 115  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  ||||||||||||||    
T  24477769 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccgg 24477702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 35038471 - 35038540
Alignment:
Q  59 ggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||||||||| ||||||| |||| |||||| || ||  ||||||||||||| |||||||| ||||    
T  35038471 ggccgggctaaaaagttcggtttgaatatgggctgcaaaaaatgagcccgagcccgaccctatacgggct 35038540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 10641775 - 10641820
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctg 93  Q
    |||||||| |||||||||||||||||| |||||| |||| ||||||    
T  10641775 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctg 10641820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 17016570 - 17016542
Alignment:
Q  46 gcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||||||||||||||||||||||    
T  17016570 gcgggctttttagggccgggctaaaaagc 17016542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 19646979 - 19647007
Alignment:
Q  46 gcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||||||||||||||||||||||    
T  19646979 gcgggctttttagggccgggctaaaaagc 19647007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 38976244 - 38976280
Alignment:
Q  38 aacgggctgcgggctttttagggccgggctaaaaagc 74  Q
    |||||||| |||||||||| |||||||||||||||||    
T  38976244 aacgggctacgggctttttcgggccgggctaaaaagc 38976280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 158 - 303
Target Start/End: Complemental strand, 30534112 - 30533965
Alignment:
Q  158 aatgatcctaattactaaccgaacttgcgcaagctnnnnnnncataatcaaattgcatagctatat--gcacataattacagagtttataatcacacagt 255  Q
    ||||||||||||  ||||  |||||||| ||||||       ||||||||||||||| ||||||||  |||||||||||   |||||| |||||||||||    
T  30534112 aatgatcctaatacctaatagaacttgcacaagctaaataaacataatcaaattgcagagctatatatgcacataattatgtagtttaaaatcacacagt 30534013  T
Q  256 ttatagcatattcacatagctatataatttaatgaaactcaatcaccc 303  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  30534012 ttatagcatgttcacatagctatataatttaatgaaacttaatcaccc 30533965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 43263174 - 43263255
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  43263174 cgggctttttagggccggactaaaaagcccggtttaaatacgggctgaaataatagagctcgagcccggccctatacgggct 43263255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 4221952 - 4221872
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||| || |||||||||||||||||||||||||| ||||    
T  4221952 gggctttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagagcccgagcccggccctatacgggct 4221872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 46158460 - 46158379
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||| |||||||||||||||||| ||||||||||| ||||   || |||||||||||||||||||||||||| ||||    
T  46158460 cgggcttttgagggccgggctaaaaagcccggtttaaatatgggcctgaaaaatagagcccgagcccggccctatacgggct 46158379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 33189412 - 33189332
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| ||||||||||||||||||  |||||||||| |||||| || ||  |||||||||||||||||||||| ||||    
T  33189412 gggcttttaagggccgggctaaaaagccaggtttaaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 33189332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 45756955 - 45757034
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||| |||||||||||||||||||||| ||||    
T  45756955 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaat-gagcccgagcccggccctatacgggct 45757034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 17332181 - 17332102
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| ||| || || |||||||||||||||||||||| ||| ||||    
T  17332181 gggcttttaagggccgggctaaaaagc-cggtttgaatatgggttggaaaaatagagcccgagcccggccctttacgggct 17332102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 43780885 - 43780965
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  ||||||||||||||| |||||| ||||    
T  43780885 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggctctatacgggct 43780965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 12749976 - 12749905
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccct 119  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  ||||||||||||||||||    
T  12749976 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccct 12749905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 24682295 - 24682366
Alignment:
Q  52 tttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatac 123  Q
    |||||||||||||| | |||||| ||| ||||||| |||||| ||| ||||||||||||||||| |||||||    
T  24682295 tttttagggccgggatgaaaagcccggattaaatatgggctggaattatagagcccgagcccgggcctatac 24682366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 45566637 - 45566571
Alignment:
Q  49 ggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggc 116  Q
    ||||||| |||||||||||||||||| |||||| |||| |||||| || |||||||||||||||||||    
T  45566637 ggcttttaagggccgggctaaaaagcccggtttgaatatgggctg-aaaaatagagcccgagcccggc 45566571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 32058227 - 32058134
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagccc 141  Q
    |||||||| |||| ||||||||||||  | |||| |||| || ||| || | |||| ||||||||||||||| ||| |||||||||||||||||    
T  32058227 gggcttttaagggtcgggctaaaaagtccagtttgaatatggactggaaaagtagaacccgagcccggccctttacgggctaacgggccagccc 32058134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 9660538 - 9660618
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| ||||  |||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  9660538 gggcttttaagggttgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 9660618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 47188271 - 47188335
Alignment:
Q  59 ggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatac 123  Q
    |||| ||||||||||| |||||| |||| |||||| || ||  ||||||||||||||||||||||    
T  47188271 ggcccggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatac 47188335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 48469626 - 48469706
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| ||| ||||||||||||||  ||||| |||  |||||| || |||||||||| ||||||||||| ||| ||||    
T  48469626 gggcttttaaggaccgggctaaaaagcctggtttgaatttgggctggaaaaatagagcccaagcccggccctttacgggct 48469706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 6501717 - 6501679
Alignment:
Q  38 aacgggctgcgggctttttagggccgggctaaaaagctc 76  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  6501717 aacgggcttcgggctttttcgggccgggctaaaaagctc 6501679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 45040214 - 45040116
Alignment:
Q  30 tcgggtcgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||| ||| |||| ||||| ||||| |||| ||| ||||||| | |  ||||||||| ||||| ||| |||||||||||| |||||| ||||| ||||    
T  45040214 tcgggccgagcgggttgcggacttttcagggtcggactaaaaaaccctatttaaatacaggctggaatcatagagcccgagtccggccttatacgggct 45040116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 48470425 - 48470462
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaag 73  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  48470425 cgaacgggcttcgggctttttcgggccgggctaaaaag 48470462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 49228501 - 49228582
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaata-cgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||  |||||| ||||  |||||| || | |||||||||||| ||||||| ||| ||||    
T  49228501 gggcttttgagggccgggctaaaaaggccggtttgaatatggggctggaaaagtagagcccgagctcggccctttacgggct 49228582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 44922281 - 44922253
Alignment:
Q  46 gcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||||||||||||||||||||||    
T  44922281 gcgggctttttagggccgggctaaaaagc 44922253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 50512011 - 50512039
Alignment:
Q  46 gcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||||||||||||||||||||||    
T  50512011 gcgggctttttagggccgggctaaaaagc 50512039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 7505972 - 7505862
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggc 135  Q
    ||||||||| ||||| ||||| | ||||||||||||||| | |||||||||||||||| |||| |||||||||||| ||||||||||| ||||  |||||    
T  7505972 cgaacgggcagcgggttttttcgagccgggctaaaaagccctgtttaaatacgggctggaatattagagcccgagctcggccctatacgggctcccgggc 7505873  T
Q  136 cagcccgcacg 146  Q
    |||||||||||    
T  7505872 cagcccgcacg 7505862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 31271510 - 31271602
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||  ||||||||||| ||||||||||||||||  |||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  31271510 cgaacgggtagcgggctttttcgggccgggctaaaaagtccggtttaaatacgggctgaaatattagagcccgagcccggccctatacgggct 31271602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 4267732 - 4267639
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagccc 141  Q
    |||||||| |||| ||||||||||||| |||||| |||| |||||| || |||||||||||||||||||||| ||| |||||||||||||||||    
T  4267732 gggcttttaagggtcgggctaaaaagcccggtttgaatatgggctggaaaaatagagcccgagcccggccctttacgggctaacgggccagccc 4267639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 35710677 - 35710596
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||||||||||||||||||||||| |  |||||||| |||||| |||||| |||||||||||||||||||||| ||||    
T  35710677 cgggctttttagggccgggctaaaaagccctatttaaataagggctggaataattgagcccgagcccggccctatacgggct 35710596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 1874032 - 1873952
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  1874032 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 1873952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 10993692 - 10993612
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  10993692 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 10993612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 23025549 - 23025469
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  23025549 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 23025469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 49113439 - 49113363
Alignment:
Q  52 tttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||| ||||||||||||||||   |||||| |||| |||||| || |||||||||||||||||||||| ||| ||||    
T  49113439 ttttaagggccgggctaaaaaatccggtttgaatatgggctggaaaaatagagcccgagcccggccctttacgggct 49113363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 17471338 - 17471409
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccct 119  Q
    |||||||| |||||||||||||||||  |||||| ||||  || || || ||||||||||||||||||||||    
T  17471338 gggcttttaagggccgggctaaaaagtccggtttgaatataggttggaaaaatagagcccgagcccggccct 17471409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 17581876 - 17581805
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccct 119  Q
    |||||||| |||||||||||||||||  |||||| ||||  || || || ||||||||||||||||||||||    
T  17581876 gggcttttaagggccgggctaaaaagtccggtttgaatataggttggaaaaatagagcccgagcccggccct 17581805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 41202685 - 41202627
Alignment:
Q  61 ccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccct 119  Q
    |||| ||||||||| |||||| |||| |||||| || ||||||||||||||||||||||    
T  41202685 ccggactaaaaagcccggtttgaatatgggctggaaaaatagagcccgagcccggccct 41202627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 19106699 - 19106623
Alignment:
Q  52 tttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||| |||| ||||| || ||| ||| ||||||| |||||| |||||| |||||||||||||| ||||||| ||||    
T  19106699 tttttcgggctgggctgaatagcccggcttaaatatgggctggaataattgagcccgagcccggtcctatacgggct 19106623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 8782386 - 8782332
Alignment:
Q  38 aacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggct 92  Q
    |||||||| |||||||| | ||||||||| ||||||||||||| ||| |||||||    
T  8782386 aacgggcttcgggctttatcgggccgggccaaaaagctcggttgaaaaacgggct 8782332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 35710003 - 35709965
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagc 74  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  35710003 cgaacgggttgcgggctttttcgggccgggctaaaaagc 35709965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 47381476 - 47381514
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  47381476 cgaacgggctccgggcttttttgggccgggctaaaaagc 47381514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 13598163 - 13598135
Alignment:
Q  46 gcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||||||||||||||||||||||    
T  13598163 gcgggctttttagggccgggctaaaaagc 13598135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 27965817 - 27965903
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctata 122  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||| |||||||||||| ||||||||||    
T  27965817 cgaacgggcagcgggcttttttgggccgggctaaaaagcccggtttaaatacgggctggaatattagagcccgagcacggccctata 27965903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 17868442 - 17868530
Alignment:
Q  40 cgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||| |||||||||||||||||||||||||||||| |  ||||||||||||||| |||||||||||| ||| |||| ||||||| ||||    
T  17868442 cgggttgcgggctttttagggccgggctaaaaagccctatttaaatacgggctggaataatagagcctgagtccggtcctatacgggct 17868530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 17878225 - 17878313
Alignment:
Q  40 cgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||| |||||||||||||||||||||||||||||| |  ||||||||||||||| |||||||||||| ||| |||| ||||||| ||||    
T  17878225 cgggttgcgggctttttagggccgggctaaaaagccctatttaaatacgggctggaataatagagcctgagtccggtcctatacgggct 17878313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 3045078 - 3044984
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagccc 141  Q
    ||||||||| ||||||||||| |||||||| |||| |||| |||||| || |||| ||||||| ||||||||| ||| |||||||||||||||||    
T  3045078 cgggcttttaagggccgggctgaaaagctctgtttgaatatgggctggaaaaataaagcccgatcccggccctgtacaggctaacgggccagccc 3044984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 10998126 - 10998033
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagccc 141  Q
    |||||||| |||||||||||||||||  |||||| |||| |||||| || ||  |||||||||||||||||||||| |||||||||||| ||||    
T  10998126 gggcttttaagggccgggctaaaaagtccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctaacgggccggccc 10998033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 31654898 - 31654987
Alignment:
Q  40 cgggctgcgggctttttagggccgggctaaaaagctcggtttaaa-tacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||| |||||||| ||||||||||||| ||||||| ||||||||| || |||||| |||||| |||||||||||||||||||||| ||||    
T  31654898 cgggttgcgggctatttagggccgggccaaaaagcccggtttaaaatatgggctggaataattgagcccgagcccggccctatacgggct 31654987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 12271431 - 12271524
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagccc 141  Q
    |||||||| ||| |||||||||||||  |||||| |||| |||||| || |||||||||||||||||||||| ||| ||||  |||||||||||    
T  12271431 gggcttttaaggaccgggctaaaaagtccggtttgaatatgggctgaaaaaatagagcccgagcccggccctttacgggctcccgggccagccc 12271524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 15071193 - 15071113
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  15071193 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 15071113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 12075876 - 12075967
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagc 139  Q
    |||||||| |||| ||||||||||||| |||||| |||| |||||  || |||||||||||||||  ||||| ||| |||||||||||||||    
T  12075876 gggcttttaagggtcgggctaaaaagcccggtttgaatatgggctagaaaaatagagcccgagcctagccctttacgggctaacgggccagc 12075967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 31470975 - 31471045
Alignment:
Q  58 gggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||||||||||| || ||| |||| |||||| || |||||||||||||||||||||||||| ||||    
T  31470975 gggccgggctaaaaagcccgatttgaatatgggctgcaaaaatagagcccgagcccggccctatacgggct 31471045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 11369257 - 11369338
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataata-gagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || || | |||||||||||||||||||||| ||||    
T  11369257 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaaatgagcccgagcccggccctatacgggct 11369338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 20143682 - 20143601
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||| |||||||||||||||||| | ||||||||| ||||   || || ||||||||||||||||||||||| ||||    
T  20143682 cgggcttttgagggccgggctaaaaagcccagtttaaatatgggcctgaaaaagagagcccgagcccggccctatacgggct 20143601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 22189157 - 22189238
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    ||||||||| |||||||||||||||||| | ||||||||| ||||   || || ||||||||||||||||||||||| ||||    
T  22189157 cgggcttttgagggccgggctaaaaagcccagtttaaatatgggcctgaaaaagagagcccgagcccggccctatacgggct 22189238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 26519957 - 26519882
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatac 123  Q
    |||||||| |||||||||| ||||||| | |||| |||| |||||| || ||||||||||||||||| ||||||||    
T  26519957 gggcttttaagggccgggcgaaaaagcccagtttgaatatgggctgcaaaaatagagcccgagcccgaccctatac 26519882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 10233098 - 10233160
Alignment:
Q  51 ctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagccc 113  Q
    |||||||||  ||| ||||||||| | ||||||||||| |||  |||||||||||||||||||    
T  10233098 ctttttaggatcggactaaaaagccctgtttaaatacgagctcaaataatagagcccgagccc 10233160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 20139324 - 20139286
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  20139324 cgaacgggctccgggctttttcgggccgggctaaaaagc 20139286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 22193545 - 22193583
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  22193545 cgaacgggctccgggctttttcgggccgggctaaaaagc 22193583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 38837341 - 38837418
Alignment:
Q  51 ctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||    
T  38837341 ctttttagggccgggctaaaaagcccggtttaaatacaggctgaaataatagagcccgagcccggccctatacgggct 38837418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 38571480 - 38571388
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||  |||||||||| |||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  38571480 cgaacgggttgcggattttttagggctgggctaaaaagcccgatttaaatacgggctgtaataatagagctcgagcccggccctatacgggct 38571388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 26555852 - 26555933
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||| |||||| |||||||||||||||||||||| ||||    
T  26555852 cgggctttttagggccgggctaaaaagccctgtttaaatatgggctgaaataatggagcccgagcccggccctatacaggct 26555933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 158 - 303
Target Start/End: Complemental strand, 38571334 - 38571203
Alignment:
Q  158 aatgatcctaattactaaccgaacttgcgcaagctnnnnnnn-cataatcaaattgcatagctatatgcacataattacagagtttataatcacacagtt 256  Q
    |||||||||||||||||||||||||||| ||||||        |||||||||||||||||| ||||||||||||||||||               |||||    
T  38571334 aatgatcctaattactaaccgaacttgcacaagctaaaaaaaacataatcaaattgcatagttatatgcacataattaca---------------cagtt 38571250  T
Q  257 tatagcatattcacatagctatataatttaatgaaactcaatcaccc 303  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  38571249 tatagcatattcacatagcaatataatttaatgaaactcaatcaccc 38571203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 15560304 - 15560393
Alignment:
Q  52 tttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaacgggccagccc 141  Q
    |||| ||||||||| |||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| |||||||||||| ||||    
T  15560304 ttttaagggccgggttaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctaacgggccggccc 15560393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 21104391 - 21104311
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  21104391 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 21104311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 40000507 - 40000587
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  40000507 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 40000587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 40860752 - 40860832
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  |||||||||||||||||||||| ||||    
T  40860752 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggct 40860832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 29205707 - 29205782
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatac 123  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  ||||||||||||||||||||||    
T  29205707 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatac 29205782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 4469922 - 4470000
Alignment:
Q  50 gctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||||| ||||||||||||| || |||| |||| || ||| |||||| |||||||||||||||||||||| ||||    
T  4469922 gctttttaggcccgggctaaaaagatctgtttgaatatggactgaaataatggagcccgagcccggccctatacgggct 4470000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 25096670 - 25096590
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctg-taataatagagcccgagcccggccctatactggct 128  Q
    |||||||| |||||||||||||||||| |||||| |||| ||||||  |||||| |||||||||||||||||||||| ||||    
T  25096670 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaataat-gagcccgagcccggccctatacgggct 25096590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 9471731 - 9471651
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| ||| |||||||||||||| | |||| |||| |||||| || |||||||||||||||||||||| ||| ||||    
T  9471731 gggcttttaaggcccgggctaaaaagcccagtttgaatatgggctgaaaaaatagagcccgagcccggccctttacgggct 9471651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 15613349 - 15613440
Alignment:
Q  36 cgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||||  ||||||||| |||||||||||||||  | ||||||||||| ||||   || |||||||||||||||||||||||||| ||||    
T  15613349 cgaacgggcaacgggcttttgagggccgggctaaaatcc-cggtttaaatatgggcctaaaaaatagagcccgagcccggccctatacgggct 15613440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 25458799 - 25458911
Alignment:
Q  31 cgggtcgaacgggctgcgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggctaa 130  Q
    |||||||| || | |||||| ||||||||  ||||||||||||  |  ||||||||||||||  ||||||||||||| | |||  |||||||| ||||||    
T  25458799 cgggtcgagcgagttgcgggttttttaggatcgggctaaaaagtcctatttaaatacgggctagaataatagagcccaaacccaaccctatacgggctaa 25458898  T
Q  131 cgggccagcccgc 143  Q
     ||||||||||||    
T  25458899 tgggccagcccgc 25458911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 42730071 - 42730143
Alignment:
Q  47 cgggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccct 119  Q
    ||||||||| ||||||||||| |||||| | |||| |||| |||||| || ||||||||||||||||||||||    
T  42730071 cgggcttttaagggccgggctgaaaagccctgtttgaatatgggctgaaaaaatagagcccgagcccggccct 42730143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 17921583 - 17921513
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccct 119  Q
    |||||||| ||||||||||||||||||  ||||| |||| |||||| || ||||||||||||||||||||||    
T  17921583 gggcttttaagggccgggctaaaaagcctggtttgaatatgggctggaa-aatagagcccgagcccggccct 17921513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 20921943 - 20922017
Alignment:
Q  50 gctttttagggccgggct-aaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatac 123  Q
    ||||||| |||||| ||| ||||||| ||||||||||| |||||| |||||| |||||||||  |||||||||||    
T  20921943 gcttttttgggccgagctgaaaaagcccggtttaaatatgggctggaataattgagcccgagtgcggccctatac 20922017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 5272016 - 5271939
Alignment:
Q  51 ctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccctatactggct 128  Q
    |||||||| | |||||| |||||| || |||||||| || | | || ||| |||||||||||||||||||||| ||||    
T  5272016 ctttttagagtcgggctgaaaagcccgctttaaatatggaccggaaaaatggagcccgagcccggccctatacgggct 5271939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 20922764 - 20922801
Alignment:
Q  37 gaacgggctgcgggctttttagggccgggctaaaaagc 74  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  20922764 gaacgggctacgggctttttcgggccgggctaaaaagc 20922801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 9835 - 9906
Alignment:
Q  48 gggctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagcccggccct 119  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||| || ||  ||||||||||||||||||    
T  9835 gggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccct 9906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 9822 - 9884
Alignment:
Q  51 ctttttagggccgggctaaaaagctcggtttaaatacgggctgtaataatagagcccgagccc 113  Q
    |||||||||  ||| ||||||||| | ||||||||||| |||  |||||||||||||||||||    
T  9822 ctttttaggatcggactaaaaagccctgtttaaatacgagctcaaataatagagcccgagccc 9884  T

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Target: scaffold0661 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0661
Description:

Target: scaffold0661; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 1588 - 1616
Alignment:
Q  46 gcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||||||||||||||||||||||    
T  1588 gcgggctttttagggccgggctaaaaagc 1616  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 103133 - 103161
Alignment:
Q  46 gcgggctttttagggccgggctaaaaagc 74  Q
    |||||||||||||||||||||||||||||    
T  103133 gcgggctttttagggccgggctaaaaagc 103161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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