View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_low_17 (Length: 340)
Name: NF13214_low_17
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 55908013 - 55907697
Alignment:
| Q |
9 |
gacatcatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatatta |
108 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55908013 |
gacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcgtctatatta |
55907914 |
T |
|
| Q |
109 |
taataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaaggattac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55907913 |
taataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaaggattac |
55907814 |
T |
|
| Q |
209 |
tactactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagt |
308 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
55907813 |
tactactgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaacaaatgagagaatt |
55907714 |
T |
|
| Q |
309 |
caaagttgtaatatttt |
325 |
Q |
| |
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||||||||||||||||| |
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| T |
55907713 |
caaagttgtaatatttt |
55907697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 219 - 319
Target Start/End: Original strand, 547943 - 548043
Alignment:
| Q |
219 |
gtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgta |
318 |
Q |
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|||||||||||||||||||||||||||| |||| ||| ||| ||||| |||||| |||||| |||||||||||||| ||||||| ||||||||||| |
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| T |
547943 |
gtcaagttcttcaaggaaagggaagcaaccagatatacaaaccaggtcgttgttacagagagaatcaatgttggaacaagtgagagagttcaaagttgta |
548042 |
T |
|
| Q |
319 |
a |
319 |
Q |
| |
|
| |
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|
| T |
548043 |
a |
548043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 325
Target Start/End: Complemental strand, 3437755 - 3437642
Alignment:
| Q |
212 |
tactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaa |
311 |
Q |
| |
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|||||| ||||||| ||||||| ||||||||||||||||| ||||||| || | || ||| ||| || ||| |||||||||| ||||||| ||||| |
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| T |
3437755 |
tactaaggtcaagtacttcaagtaaagggaagcaatcagagataagaattagatagcggtcatggagaaaatcaaagttggaacaactgagagaggtcaa |
3437656 |
T |
|
| Q |
312 |
agttgtaatatttt |
325 |
Q |
| |
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||||||||| |||| |
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| T |
3437655 |
agttgtaatctttt |
3437642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 547773 - 547908
Alignment:
| Q |
40 |
aacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcggagct |
139 |
Q |
| |
|
||||||| || |||||| |||||||||||| | | ||| || || ||||| | ||||||| ||||| |||| ||| || | ||||||||||||||||| |
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| T |
547773 |
aacatcacaaactcttcgagaaactcacaactttgacacaagtgaaaaagcaatgagtcatttatatagtaatgaccagataaattaaccttgcggagct |
547872 |
T |
|
| Q |
140 |
taggaagcaccattgccatagtctttacccaaacat |
175 |
Q |
| |
|
|||||||| | ||| ||||| |||||||| ||||| |
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|
| T |
547873 |
taggaagcgctgttgacatagcctttaccccaacat |
547908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 1527472 - 1527362
Alignment:
| Q |
37 |
ttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcgga |
136 |
Q |
| |
|
|||||||||| || ||||| |||||| ||||||| ||||| || |||||||| ||||||||| | || | || ||| ||||||||||||||| ||| |
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| T |
1527472 |
ttcaacatcaaaatctcttgaagaaatacacaatttttacacaagtgcaaaagcaacgagtcatttgcatagtgatgaccagagagattaaccttgtgga |
1527373 |
T |
|
| Q |
137 |
gcttaggaagc |
147 |
Q |
| |
|
||||||||||| |
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|
| T |
1527372 |
gcttaggaagc |
1527362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 325
Target Start/End: Original strand, 1755485 - 1755587
Alignment:
| Q |
223 |
agttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgtaatat |
322 |
Q |
| |
|
||||||||||| |||||||| || |||| ||| || | | ||||||| |||| ||| ||| ||||||||||| ||||||| |||||||||||||| | |
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| T |
1755485 |
agttcttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatct |
1755584 |
T |
|
| Q |
323 |
ttt |
325 |
Q |
| |
|
||| |
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|
| T |
1755585 |
ttt |
1755587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 1036949 - 1036633
Alignment:
| Q |
9 |
gacatcatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatatta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1036949 |
gacatcatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcgtctatatta |
1036850 |
T |
|
| Q |
109 |
taataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaaggattac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036849 |
taataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaaaatctctactagcgaaaggattac |
1036750 |
T |
|
| Q |
209 |
tactactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagt |
308 |
Q |
| |
|
||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
1036749 |
tactattgaagtcaagttcttcaaggaaaggaaagcaatcagaaataagaacaagatcattgttacatatagaagcaatgttggaacaaatgagagaagt |
1036650 |
T |
|
| Q |
309 |
caaagttgtaatatttt |
325 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
1036649 |
caaagttgtaatatttt |
1036633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 17627281 - 17627169
Alignment:
| Q |
48 |
aacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgagagattaaccttgcggagcttaggaagc |
147 |
Q |
| |
|
||||||||| |||||||||||||| ||||| || ||||||||| | |||||| ||||| |||| || || | ||| | ||||||||||||||||||| |
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|
| T |
17627281 |
aacctcttcgagaaactcacaatttttacacaagtgcaaaagtaatgagtcacttatatcgtaatgacgagataaatttatcttgcggagcttaggaagc |
17627182 |
T |
|
| Q |
148 |
accattgccatag |
160 |
Q |
| |
|
||||||| ||||| |
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|
| T |
17627181 |
accattgacatag |
17627169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 44244814 - 44244857
Alignment:
| Q |
34 |
catttcaacatcataacctcttcaagaaactcacaattcttaca |
77 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44244814 |
catttcaacatcctaacctcttcaagaaactcacaattcttaca |
44244857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 326
Target Start/End: Complemental strand, 8913481 - 8913441
Alignment:
| Q |
286 |
atgttggaacaaatgagagaagtcaaagttgtaatattttt |
326 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
8913481 |
atgttggaacaattgagagaggtcaaagttgtaatcttttt |
8913441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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