View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13214_low_2 (Length: 619)
Name: NF13214_low_2
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Original strand, 33760492 - 33761000
Alignment:
| Q |
19 |
ctaagtcctccaagactatgacccacaagaatcaccttttcattttgtggaattgttgccattagcttcaacaatgtttcagagtattctgaaattgtat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33760492 |
ctaagtcctccaagactatgacccacaagaatcaccttttcattttgcggaattgttgccattagcttcaacaatggttcagagtattctgaaattgtat |
33760591 |
T |
|
| Q |
119 |
caacatcttcaagtttcttcaagttggttccagaagctgaaaggtcaattactgtgaccacatgaccagcagattctaaacgtggcttgatcttgtacca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33760592 |
caacatcttcaagtttcttcaagttggttccagaagctgaaaggtcaagtactgtaaccacatgaccagcagattctaaacgtggcttgatcttgtacca |
33760691 |
T |
|
| Q |
219 |
actccaagcaccatggcaagcaccatgtacaagaacataatgcttcctagcaattaaattttgtgtactcataatgattattgttgttgtggtataatat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33760692 |
actccaagcaccatggcaagcaccatgtacaagaacataatgcttcctagcaattaaattttgtgtactcataatgattattgttgttgtggtataatat |
33760791 |
T |
|
| Q |
319 |
aaaatattgctgcttaatattgttttcaccatccttatcctagagtatatatagacaataaaaagaagaaaagtcaatagattggtcaatattggc---- |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33760792 |
aaaatattgctgcttaatattgttttcaccatccttatcctagagtatatatcgacaataaaaagaagaaaagtcaatagattggtcgatattggcatat |
33760891 |
T |
|
| Q |
415 |
---------atatgttgcattgtcaaatttgagttagaagtacagtcggtaggtaaaggcatgtaaccaattaaatttgtaacattctaata--tctctc |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
33760892 |
gttgacaaaatatgttgcattgtcaaatttgagttagaagtacggtcggtaggttgaggcatgtaaccaattaaatttgtaacattctaatatttctttc |
33760991 |
T |
|
| Q |
504 |
ttatactcc |
512 |
Q |
| |
|
||||||||| |
|
|
| T |
33760992 |
ttatactcc |
33761000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 558 - 611
Target Start/End: Original strand, 33762803 - 33762856
Alignment:
| Q |
558 |
attttgaaatgtatggagtatttttattgtgttcttattctctcttttcatctc |
611 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
33762803 |
attttgaaatgtatggagtacttttattgtgttcttattctctcctttcatctc |
33762856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 1777449 - 1777483
Alignment:
| Q |
25 |
cctccaagactatgacccacaagaatcaccttttc |
59 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1777449 |
cctccaaaactatgacccacaagaatcaccttttc |
1777483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 578
Target Start/End: Original strand, 47682766 - 47682799
Alignment:
| Q |
545 |
aaaatttgtttatattttgaaatgtatggagtat |
578 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
47682766 |
aaaatttgtttatattttgaaacgtatggagtat |
47682799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 6833005 - 6832925
Alignment:
| Q |
181 |
tgaccagcagattctaaacgtggcttgatcttgtaccaactccaagcaccatggcaagcaccatgtacaagaacataatgc |
261 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||||| |||| ||||| || || ||||||||| |||||| ||||| |
|
|
| T |
6833005 |
tgaccagatgattctaaacgtggcttaagcttgtaccaattccaggcacccatgccagaaccatgtaccagaacaaaatgc |
6832925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 6842229 - 6842153
Alignment:
| Q |
188 |
cagattctaaacgtggcttgatcttgtaccaactccaagcaccatggcaagcaccatgtacaagaacataatgcttc |
264 |
Q |
| |
|
|||||||||| |||| || | |||||||||||||||||| ||| || | |||||||||| |||||| |||||||| |
|
|
| T |
6842229 |
cagattctaactgtggtttaagcttgtaccaactccaagctccaacgctaacaccatgtactagaacaaaatgcttc |
6842153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University