View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_low_20 (Length: 296)
Name: NF13214_low_20
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 4377832 - 4377564
Alignment:
| Q |
18 |
cacacaattatatggcgaaattttctgctaggaatcaaagtttagaatcaacgaagtttatagcataaagtgttatatattatagtacatcttacaatca |
117 |
Q |
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| T |
4377832 |
cacacaattatatggcgaaattttctgctaggaatcaaagtttagaatcaacgaagtttatagcataaagtgttatatattatagtacatcttacaatca |
4377733 |
T |
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| Q |
118 |
cctacctagctcacaaaataacaaatcaataacataagtaactaccgcaactaagattcgatgagactaaatctcaaatcttaattacaaagcccaatag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4377732 |
cctacctagctcacaaaataacaaatcaataacataagtaactaccgcaactaagattcgatgagactaaatctcaaatcttaattacaaagcccaacag |
4377633 |
T |
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| Q |
218 |
gcctaaccgatatatcaccatttaattacataatgttattttcttatgtgattccgagtatcctctctgc |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
4377632 |
gcctaaccgatatatcaccatttaattacataatgttattttcttatgtgatt-tgagtatcatctctgc |
4377564 |
T |
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