View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13214_low_29 (Length: 224)

Name: NF13214_low_29
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13214_low_29
NF13214_low_29
[»] chr3 (10 HSPs)
chr3 (1-224)||(4582448-4582671)
chr3 (16-174)||(5155224-5155382)
chr3 (1-77)||(4614258-4614335)
chr3 (49-197)||(46490021-46490169)
chr3 (1-197)||(46469631-46469827)
chr3 (26-210)||(46478256-46478440)
chr3 (131-203)||(47414929-47415001)
chr3 (3-95)||(51942045-51942137)
chr3 (7-181)||(16023894-16024068)
chr3 (99-197)||(47398291-47398389)
[»] chr4 (3 HSPs)
chr4 (21-178)||(35160480-35160637)
chr4 (1-146)||(35154069-35154214)
chr4 (4-146)||(15555014-15555156)
[»] chr8 (2 HSPs)
chr8 (1-199)||(9677611-9677809)
chr8 (5-192)||(9693359-9693546)
[»] chr2 (2 HSPs)
chr2 (16-146)||(20154380-20154510)
chr2 (41-179)||(20143500-20143638)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4582671 - 4582448
Alignment:
Q  1 aaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4582671 aaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcg 4582572  T
Q  101 ctgctggctctgacggacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcctttgcttctcatctcgtttctgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4582571 ctgctggctctgacggacccacaagagaacagcttctcgacttccttctctccaaatcaactgatcatctcaactcctttgcttctcatctcgtttctgc 4582472  T
Q  201 catcatctccaatgctgctccctc 224  Q
    ||||||||||||||||||||||||    
T  4582471 catcatctccaatgctgctccctc 4582448  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 5155224 - 5155382
Alignment:
Q  16 atcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcgctgctggctctgacg 115  Q
    ||||||||| |||| ||||  ||||||| ||| ||||||||||||||||| ||||| || || |||||||  || ||||| ||||||||||||||||| |    
T  5155224 atcgccaaacatctgttcttgaaagaattagacaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagg 5155323  T
Q  116 gacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaac 174  Q
    | ||||||  | ||||||||||||||||||| || || ||||| ||||| |||||||||    
T  5155324 gtcccacacaacaacagcttctcgacttcctcctgtccaaatccactgaccatctcaac 5155382  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4614335 - 4614258
Alignment:
Q  1 aaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtg-ttttccccactttcgct 77  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  4614335 aaagtttccctcagaatcgccaaacatcttttctcaaaagaatcagagaagaacattgtgtttttccccactttcgct 4614258  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 197
Target Start/End: Original strand, 46490021 - 46490169
Alignment:
Q  49 aagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttc 148  Q
    |||||||||||||| || |||||||||||||||||||  |||||||| ||||||||||||||||||||  |||||  | |||||||||| |||||||| |    
T  46490021 aagaacattgtgttatcgccactttcgctccaagttgtactcagcatcatcgctgctggctctgacggctccacacaacaacagcttcttgacttcctcc 46490120  T
Q  149 tctctaaatcaactgatcatctcaactcctttgcttctcatctcgtttc 197  Q
      ||||| || || ||||| |||||||| || || ||| | ||||||||    
T  46490121 aatctaactccaccgatcaactcaactcattcgcctctaagctcgtttc 46490169  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 46469631 - 46469827
Alignment:
Q  1 aaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcg 100  Q
    ||||||||||| |  || |||||| |||||||||||||||||||||| |||||| |||||||||| || || || |||||||||  ||||| |||  |||    
T  46469631 aaagtttcccttaacatggccaaacatctcttctcaaaagaatcagacaagaacgttgtgttttcgccgctgtcactccaagttatgctcaacattgtcg 46469730  T
Q  101 ctgctggctctgacggacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcctttgcttctcatctcgtttc 197  Q
    |||||| |||||| || |  |||  | |||| |||||||| ||||| |  || ||||| |  || ||||||||||||||  ||||||||||||||||    
T  46469731 ctgctgcctctgagggtcgtacacaacaacaacttctcgaattcctccgttccaaatccatcgaccatctcaactccttcacttctcatctcgtttc 46469827  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 46478256 - 46478440
Alignment:
Q  26 atctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcgctgctggctctgacggacccacaag 125  Q
    |||||||||| ||||||||||| || ||||| |||||||| |||||||| |||||||||| ||| || || |||||| |||| ||||| || |||||       
T  46478256 atctcttctccaaagaatcagacaacaacatcgtgttttctccactttcactccaagttgtgctaagtataatcgcttctggttctgagggtcccactca 46478355  T
Q  126 agaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcctttgcttctcatctcgtttctgccatcatctcc 210  Q
    | |||| ||| || |||||||||  || ||||| || ||||||||||||| ||| ||||| || |||||||| | |||| |||||    
T  46478356 acaacaacttttcaacttccttcaatccaaatccaccgatcatctcaactacttcgcttcacagctcgtttccgtcatcctctcc 46478440  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 47415001 - 47414929
Alignment:
Q  131 agcttctcgacttccttctctctaaatcaactgatcatctcaactcctttgcttctcatctcgtttctgccat 203  Q
    ||||||||||||||||   ||| ||||| | ||||||||||||||||||||| ||||||||| |||| |||||    
T  47415001 agcttctcgacttcctcggctcaaaatccattgatcatctcaactcctttgcctctcatctcctttcagccat 47414929  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 51942045 - 51942137
Alignment:
Q  3 agtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcat 95  Q
    |||||||||||||||||||||| || | ||||||||| ||||||| || ||||| || ||||| ||| | || || ||||||| |||||||||    
T  51942045 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgccattgtctctgcaagttgtgctcagcat 51942137  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 16023894 - 16024068
Alignment:
Q  7 tccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcgctgctg 106  Q
    |||||||  |||| |||| ||||||| |||||| ||||||| || |||||  ||||||| || || || || |||||||  |||||| | ||||||||||    
T  16023894 tccctcaacatcgtcaaacatctcttttcaaaacaatcagacaataacatcatgttttctccgctatcacttcaagttgttctcagccttatcgctgctg 16023993  T
Q  107 gctctgacggacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcctttg 181  Q
    | || || ||||| |||  | ||||||||||| ||||||| | |||  |||| ||  || |||||||||||||||    
T  16023994 gatccgagggaccgacacaacaacagcttctccacttcctccgctccgaatctaccaataatctcaactcctttg 16024068  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 47398389 - 47398291
Alignment:
Q  99 cgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcctttgcttctcatctcgtttc 197  Q
    ||||||||||||||| || ||||||  | || |||||||||||||||||   || || || ||||| |||||||||||||| || ||||||||| ||||    
T  47398389 cgctgctggctctgagggtcccacacaacaagagcttctcgacttccttgggtccaagtccactgaacatctcaactccttcgcctctcatctcctttc 47398291  T

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Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 35160480 - 35160637
Alignment:
Q  21 caaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcgctgctggctctgacggaccc 120  Q
    |||| |||||||||| ||||||||||| |||||||| |||||||| ||| | || |||||||||| ||||||||| ||| ||||||||||||| ||  |     
T  35160480 caaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcactgctggctctgagggttca 35160579  T
Q  121 acaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcct 178  Q
    |||  | |||||||||| |||||||| |  |  ||||| |||||||||||||||||||    
T  35160580 acacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactcct 35160637  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 35154069 - 35154214
Alignment:
Q  1 aaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcg 100  Q
    |||||||||||||  ||||||||| |||| |||||||| |||||||| ||||| || |||||||| ||  | || |||||||| | |||    || ||||    
T  35154069 aaagtttccctcactatcgccaaacatcttttctcaaaggaatcagaaaagaatatcgtgttttcgcctttgtctctccaagtagtgcttgcaatcatcg 35154168  T
Q  101 ctgctggctctgacggacccacaagagaacagcttctcgacttcct 146  Q
    ||||||||||||||||  ||||| || ||||||||||| |||||||    
T  35154169 ctgctggctctgacggttccacacgacaacagcttctcaacttcct 35154214  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 15555014 - 15555156
Alignment:
Q  4 gtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcgctg 103  Q
    ||||| |||| |||||| ||| |||||||||| ||| || |  | || |||||||||||||| || || ||| | ||||||   |||||||| |||||||    
T  15555014 gtttcactcaaaatcgctaaacatctcttctctaaacaacccaacaacaacattgtgttttcacctctctcgattcaagttattctcagcatcatcgctg 15555113  T
Q  104 ctggctctgacggacccacaagagaacagcttctcgacttcct 146  Q
    |||||||||| ||  |||||    |||| ||||||||||||||    
T  15555114 ctggctctgagggttccacacagcaacaacttctcgacttcct 15555156  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 9677809 - 9677611
Alignment:
Q  1 aaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcg 100  Q
    |||||||||||||   |||||||| |||||||||||||||||||||| || ||| | || ||||| ||| | || ||||||||||  ||||| || ||||    
T  9677809 aaagtttccctcacggtcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcg 9677710  T
Q  101 ctgctggctctgacggacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcctttgcttctcatctcgtttctg 199  Q
    ||||||||||||| || || ||   | ||||||||||||||||||| |  |  ||||| |  ||||||||||||||||| |  ||||||||| ||||||    
T  9677709 ctgctggctctgagggtcctactcaacaacagcttctcgacttcctccgtttcaaatccatcgatcatctcaactccttcgtctctcatctcctttctg 9677611  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 9693546 - 9693359
Alignment:
Q  5 tttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcgctgc 104  Q
    |||||||||  ||||||||| |||||||||||||||||||||| |||||  | || ||||| ||| | || ||||||||||  |||||||| |||||||     
T  9693546 tttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccattgtctctccaagttgttctcagcatcatcgctgt 9693447  T
Q  105 tggctctgacggacccacaagagaacagcttctcgacttccttctctctaaatcaactgatcatctcaactcctttgcttctcatctc 192  Q
    |||||||||||| || ||   | |||||||||| |||||||| |  |  ||||| |  ||||||||||||| |||||  |||||||||    
T  9693446 tggctctgacggtcctactcaacaacagcttcttgacttcctccgtttcaaatccatcgatcatctcaacttctttgtctctcatctc 9693359  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 20154380 - 20154510
Alignment:
Q  16 atcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcgctgctggctctgacg 115  Q
    ||||||||| |||| ||||  ||| ||||||| ||||||||||||||||| ||| | || |||||||||| | ||||| | | ||||||||||||||| |    
T  20154380 atcgccaaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactccaagttgtgttcagcctcaccgctgctggctctgaag 20154479  T
Q  116 gacccacaagagaacagcttctcgacttcct 146  Q
    | ||||||  | |||||||| ||||||||||    
T  20154480 gtcccacacaacaacagcttgtcgacttcct 20154510  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 179
Target Start/End: Original strand, 20143500 - 20143638
Alignment:
Q  41 aatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcgctgctggctctgacggacccacaagagaacagcttctcga 140  Q
    ||||||| |||||||| |||||||| ||||| || |||||| ||| ||||||| | ||||||||||| ||||| |  ||||||  | |||| ||| ||||    
T  20143500 aatcagacaagaacatcgtgttttcgccactatcactccaaattgtgctcagccttatcgctgctggttctgaagatcccacacaacaacaacttgtcga 20143599  T
Q  141 cttccttctctctaaatcaactgatcatctcaactcctt 179  Q
    |||||| | ||  ||||| ||  ||||||| ||||||||    
T  20143600 cttcctccgcttcaaatccaccaatcatcttaactcctt 20143638  T

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