View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13215_high_14 (Length: 311)
Name: NF13215_high_14
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13215_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 293
Target Start/End: Complemental strand, 6265500 - 6265212
Alignment:
| Q |
5 |
ccaagaatataataattaaaaatctaatcttattgggtatattgggaccctttttcacatgggccaaattcgctagaaccctctccctccatattcatct |
104 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6265500 |
ccaaaaatataataattaaaaatctaatcttattgggtatattgggaccctttttcacatgggccaaattcgctagaaccctcttcctccatattcatct |
6265401 |
T |
|
| Q |
105 |
caccttgccttttcttttaatattaatatactagattttgttttgaagcaaataatatactagcattaaagtatgnnnnnnntagtcttagatatattga |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6265400 |
caccttgccttttcttttaatattaatatactagattttgttttgaagcaaataatatactagcattaaagtatgaaaaaaatagtcttagatatattga |
6265301 |
T |
|
| Q |
205 |
tcacatagtgtaagnnnnnnntggaacatttctaaggtatgatccttgagacatgaacaacaaaattattggaccttgccacgggaggc |
293 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6265300 |
tcacatagtgtaagaaaaaaatggaacatttctaaggtatgatccttgagacatgaacaacaaaattattcgaccttgccacgggaggc |
6265212 |
T |
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