View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13215_high_15 (Length: 308)

Name: NF13215_high_15
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13215_high_15
NF13215_high_15
[»] chr8 (9 HSPs)
chr8 (121-308)||(4634863-4635050)
chr8 (55-308)||(12661034-12661287)
chr8 (163-269)||(11696963-11697072)
chr8 (241-308)||(20662995-20663063)
chr8 (241-308)||(30548358-30548426)
chr8 (241-308)||(44213112-44213180)
chr8 (1-37)||(27631369-27631405)
chr8 (1-33)||(11695080-11695112)
chr8 (71-171)||(22946270-22946370)
[»] chr3 (12 HSPs)
chr3 (1-308)||(6093220-6093541)
chr3 (38-269)||(23937144-23937388)
chr3 (59-269)||(30766218-30766431)
chr3 (37-171)||(29201433-29201567)
chr3 (166-269)||(188593-188699)
chr3 (163-269)||(37611473-37611582)
chr3 (241-308)||(918794-918862)
chr3 (241-308)||(44072784-44072852)
chr3 (166-269)||(22759160-22759264)
chr3 (1-37)||(42616065-42616101)
chr3 (55-108)||(52853617-52853670)
chr3 (66-171)||(54513452-54513557)
[»] chr4 (14 HSPs)
chr4 (44-275)||(56541450-56541698)
chr4 (163-269)||(33486459-33486568)
chr4 (163-269)||(43014669-43014778)
chr4 (163-269)||(16895819-16895928)
chr4 (239-308)||(28120261-28120331)
chr4 (241-308)||(10259401-10259469)
chr4 (241-308)||(24077470-24077538)
chr4 (241-308)||(26924340-26924408)
chr4 (241-308)||(43332507-43332575)
chr4 (241-308)||(51452574-51452642)
chr4 (241-308)||(21564986-21565054)
chr4 (1-37)||(16893869-16893905)
chr4 (1-33)||(33488420-33488452)
chr4 (1-33)||(43016630-43016662)
[»] chr7 (15 HSPs)
chr7 (38-269)||(23476692-23476927)
chr7 (141-269)||(42298912-42299043)
chr7 (163-269)||(27840368-27840477)
chr7 (171-269)||(12960469-12960570)
chr7 (241-308)||(20765507-20765575)
chr7 (241-308)||(29491085-29491153)
chr7 (241-308)||(19033723-19033791)
chr7 (241-308)||(20720845-20720913)
chr7 (241-308)||(34282171-34282239)
chr7 (38-95)||(23477027-23477084)
chr7 (256-308)||(33230029-33230082)
chr7 (66-171)||(9149996-9150101)
chr7 (66-171)||(27734535-27734640)
chr7 (163-224)||(42687703-42687764)
chr7 (1-33)||(27838484-27838516)
[»] chr6 (12 HSPs)
chr6 (44-269)||(2624838-2625078)
chr6 (163-269)||(11470851-11470959)
chr6 (241-308)||(250020-250088)
chr6 (241-308)||(12579854-12579922)
chr6 (163-269)||(18389232-18389340)
chr6 (121-269)||(22975834-22975997)
chr6 (121-269)||(23812404-23812567)
chr6 (241-308)||(33979081-33979149)
chr6 (227-269)||(11272683-11272725)
chr6 (66-184)||(34321747-34321865)
chr6 (167-263)||(33300486-33300585)
chr6 (1-37)||(11266555-11266591)
[»] scaffold0103 (1 HSPs)
scaffold0103 (44-232)||(12704-12903)
[»] chr5 (11 HSPs)
chr5 (163-269)||(22602713-22602822)
chr5 (163-269)||(36366203-36366312)
chr5 (241-308)||(37464476-37464544)
chr5 (166-269)||(38041596-38041702)
chr5 (3-37)||(29251710-29251744)
chr5 (141-171)||(38041709-38041739)
chr5 (66-171)||(287210-287315)
chr5 (267-308)||(18037307-18037348)
chr5 (1-33)||(22604674-22604706)
chr5 (66-146)||(35539429-35539509)
chr5 (1-33)||(36368165-36368197)
[»] chr1 (7 HSPs)
chr1 (163-269)||(3929827-3929936)
chr1 (163-269)||(20767410-20767519)
chr1 (163-269)||(26429201-26429310)
chr1 (161-263)||(34266000-34266105)
chr1 (141-171)||(23909934-23909964)
chr1 (66-171)||(48340991-48341096)
chr1 (1-33)||(3931751-3931783)
[»] chr2 (15 HSPs)
chr2 (163-269)||(7364649-7364757)
chr2 (248-308)||(24278957-24279018)
chr2 (241-308)||(11866294-11866362)
chr2 (241-308)||(35357687-35357755)
chr2 (121-170)||(25283332-25283381)
chr2 (198-269)||(32726106-32726180)
chr2 (256-308)||(3711069-3711122)
chr2 (1-37)||(7362777-7362813)
chr2 (141-171)||(1691645-1691675)
chr2 (122-171)||(7984205-7984254)
chr2 (94-147)||(24278883-24278936)
chr2 (66-111)||(45204563-45204608)
chr2 (66-170)||(1514470-1514574)
chr2 (150-206)||(1993135-1993191)
chr2 (66-154)||(36632551-36632639)
[»] scaffold0016 (1 HSPs)
scaffold0016 (71-171)||(101383-101483)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 121 - 308
Target Start/End: Complemental strand, 4635050 - 4634863
Alignment:
Q  121 cttttataatttcgactaatatgtaatcgtaatttgcacattattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaa 220  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4635050 cttttataattttgactaatatgtaatcgtaatttgcacattattggttccaattagtttcatcttaattttaataatgttttcctgaactcatgaacaa 4634951  T
Q  221 aatatatcttttcatgaatcaagacttggtaaagctttcataaatatttgataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4634950 aatatatcttttcatgaatcaatacttggtaaagctttcataaatatttgataaagataaatagtgtttgtgcaatattcattaattt 4634863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 55 - 308
Target Start/End: Complemental strand, 12661287 - 12661034
Alignment:
Q  55 ttcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatt 154  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||  |||||| | | ||  |||||||    | | |||||||||||||||||||    
T  12661287 ttcattttgtgtgatgtaaatattggtgttaattcctttttggtaactcggtgacaacatcactcgcttttat----ttggctaatatgtaatcgtaatt 12661192  T
Q  155 tgcacattattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata---tcttttcatgaatcaagacttggta 251  Q
    |||||||||||||||||||||||||||||||||||| | || |||||||||| |  | |||||||||| |||   | ||||||||||||||||||||| |    
T  12661191 tgcacattattggttccaattagtttcatcttaattattatgatgttttcctagtattatgaacaaaacatatgttgttttcatgaatcaagacttggaa 12661092  T
Q  252 aagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    | |||||||||||||||| |||||| ||   || ||||||||||||||||||||||||    
T  12661091 aggctttcataaatatttggataaatatttctaatgtttgtgcaatattcattaattt 12661034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 11696963 - 11697072
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 259  Q
    |||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  11696963 attggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttc 11697062  T
Q  260 ataaatattt 269  Q
    ||||||||||    
T  11697063 ataaatattt 11697072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 20663063 - 20662995
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  20663063 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 20662995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 30548426 - 30548358
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  30548426 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 30548358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 44213180 - 44213112
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  44213180 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 44213112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27631369 - 27631405
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacctata 37  Q
    ||||||||||||||| |||||||||||||||||||||    
T  27631369 tgtcacccaattgatccgcctatgatcttaacctata 27631405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11695080 - 11695112
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  11695080 tgtcacccaattgattcgtctatgatcttaacc 11695112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 22946370 - 22946270
Alignment:
Q  71 taaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattattggttc 170  Q
    ||||||| ||| | ||||| |||||||||| ||||| |||| |||| |   ||||||||||| || |||||||||||| |||||  ||||| |||| |||    
T  22946370 taaatatgggtatcaatccttttttggtaactctataacaacaacgttcttttttataattttgaataatatgtaatcataattcacacatcattgtttc 22946271  T
Q  171 c 171  Q
    |    
T  22946270 c 22946270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 6093541 - 6093220
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacctataggatgttgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6093541 tgtcacccaattgattagcctatgatcttaacctataggatgttgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaa 6093442  T
Q  101 ttctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacatt-----------attggttccaattagtttcatcttaat 189  Q
     ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||           |||||||||||||||||||||||||||    
T  6093441 ctctatgacaataacgctcacttttataatttcggctaatatgtaatcgtaattttcacattgttattcattcattggttccaattagtttcatcttaat 6093342  T
Q  190 tttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttcataaata-tttgataaagataaatagt 285  Q
    | | || ||| |||||||| |||||||||||||| ||||    ||||||||||||||||||| || |||||||||||||| |||| |||| ||   || |    
T  6093341 tattatgatg-tttcctggtctcatgaacaaaatgtatccatatttcatgaatcaagacttgatagagctttcataaatattttggtaaaaatttctaat 6093243  T
Q  286 gtttgtgcaatattcattaattt 308  Q
    ||||||||||||| |||||||||    
T  6093242 gtttgtgcaatatccattaattt 6093220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 38 - 269
Target Start/End: Original strand, 23937144 - 23937388
Alignment:
Q  38 ggatgttgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgact 137  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||| || ||||||||||||||||||||||  || || |||||||||||| ||||    
T  23937144 ggatgttgtttctttgattcattt-gtgtgatgtaaatattgatgttaaaccatttttggtaattctatgacaatggcgtttgcttttataattttgact 23937242  T
Q  138 aatatgtaatcgtaatttgcacattattggttc-----------caattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata 226  Q
    |||||||||||||||||||||| |||||| |||           || ||||||||||||||||| | || ||||||| |||| |||||||||||||||||    
T  23937243 aatatgtaatcgtaatttgcacgttattgtttctttcattggttcagttagtttcatcttaattattattatgtttttctggtctcatgaacaaaatata 23937342  T
Q  227 t---cttttcatgaatcaagacttggtaaagctttcataaatattt 269  Q
    |   |||||||||||||||||||| ||| |||||||||||||||||    
T  23937343 tctccttttcatgaatcaagacttagtagagctttcataaatattt 23937388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 59 - 269
Target Start/End: Original strand, 30766218 - 30766431
Alignment:
Q  59 ttttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgca 158  Q
    ||||||||||||| ||||||||||||||| |||||||||| | ||||||||| || ||||  |||| ||||||| |||||||||||||||| |||||| |    
T  30766218 ttttgtgtgatgtgaatattggtgttaattcctttttggtgactctatgacactagcgctcgctttgataattttgactaatatgtaatcgaaatttgta 30766317  T
Q  159 cattattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata---tcttttcatgaatcaagacttggtaaagc 255  Q
    ||| ||||||| |||||||||| ||||||||| | ||  ||||| ||||  |||||||||||||||||   ||||||||| |||||||||||||||| ||    
T  30766318 catcattggtttcaattagtttaatcttaattattatgttgtttgcctgatctcatgaacaaaatatatgctcttttcatcaatcaagacttggtaaggc 30766417  T
Q  256 tttcataaatattt 269  Q
    |||  |||||||||    
T  30766418 tttggtaaatattt 30766431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 171
Target Start/End: Original strand, 29201433 - 29201567
Alignment:
Q  37 aggatgttgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgac 136  Q
    |||||| |||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||| ||||||||  |||| || ||||||||||||| | |    
T  29201433 aggatgctgtttctttggttcattttgtgtgatgtgaataatggtgttaatcccttttttgtaactctatgacggtaaccctcacttttataattttggc 29201532  T
Q  137 taatatgtaatcgtaatttgcacattattggttcc 171  Q
    ||| ||||||| ||||||||||||||||| |||||    
T  29201533 taacatgtaattgtaatttgcacattattagttcc 29201567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 188593 - 188699
Alignment:
Q  166 ggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttcata 262  Q
    ||||||||||||||||| ||||||| | || ||||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| | ||||||||    
T  188593 ggttccaattagtttcaacttaattatgatcatgttttcctggtttcatgaacaaagtatatcatcttttcatgaatcaagacttggtagaactttcata 188692  T
Q  263 aatattt 269  Q
    |||||||    
T  188693 aatattt 188699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 37611582 - 37611473
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 259  Q
    ||||||| |||||||||||| ||||||| | || |||||||||||   ||||||||| | ||||||   ||||||||||||||||||||||| |||||||    
T  37611582 attggtttcaattagtttcaacttaattatgatcatgttttcctgatttcatgaacatagtatatcctcttttcatgaatcaagacttggtagagctttc 37611483  T
Q  260 ataaatattt 269  Q
    ||||||||||    
T  37611482 ataaatattt 37611473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 918794 - 918862
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  918794 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 918862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 44072852 - 44072784
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  44072852 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 44072784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 22759264 - 22759160
Alignment:
Q  166 ggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc-ttttcatgaatcaagacttggtaaagctttcataaa 264  Q
    ||||||||||||||| ||||||||| | ||  |||||||     ||| ||||||||||||||| |||||||||||||||||  ||||||| ||| |||||    
T  22759264 ggttccaattagtttaatcttaattattatgttgttttctcaatctcttgaacaaaatatatccttttcatgaatcaagacccggtaaagttttgataaa 22759165  T
Q  265 tattt 269  Q
    |||||    
T  22759164 tattt 22759160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42616101 - 42616065
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacctata 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  42616101 tgtcacccaattgattcgcttatgatcttaacctata 42616065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 52853670 - 52853617
Alignment:
Q  55 ttcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatga 108  Q
    |||||||||| ||||||||||||||| |  |||||||||||||| | |||||||    
T  52853670 ttcattttgtctgatgtaaatattggcgaaaatccctttttggttagtctatga 52853617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 54513452 - 54513557
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattatt 165  Q
    |||||||||||| ||| | ||||| |||||||||| ||||| |||| ||| ||   ||||||||||| |  |||||||||||| |||||  | ||| |||    
T  54513452 tgatgtaaatatgggtatcaatccttttttggtaactctataacaacaacactcttttttataattttggataatatgtaatcataattcacgcatcatt 54513551  T
Q  166 ggttcc 171  Q
    ||||||    
T  54513552 ggttcc 54513557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 44 - 275
Target Start/End: Original strand, 56541450 - 56541698
Alignment:
Q  44 tgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatg 143  Q
    |||||||||  ||||||||||||||||  ||||||| ||||||||| ||||| |||| ||||||||| || | ||| |||||||||||| | |||||||     
T  56541450 tgtttctttccttcattttgtgtgatgcgaatattgatgttaatccttttttcgtaactctatgacagtagcacttgcttttataatttgggctaatata 56541549  T
Q  144 taatcgtaatttgcacatt------------attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata----- 226  Q
    |||||||||||||||||||            |||||||||||||||||||||||||||| | || |||||||||||| |||||||||||||||||         
T  56541550 taatcgtaatttgcacattcttggttccttcattggttccaattagtttcatcttaattattatgatgttttcctggtctcatgaacaaaatatatgttt 56541649  T
Q  227 tcttttcatgaatcaagacttggtaaagctttcataaatatttgataaa 275  Q
    | |||||||||| |||||| ||||||  |||||||||||| ||||||||    
T  56541650 ttttttcatgaaacaagacctggtaagactttcataaataattgataaa 56541698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 33486568 - 33486459
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 259  Q
    |||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  33486568 attggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttc 33486469  T
Q  260 ataaatattt 269  Q
    ||||||||||    
T  33486468 ataaatattt 33486459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 43014778 - 43014669
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 259  Q
    |||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  43014778 attggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttc 43014679  T
Q  260 ataaatattt 269  Q
    ||||||||||    
T  43014678 ataaatattt 43014669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 16895819 - 16895928
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 259  Q
    ||||||||||||||||| || ||||||| | || ||||||||||||  ||||||||||  ||||||   ||||||||||||||||||||||| |||||||    
T  16895819 attggttccaattagttgcaacttaattattatcatgttttcctggtttcatgaacaaggtatatcctcttttcatgaatcaagacttggtagagctttc 16895918  T
Q  260 ataaatattt 269  Q
    ||||||||||    
T  16895919 ataaatattt 16895928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 28120331 - 28120261
Alignment:
Q  239 tcaagacttggtaaagctttcataaatatt-tgataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    ||||||||||||||| |||||||||||||| ||||||||||  ||| ||||||||||||||||||||||||    
T  28120331 tcaagacttggtaaaactttcataaatattctgataaagatttataatgtttgtgcaatattcattaattt 28120261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 10259469 - 10259401
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  10259469 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 10259401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 24077538 - 24077470
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  24077538 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 24077470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 26924408 - 26924340
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  26924408 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 26924340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 43332507 - 43332575
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  43332507 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 43332575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 51452574 - 51452642
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  51452574 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 51452642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 21564986 - 21565054
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||| ||||||||||||||| |||||||||  ||| ||||| ||||||||||||||||||    
T  21564986 aagacttgataaaactttcataaatattttgataaagatttataatgtttatgcaatattcattaattt 21565054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16893869 - 16893905
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacctata 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  16893869 tgtcacccaattgattcgtctatgatcttaacctata 16893905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33488452 - 33488420
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  33488452 tgtcacccaattgattcgtctatgatcttaacc 33488420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43016662 - 43016630
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  43016662 tgtcacccaattgattcgtctatgatcttaacc 43016630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 38 - 269
Target Start/End: Complemental strand, 23476927 - 23476692
Alignment:
Q  38 ggatgttgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgact 137  Q
    |||||||||||||||| ||||||||||  ||||| |||||||||||||| |||||||| |||| ||||||||| || ||||  ||||||||||     ||    
T  23476927 ggatgttgtttctttggttcattttgtaggatgtgaatattggtgttaaccccttttttgtaactctatgacagtagcgctcgcttttataatgatagct 23476828  T
Q  138 aatatgtaatcgtaatttgcacattattggttccaattagtttcatcttaatt-ttaataatgttttcctggactcatgaacaaaatata---tcttttc 233  Q
    |||||||||||||||||| ||| | |||||||||||||||||| ||||||||| |||    | ||||  ||  |||||||||||||||||   | |||||    
T  23476827 aatatgtaatcgtaatttacacttcattggttccaattagtttaatcttaattattatgtttttttttttgttctcatgaacaaaatatatgttattttc 23476728  T
Q  234 atgaatcaagacttggtaaagctttcataaatattt 269  Q
    |||||||||||||||||||  |||| ||||||||||    
T  23476727 atgaatcaagacttggtaagactttgataaatattt 23476692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 141 - 269
Target Start/End: Complemental strand, 42299043 - 42298912
Alignment:
Q  141 atgtaatcgtaatttgcacattattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata---tcttttcatga 237  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||  ||||||||||  |||||| ||||||||||   |||||||| ||    
T  42299043 atgtaatcgtaatttgcacatcattggttccaattagtttaatcttaattattatgttgttttcctgatctcatggacaaaatatatgctcttttcaaga 42298944  T
Q  238 atcaagacttggtaaagctttcataaatattt 269  Q
    |||||||| |||||| | ||| ||||||||||    
T  42298943 atcaagacctggtaatgttttgataaatattt 42298912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 27840368 - 27840477
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 259  Q
    |||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  27840368 attggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttc 27840467  T
Q  260 ataaatattt 269  Q
    ||||||||||    
T  27840468 ataaatattt 27840477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 12960469 - 12960570
Alignment:
Q  171 caattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttcataaatat 267  Q
    |||||||||||| ||||||| | || |||||||||||   ||||||||| | ||||||   ||||||||||||||||||||||| |||||||||||||||    
T  12960469 caattagtttcaacttaattatgatcatgttttcctgatttcatgaacatagtatatcctcttttcatgaatcaagacttggtagagctttcataaatat 12960568  T
Q  268 tt 269  Q
    ||    
T  12960569 tt 12960570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 20765507 - 20765575
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  20765507 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 20765575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 29491085 - 29491153
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  29491085 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 29491153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 19033791 - 19033723
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||| ||  ||| ||||||||||||||||||||||||    
T  19033791 aagacttgataaagctttcataaatattttgataaaaatttataatgtttgtgcaatattcattaattt 19033723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 20720845 - 20720913
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||| ||  ||| ||||||||||||||||||||||||    
T  20720845 aagacttgataaagctttcataaatattttgataaaaatttataatgtttgtgcaatattcattaattt 20720913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 34282239 - 34282171
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||| ||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  34282239 aagacttgataaaactttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 34282171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 23477084 - 23477027
Alignment:
Q  38 ggatgttgtttctttgattcattttgtgtgatgtaaatattggtgttaatcccttttt 95  Q
    |||||||||||||||| |||||||| |  ||||| |||||||||||||| ||||||||    
T  23477084 ggatgttgtttctttggttcattttttaggatgtgaatattggtgttaaccccttttt 23477027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 33230082 - 33230029
Alignment:
Q  256 tttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  33230082 tttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 33230029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 9149996 - 9150101
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattatt 165  Q
    |||||||||||| ||| | ||||| |||||||||| ||||  |||| ||| ||   ||||||||||| |  |||||||||||| |||||  ||||| |||    
T  9149996 tgatgtaaatatgggtatcaatccttttttggtaactctacaacaacaacactcttttttataattttggataatatgtaatcataattcacacatcatt 9150095  T
Q  166 ggttcc 171  Q
    ||||||    
T  9150096 ggttcc 9150101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 27734640 - 27734535
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattatt 165  Q
    |||||||||||| ||| | ||||| |||||||||| ||||  |||| ||| ||   ||||||||||| |  |||||||||||| |||||  ||||| |||    
T  27734640 tgatgtaaatatgggtatcaatccttttttggtaactctacaacaacaacactcttttttataattttggataatatgtaatcataattcacacatcatt 27734541  T
Q  166 ggttcc 171  Q
    ||||||    
T  27734540 ggttcc 27734535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 42687703 - 42687764
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 224  Q
    ||||||||||||||||||||| |||||| ||||  |||||||||   ||| |||||||||||    
T  42687703 attggttccaattagtttcatgttaattgtaatgttgttttcctaatctcttgaacaaaata 42687764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27838484 - 27838516
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  27838484 tgtcacccaattgattcgtctatgatcttaacc 27838516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 44 - 269
Target Start/End: Complemental strand, 2625078 - 2624838
Alignment:
Q  44 tgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatg 143  Q
    |||||||||  ||||||||||||| ||| |||||| ||||| |||||||||| |||| ||||||||| || | ||| |||||||||||| | ||||||||    
T  2625078 tgtttctttcgttcattttgtgtgctgtgaatatttgtgttgatccctttttcgtaactctatgacagtagcacttgcttttataatttgggctaatatg 2624979  T
Q  144 taatcgtaatttgcacatt------------attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata----t 227  Q
    |||| ||||||| ||||||            | ||||||||||||||||| ||||||| || || |||||||| ||| |||||||||||||||||    |    
T  2624978 taattgtaattttcacattttttgttccttcaatggttccaattagtttcttcttaatctt-atgatgttttcgtggtctcatgaacaaaatatatgttt 2624880  T
Q  228 cttttcatgaatcaagacttggtaaagctttcataaatattt 269  Q
     ||||||| |||||||||||||||| ||||||||||||||||    
T  2624879 tttttcataaatcaagacttggtaaggctttcataaatattt 2624838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 11470959 - 11470851
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatctt---ttcatgaatcaagacttggtaaagctttc 259  Q
    |||||||||||||||||||| |||| || | || ||||||||||||  ||||||||||| |||||| |   ||||||||||||||||||||| |||||||    
T  11470959 attggttccaattagtttcaactta-ttatgatcatgttttcctggtttcatgaacaaagtatatcctctgttcatgaatcaagacttggtagagctttc 11470861  T
Q  260 ataaatattt 269  Q
    ||||||||||    
T  11470860 ataaatattt 11470851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 250020 - 250088
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  250020 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 250088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 12579922 - 12579854
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  12579922 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 12579854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 18389340 - 18389232
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 259  Q
    ||||||||||||||||||||  ||| || | || ||||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| ||||||     
T  18389340 attggttccaattagtttcaattta-ttatgatcatgttttcctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttg 18389242  T
Q  260 ataaatattt 269  Q
     |||||||||    
T  18389241 gtaaatattt 18389232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 269
Target Start/End: Complemental strand, 22975997 - 22975834
Alignment:
Q  121 cttttataatttcgactaatatgtaatcgtaatttgcacattattggttcc------------aattagtttcatcttaattttaataatgttttcctgg 208  Q
    |||||||||||| | ||||||||||||||||||||||||||| || |||||            |||||||||||||||||| ||| | |||||||| |||    
T  22975997 cttttataatttgggctaatatgtaatcgtaatttgcacattttttgttccttcagtggctccaattagtttcatcttaatctta-tgatgttttcgtgg 22975899  T
Q  209 actcatgaacaaaatata-----tcttttcatgaatcaagacttggtaaagctttcataaatattt 269  Q
     |||||||||||||||||     | ||||||| ||||||||| ||||||  |||||||||||||||    
T  22975898 tctcatgaacaaaatatatgtttttttttcataaatcaagac-tggtaagactttcataaatattt 22975834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 269
Target Start/End: Original strand, 23812404 - 23812567
Alignment:
Q  121 cttttataatttcgactaatatgtaatcgtaatttgcacattattggttcc------------aattagtttcatcttaattttaataatgttttcctgg 208  Q
    |||||||||||| | ||||||||||||||||||||||||||| || |||||            |||||||||||||||||| ||| | |||||||| |||    
T  23812404 cttttataatttgggctaatatgtaatcgtaatttgcacattttttgttccttcagtggctccaattagtttcatcttaatctta-tgatgttttcgtgg 23812502  T
Q  209 actcatgaacaaaatata-----tcttttcatgaatcaagacttggtaaagctttcataaatattt 269  Q
     |||||||||||||||||     | ||||||| ||||||||| ||||||  |||||||||||||||    
T  23812503 tctcatgaacaaaatatatgtttttttttcataaatcaagac-tggtaagactttcataaatattt 23812567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 33979081 - 33979149
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||| ||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  33979081 aagacttgataaaactttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 33979149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 11272683 - 11272725
Alignment:
Q  227 tcttttcatgaatcaagacttggtaaagctttcataaatattt 269  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  11272683 tcttttcatgaatcaagatttggtagagctttcataaatattt 11272725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 184
Target Start/End: Original strand, 34321747 - 34321865
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattatt 165  Q
    |||||||||||| ||| | ||||| |||||||||| ||||| |||| ||| ||   ||||||||||| |  |||| ||||||| |||||  ||||| |||    
T  34321747 tgatgtaaatatgggtatcaatccttttttggtaactctataacaacaacactcttttttataattttggataatgtgtaatcataattctcacatcatt 34321846  T
Q  166 ggttccaattagtttcatc 184  Q
    ||||||||||  |||||||    
T  34321847 ggttccaattgttttcatc 34321865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 33300486 - 33300585
Alignment:
Q  167 gttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatat---cttttcatgaatcaagacttggtaaagctttcataa 263  Q
    |||||||||||||| ||||||||| | ||  ||| ||| ||  ||||||||||||||||||   ||||||||||||||||||  ||||| ||||| ||||    
T  33300486 gttccaattagtttaatcttaattattatgttgtgttcttgatctcatgaacaaaatatatgctcttttcatgaatcaagaccaggtaaggctttgataa 33300585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11266555 - 11266591
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacctata 37  Q
    |||||||||||||||||  ||||||||||||||||||    
T  11266555 tgtcacccaattgattcttctatgatcttaacctata 11266591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 232
Target Start/End: Original strand, 12704 - 12903
Alignment:
Q  44 tgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatg 143  Q
    |||||||||  ||||||||||||| ||| |||||| ||||| |||||||||| |||| ||||||||| || | ||| |||||||||||| | ||||||||    
T  12704 tgtttctttcgttcattttgtgtgctgtgaatatttgtgttgatccctttttcgtaactctatgacagtagcacttgcttttataatttgggctaatatg 12803  T
Q  144 taatcgtaatttgcacattat------------tggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatcttt 231  Q
    ||||||||||||||||||| |            |||||||||||| |||||||||||| || || |||||||| ||| |||||||||||||||||| |||    
T  12804 taatcgtaatttgcacattttttgttccttcggtggttccaattaatttcatcttaatctt-atgatgttttcgtggtctcatgaacaaaatatatgttt 12902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 22602822 - 22602713
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 259  Q
    |||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  22602822 attggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttc 22602723  T
Q  260 ataaatattt 269  Q
    ||||||||||    
T  22602722 ataaatattt 22602713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 36366312 - 36366203
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 259  Q
    ||||||| |||||||||||| ||||||| | || |||||||||||   ||| ||||||| ||||||   |||||||||||||||||||||||||||||||    
T  36366312 attggtttcaattagtttcaacttaattatgatcatgttttcctgatttcaggaacaaagtatatcctattttcatgaatcaagacttggtaaagctttc 36366213  T
Q  260 ataaatattt 269  Q
    ||||||||||    
T  36366212 ataaatattt 36366203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 37464476 - 37464544
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| ||||| |||||||||||||| |||||||||  ||| | ||||||||||||||||||||||    
T  37464476 aagacttgataaagttttcataaatattttgataaagatttataatttttgtgcaatattcattaattt 37464544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 38041702 - 38041596
Alignment:
Q  166 ggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatat---cttttcatgaatcaagacttggtaaagctttcata 262  Q
    ||||||||||||||| ||||||||| | ||  |||||||     ||| ||||||||||||||   ||||| ||||||||||||  ||||||||||| |||    
T  38041702 ggttccaattagtttaatcttaattattatgttgttttctcaatctcgtgaacaaaatatatgctctttttatgaatcaagacccggtaaagctttgata 38041603  T
Q  263 aatattt 269  Q
    |||||||    
T  38041602 aatattt 38041596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 29251744 - 29251710
Alignment:
Q  3 tcacccaattgattcgcctatgatcttaacctata 37  Q
    |||||||||||||| ||||||||||||||||||||    
T  29251744 tcacccaattgattagcctatgatcttaacctata 29251710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 38041739 - 38041709
Alignment:
Q  141 atgtaatcgtaatttgcacattattggttcc 171  Q
    |||||||||||||||||||||||||||||||    
T  38041739 atgtaatcgtaatttgcacattattggttcc 38041709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 287315 - 287210
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattatt 165  Q
    |||||||||||| ||| | ||||| |||||||||| ||||  |||| ||| ||   ||||||||||| |  |||||||||||| |||||  ||||| |||    
T  287315 tgatgtaaatatgggtatcaatccttttttggtaactctacaacaacaacactcttttttataattttggataatatgtaatcataattcacacatcatt 287216  T
Q  166 ggttcc 171  Q
    ||||||    
T  287215 ggttcc 287210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 18037348 - 18037307
Alignment:
Q  267 tttgataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    ||||||||||||  ||| ||||||||||||||||||||||||    
T  18037348 tttgataaagatttataatgtttgtgcaatattcattaattt 18037307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22604706 - 22604674
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  22604706 tgtcacccaattgattcgtctatgatcttaacc 22604674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 35539509 - 35539429
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaa 146  Q
    |||||||||||| ||| | ||||| |||||||||| ||||| |||| ||| |||  ||||||||||| |  ||||||||||    
T  35539509 tgatgtaaatatgggtatcaatccttttttggtaactctataacaacaacacttttttttataattttggataatatgtaa 35539429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36368197 - 36368165
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  36368197 tgtcacccaattgattcgtctatgatcttaacc 36368165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 3929936 - 3929827
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 259  Q
    |||||||||||||||||||| ||||||| | ||  |||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  3929936 attggttccaattagtttcaacttaattatgatcgtgttttcctggtttcatgaacaaagtatatcatcttttcatgaatcaagacttggtagagctttc 3929837  T
Q  260 ataaatattt 269  Q
    ||||||||||    
T  3929836 ataaatattt 3929827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 20767410 - 20767519
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 259  Q
    |||||||||||||||||||| | ||||| | || ||||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| |||||||    
T  20767410 attggttccaattagtttcaacctaattatgatcatgttttcctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttc 20767509  T
Q  260 ataaatattt 269  Q
    ||||||||||    
T  20767510 ataaatattt 20767519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 26429310 - 26429201
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 259  Q
    |||||||||||||||||||| ||||||| | || ||||||| |||   ||||||||| | ||||||   ||||||||||||||||||||||| |||||||    
T  26429310 attggttccaattagtttcaacttaattatgatcatgtttttctgttttcatgaacatagtatatcctcttttcatgaatcaagacttggtagagctttc 26429211  T
Q  260 ataaatattt 269  Q
    ||||||||||    
T  26429210 ataaatattt 26429201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 34266105 - 34266000
Alignment:
Q  161 ttattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata---tcttttcatgaatcaagacttggtaaagctt 257  Q
    |||||||||||||||||||| ||||||||| | ||  ||| ||| ||  |||||||||||||||||   |||||||||||||||| || |||||| ||||    
T  34266105 ttattggttccaattagtttaatcttaattattatgttgtgttcttgatctcatgaacaaaatatatgctcttttcatgaatcaatacctggtaaggctt 34266006  T
Q  258 tcataa 263  Q
    | ||||    
T  34266005 tgataa 34266000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 23909964 - 23909934
Alignment:
Q  141 atgtaatcgtaatttgcacattattggttcc 171  Q
    |||||||||||||||||||||||||||||||    
T  23909964 atgtaatcgtaatttgcacattattggttcc 23909934  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 48340991 - 48341096
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattatt 165  Q
    |||||||||||| ||| | ||||| |||||||||| ||||| |||| |||  ||  |||| |||||| |  |||||||||||| |||||  ||||| |||    
T  48340991 tgatgtaaatatgggtatcaatccttttttggtaactctataacaaaaacatttttttttgtaattttggataatatgtaatcataattcacacatcatt 48341090  T
Q  166 ggttcc 171  Q
    ||||||    
T  48341091 ggttcc 48341096  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3931783 - 3931751
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  3931783 tgtcacccaattgattcgtctatgatcttaacc 3931751  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 7364649 - 7364757
Alignment:
Q  163 attggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttc 259  Q
    ||||||||||||||||||||  ||| || | || ||||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| ||||||     
T  7364649 attggttccaattagtttcaattta-ttatgatcatgttttcctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagctttg 7364747  T
Q  260 ataaatattt 269  Q
     |||||||||    
T  7364748 gtaaatattt 7364757  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 24278957 - 24279018
Alignment:
Q  248 ggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  24278957 ggtaaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 24279018  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 11866362 - 11866294
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| ||||| |||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  11866362 aagacttgataaagttttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 11866294  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 35357755 - 35357687
Alignment:
Q  241 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||| ||||||||||||||||    
T  35357755 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtacaatattcattaattt 35357687  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 25283381 - 25283332
Alignment:
Q  121 cttttataatttcgactaatatgtaatcgtaatttgcacattattggttc 170  Q
    |||||||||||| | ||||||||||||||||||||| |||||||||||||    
T  25283381 cttttataattttggctaatatgtaatcgtaatttgtacattattggttc 25283332  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 32726180 - 32726106
Alignment:
Q  198 tgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttcataaatattt 269  Q
    ||||||||||| ||||||| |||||| ||||   |||||||||||||||||||| || ||||||| |||||||||    
T  32726180 tgttttcctggtctcatgagcaaaatgtatccctttttcatgaatcaagacttgatagagctttcgtaaatattt 32726106  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 3711069 - 3711122
Alignment:
Q  256 tttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 308  Q
    |||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  3711069 tttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 3711122  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7362777 - 7362813
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacctata 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  7362777 tgtcacccaattgattcgtctatgatcttaacctata 7362813  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 1691675 - 1691645
Alignment:
Q  141 atgtaatcgtaatttgcacattattggttcc 171  Q
    |||||||||||||||||||||||||||||||    
T  1691675 atgtaatcgtaatttgcacattattggttcc 1691645  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 7984254 - 7984205
Alignment:
Q  122 ttttataatttcgactaatatgtaatcgtaatttgcacattattggttcc 171  Q
    |||||||||||   ||||||||||||| |||||||||||| |||||||||    
T  7984254 ttttataattttagctaatatgtaatcttaatttgcacatcattggttcc 7984205  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 24278883 - 24278936
Alignment:
Q  94 ttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaat 147  Q
    ||||||| ||||||||| || |||| |||||||||||||  |||||||||||||    
T  24278883 ttggtaactctatgacagtagcgctcacttttataattttaactaatatgtaat 24278936  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 45204608 - 45204563
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaa 111  Q
    |||||||||||| ||| | ||||| |||||||||||||||||||||    
T  45204608 tgatgtaaatatgggtatcaatccttttttggtaattctatgacaa 45204563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 1514574 - 1514470
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattatt 165  Q
    |||||||||||| ||| | ||||| |||||||||| ||||  |||| ||| ||   ||||||||||| |  ||| ||||||||||||||  ||||| |||    
T  1514574 tgatgtaaatatcggtatcaatccttttttggtaactctacaacaacaacactcttttttataattttggataacatgtaatcgtaattcacacatcatt 1514475  T
Q  166 ggttc 170  Q
    |||||    
T  1514474 ggttc 1514470  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 1993191 - 1993135
Alignment:
Q  150 taatttgcacattattggttccaattagtttcatcttaattttaataatgttttcct 206  Q
    |||| |||||||||||||||| ||||||| |||| |||||| ||||  |||||||||    
T  1993191 taatctgcacattattggttcaaattagtatcatgttaattataatgttgttttcct 1993135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 36632639 - 36632551
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatt 154  Q
    |||||||||||| ||| | ||||  |||||||||| ||||| |||||||| ||   ||||||||||| |  |||||||||||| |||||    
T  36632639 tgatgtaaatatgggtatcaatcattttttggtaactctataacaataacactctattttataatttgggataatatgtaatcataatt 36632551  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 101383 - 101483
Alignment:
Q  71 taaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattattggttc 170  Q
    ||||||| ||| | ||||| |||||||||| ||||| |||| ||||||   ||||||||||| |  |||||||||||| |||||  |||||||||| |||    
T  101383 taaatatgggtatcaatccttttttggtaactctataacaaaaacgctcttttttataattttggataatatgtaatcataattcacacattattgtttc 101482  T
Q  171 c 171  Q
    |    
T  101483 c 101483  T

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