View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13215_high_4 (Length: 687)
Name: NF13215_high_4
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13215_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 332
Target Start/End: Original strand, 7108970 - 7109285
Alignment:
| Q |
17 |
agatcggttgcctctcaagtgaggttgatacactctttgatttgtctttgttgaataaatcctctttgatgattagaaatgaggttaggcatgattctag |
116 |
Q |
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| T |
7108970 |
agatcgggtgcctctcaagtgaggttgatgcactctttgatttgtctgtgttgaataaattctctttgctgcttagaaatgaggttaggcatgattctag |
7109069 |
T |
|
| Q |
117 |
ctaacctttcagcaatcactttggttataattttaaacttgaagttatctaaagctataggcctatattgctccacacagtcaacaccttgaaacttagg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
7109070 |
ctaacctttcagcaatcactttggttataattttaaacttgaagttatctaaagctataggtctatattgctccacacagtcaataccttgaaacttagg |
7109169 |
T |
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| Q |
217 |
tatgggaataataacattggcattgtagttagggagcatccagtcatctacaaagaaatttaaaaccgcattagttacatcattattcacattgttccaa |
316 |
Q |
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| T |
7109170 |
tatgggaataataacattggcattgtagttagggagcatccaatcatctacaaagaaatttaaaaccgcattagttacatcagtattcacattgttccaa |
7109269 |
T |
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| Q |
317 |
taagtttggaagaaat |
332 |
Q |
| |
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|||||||||||||||| |
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| T |
7109270 |
taagtttggaagaaat |
7109285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 334 - 671
Target Start/End: Original strand, 7109577 - 7109919
Alignment:
| Q |
334 |
agccattgttgattgcaaatggctctatcgagtcatttatattatatgtattaaacatttccaccccttctattcgaccatgtgtaaaaagagcctctag |
433 |
Q |
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| T |
7109577 |
agccattgttgattgcaaatggctctgtcaagtcacttatattatatgtattaaacatttccaccccttctattcgaccatgtgtaaaaagagcctttgg |
7109676 |
T |
|
| Q |
434 |
taggaagatggataagttgattagcctccttccaatcaacaaaatca-----aggatcatccatatttggttcaaagcaaccacacatgtaagagagaca |
528 |
Q |
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| T |
7109677 |
taggaagatggataagttgattagcctccttccaatcaacaaaatcaaccataggatcatccatatttggttcaaagcaaccacacatgtaagagagaca |
7109776 |
T |
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| Q |
529 |
tcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcgatctccannnnnnnaaatttaaagcctaactttaaa |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||||| |
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| T |
7109777 |
tcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcgtttataaactgttcaatctccatttttttaaatctaaagcctaactttaaa |
7109876 |
T |
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| Q |
629 |
tttgttcctttttgaggggtttttggcctaatcccctccctcc |
671 |
Q |
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| T |
7109877 |
tttgttcctttttgaggggtttttggcctaatcccctccctcc |
7109919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 493 - 599
Target Start/End: Complemental strand, 7110878 - 7110772
Alignment:
| Q |
493 |
atttggttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcg |
592 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||| ||| |||||||| |||| | |
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| T |
7110878 |
atttggttcgaagcaaccacacatgtaagagaaacatcacaatttaactcaaaatcttaatgtaatctatttataagtcgcctcgtttataaattgtttg |
7110779 |
T |
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| Q |
593 |
atctcca |
599 |
Q |
| |
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| T |
7110778 |
acctcca |
7110772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 481 - 591
Target Start/End: Original strand, 9987640 - 9987749
Alignment:
| Q |
481 |
aggatcatccatatttggttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcattt |
580 |
Q |
| |
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|||||| |||| ||||| |||||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||| ||| |
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| T |
9987640 |
aggatcgtccacatttgcttcaaagcaatcacacatgtaagagagacatcac-agttaacccaaaaccttaatgtaatgtgtttataactcgtcttgttt |
9987738 |
T |
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| Q |
581 |
ataaactgttc |
591 |
Q |
| |
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||||| ||||| |
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| T |
9987739 |
ataaattgttc |
9987749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 521 - 599
Target Start/End: Original strand, 9986483 - 9986561
Alignment:
| Q |
521 |
gagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcgatctcca |
599 |
Q |
| |
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| T |
9986483 |
gagagacatcataatttatcccaaaactttaatgtaatgtgtttataagtcgcatcatttataaattgtttgacctcca |
9986561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 511 - 593
Target Start/End: Original strand, 9992710 - 9992790
Alignment:
| Q |
511 |
acacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcga |
593 |
Q |
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| T |
9992710 |
acacatgtaaaagagacatcatagtt-aacttaaa-ccttaatgtaatgtgtttataagtcgtcttgtttataaattgttcga |
9992790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 499 - 582
Target Start/End: Original strand, 9991728 - 9991811
Alignment:
| Q |
499 |
ttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttat |
582 |
Q |
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| T |
9991728 |
ttcaaagcaaccacaccactaagggatacatcacaatttaacccaaaactttaatgtaatatgcttagaaatcgtctcgtttat |
9991811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 616 - 664
Target Start/End: Complemental strand, 26169962 - 26169914
Alignment:
| Q |
616 |
gcctaactttaaatttgttcctttttgaggggtttttggcctaatcccc |
664 |
Q |
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| T |
26169962 |
gcctaacttcagatttgttcctttttgagggggttttggcctaatcccc |
26169914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 591
Target Start/End: Original strand, 29873561 - 29873648
Alignment:
| Q |
504 |
agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttc |
591 |
Q |
| |
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|||||||||||| || |||||||| ||||| | | |||||||||||||| | |||| |||||| |||| || || ||||||| ||||| |
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| T |
29873561 |
agcaaccacacaagtgagagagacgtcacactcttactcaaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttc |
29873648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 591
Target Start/End: Original strand, 15841390 - 15841477
Alignment:
| Q |
504 |
agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttc |
591 |
Q |
| |
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|||||||||||| || |||||||||||||| | | || ||||||||||| | ||||||||||| | || ||||| ||| ||| ||||| |
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| T |
15841390 |
agcaaccacacaagtgagagagacatcacactcttacccaaaaccttaaggcaatgtgtttatgaatcctctcacttacaaagtgttc |
15841477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 504 - 552
Target Start/End: Complemental strand, 16524499 - 16524451
Alignment:
| Q |
504 |
agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaa |
552 |
Q |
| |
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|||||||||||| |||||||||||| |||| | | |||||||||||||| |
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| T |
16524499 |
agcaaccacacaagtaagagagacaccacactcttactcaaaaccttaa |
16524451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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