View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13215_high_6 (Length: 559)
Name: NF13215_high_6
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13215_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 35344199 - 35343657
Alignment:
| Q |
1 |
ttcatacatacttcacatcatgtg--gagaaatttattattacaaggaaggtgttttatacatgatttctcnnnnnnnnnnnnnnnntgatctgattgtg |
98 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35344199 |
ttcatacatacttcacatcatgtatagagaaatttagtattacaaggaaggtgttttatacatgatttctcatatatatatatat--tgatctgattgtg |
35344102 |
T |
|
| Q |
99 |
cagttggtagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcattgaggaattatttgcacaagttggagggaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
35344101 |
cagttggtagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcgttgaggagttatttgcacaagttggagggaa |
35344002 |
T |
|
| Q |
199 |
aaacaatttctctgcagaaactaattgctttttctttggatattgctcgtggaatggaatatatacactctcaaggcgtcgttcatcgagaccctaaacc |
298 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
35344001 |
aaacgatttctctacagaaactaattgctttttctttggatattgctcgtggaatggaatatatacactctcaaggcgtcgttcatcgagaccttaaacc |
35343902 |
T |
|
| Q |
299 |
agagaatgtccttattaatggtgactttcaccttaaaattgctgattttggcattgcttgtgaggaagcacactgcgagttacttgctgacgaccttggt |
398 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35343901 |
agagaatgtccttattaatgatgactttcaccttaaaattgctgattttggcattgcttgtgaggaagcacactgcgagttacttgctgacgaccttggt |
35343802 |
T |
|
| Q |
399 |
acctaccgttggatggcacctgagatgatcaaaagaaaatcctatgggagaaaggttgatgtctatagttttgggcttatgttatgggagatgctcaccg |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
35343801 |
acctaccgttggatggcacctgagatgatcaagagaaaatcctatgggagaaaggttgatgtctatagttttgggcttatgttatgggagatgcttaccg |
35343702 |
T |
|
| Q |
499 |
gcaggatgccattcgaggatatgactcccgtccaggctgcttttg |
543 |
Q |
| |
|
| || || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
35343701 |
gtagaataccattcgaggatatgactcccgtccaggctgcttttg |
35343657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 35361757 - 35362299
Alignment:
| Q |
1 |
ttcatacatacttcacatcatgtg--gagaaatttattattacaaggaaggtgttttatacatgatttctcnnnnnnnnnnnnnnnntgatctgattgtg |
98 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
35361757 |
ttcatacatacttcacatcatgtatagagaaatttagtattacaaggaaggtgttttatacatgatttctcatatatatatatat--tgatctgattgtg |
35361854 |
T |
|
| Q |
99 |
cagttggtagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcattgaggaattatttgcacaagttggagggaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
35361855 |
cagttggtagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcgttgaggagttatttgcacaagttggagggaa |
35361954 |
T |
|
| Q |
199 |
aaacaatttctctgcagaaactaattgctttttctttggatattgctcgtggaatggaatatatacactctcaaggcgtcgttcatcgagaccctaaacc |
298 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
35361955 |
aaacgatttctctacagaaactaattgctttttctttggatattgctcgtggaatggaatatatacactctcaaggcgtcgttcatcgagaccttaaacc |
35362054 |
T |
|
| Q |
299 |
agagaatgtccttattaatggtgactttcaccttaaaattgctgattttggcattgcttgtgaggaagcacactgcgagttacttgctgacgaccttggt |
398 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35362055 |
agagaatgtccttattaatgatgactttcaccttaaaattgctgattttggcattgcttgtgaggaagcacactgcgagttacttgctgacgaccttggt |
35362154 |
T |
|
| Q |
399 |
acctaccgttggatggcacctgagatgatcaaaagaaaatcctatgggagaaaggttgatgtctatagttttgggcttatgttatgggagatgctcaccg |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
35362155 |
acctaccgttggatggcacctgagatgatcaagagaaaatcctatgggagaaaggttgatgtctatagttttgggcttatgttatgggagatgcttaccg |
35362254 |
T |
|
| Q |
499 |
gcaggatgccattcgaggatatgactcccgtccaggctgcttttg |
543 |
Q |
| |
|
| || || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
35362255 |
gtagaataccattcgaggatatgactcccgtccaggctgcttttg |
35362299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 86 - 543
Target Start/End: Original strand, 35355194 - 35355651
Alignment:
| Q |
86 |
tgatctgattgtgcagttggtagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcattgaggaattatttgcac |
185 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||| |
|
|
| T |
35355194 |
tgatctgattgtgcagttcgtagcagcatgcagaaagccacctgtttactgtgttatcacagaatatctattagaaggttcattgagggcatatttgcat |
35355293 |
T |
|
| Q |
186 |
aagttggagggaaaaacaatttctctgcagaaactaattgctttttctttggatattgctcgtggaatggaatatatacactctcaaggcgtcgttcatc |
285 |
Q |
| |
|
||||||||||| |||| |||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
35355294 |
aagttggaggggaaaatcatttctttacagaagctaattgctttttctctggatattgctcgtggaatggaatatatacactctcaaggtgtcattcatc |
35355393 |
T |
|
| Q |
286 |
gagaccctaaaccagagaatgtccttattaatggtgactttcaccttaaaattgctgattttggcattgcttgtgaggaagcacactgcgagttacttgc |
385 |
Q |
| |
|
|||||| ||||||||||||||| || |||||||| |||| ||| |||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |
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|
| T |
35355394 |
gagaccttaaaccagagaatgttctcattaatggggactctcatcttaaaattgctgattttggcattgcctgtgaggaagcatactgcgacttacttgc |
35355493 |
T |
|
| Q |
386 |
tgacgaccttggtacctaccgttggatggcacctgagatgatcaaaagaaaatcctatgggagaaaggttgatgtctatagttttgggcttatgttatgg |
485 |
Q |
| |
|
||| |||| |||||| |||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
35355494 |
tgatgaccctggtacttaccgttggatggcacctgaaatgatcagacgaaagtcctatgggagaaaggttgatgtctatagttttgggcttatcttatgg |
35355593 |
T |
|
| Q |
486 |
gagatgctcaccggcaggatgccattcgaggatatgactcccgtccaggctgcttttg |
543 |
Q |
| |
|
|| ||||||||||| | || |||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
35355594 |
gaaatgctcaccggtacaataccatatgaggatatgactcccatccaggctgcgtttg |
35355651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 35358103 - 35358184
Alignment:
| Q |
92 |
gattgtgcagttggtagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcattgagg |
173 |
Q |
| |
|
||||| |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
35358103 |
gattgcgcagtttgtagcagcatgcagaaaagcatatgtttattgtgttatcacagagtatctatcggaaggttcgttgagg |
35358184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 35358026 - 35358088
Alignment:
| Q |
7 |
catacttcacatcatgtggagaaatttattattacaaggaaggtgttttatacatgatttctc |
69 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||||| |||||||||||||| | |||||||| |
|
|
| T |
35358026 |
catacttcacatcatgtagggaaatttactattacaaagaaggtgttttataaacgatttctc |
35358088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 35355123 - 35355185
Alignment:
| Q |
7 |
catacttcacatcatgtggagaaatttattattacaaggaaggtgttttatacatgatttctc |
69 |
Q |
| |
|
|||| |||||||||||| ||||||| || ||| |||||||| || |||||||||| ||||||| |
|
|
| T |
35355123 |
catatttcacatcatgttgagaaatctactataacaaggaatgtattttatacataatttctc |
35355185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 5e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 106 - 543
Target Start/End: Original strand, 3819981 - 3820418
Alignment:
| Q |
106 |
tagcagcatgcagaaacccacctgtttattgtgttatcacagagtatctatcggaaggttcattgaggaattatttgcacaagttggagggaaaaacaat |
205 |
Q |
| |
|
|||| ||| ||||||| ||||| ||||||||| |||||||||| |||||||| |||||||| ||||| |||||||| ||||||||| ||| | || |
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|
| T |
3819981 |
tagctgcaagcagaaatccaccggtttattgtattatcacagaatatctatctgaaggttccttgagagcatatttgcataagttggagcacaaagctat |
3820080 |
T |
|
| Q |
206 |
ttctctgcagaaactaattgctttttctttggatattgctcgtggaatggaatatatacactctcaaggcgtcgttcatcgagaccctaaaccagagaat |
305 |
Q |
| |
|
| |||| ||||| |||| |||||| || | |||||| |||||||||||| |||||||||||||||||| ||| ||||| |||||| ||||||||||||| |
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|
| T |
3820081 |
tcctctacagaagttaatagcttttgctcttgatatttctcgtggaatggcatatatacactctcaaggtgtcattcatagagaccttaaaccagagaat |
3820180 |
T |
|
| Q |
306 |
gtccttattaatggtgactttcaccttaaaattgctgattttggcattgcttgtgaggaagcacactgcgagttacttgctgacgaccttggtacctacc |
405 |
Q |
| |
|
||||| ||| ||| ||||||| ||||||| |||||||||| ||||||||||||||||| ||| || || ||| | || || || | ||| ||||||| |
|
|
| T |
3820181 |
gtcctcattgatgaagactttcgccttaaacttgctgatttcggcattgcttgtgaggaggcagtatgtgacttattggcagatgatcctggcacctacc |
3820280 |
T |
|
| Q |
406 |
gttggatggcacctgagatgatcaaaagaaaatcctatgggagaaaggttgatgtctatagttttgggcttatgttatgggagatgctcaccggcaggat |
505 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||||| ||||||||||||||||| || || |||||||||||||| |||||||| ||| | ||||| | || |
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|
| T |
3820281 |
gttggatggcacctgaaatgatcaaacggaaatcatatgggagaaaggttgacgtgtacagttttgggcttatcttatgggaaatgttgaccggaacaat |
3820380 |
T |
|
| Q |
506 |
gccattcgaggatatgactcccgtccaggctgcttttg |
543 |
Q |
| |
|
|| | ||||||||||| ||| ||||||||||||||| |
|
|
| T |
3820381 |
tccctacgaggatatgaatccaatccaggctgcttttg |
3820418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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