View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13215_high_7 (Length: 519)
Name: NF13215_high_7
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13215_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 83 - 509
Target Start/End: Original strand, 25066062 - 25066491
Alignment:
| Q |
83 |
taagtgtataggctgtttcagattattcaagaaaccaattatgaattaacatgcattgctaaaattgattcttttttcttctgaaaaagacatcactata |
182 |
Q |
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| T |
25066062 |
taagtatatagactgtttcagattattcaagaaaccaattatgaattaacatgcatcgctaaaattgtttcttttttcttctgaaaaagacatcactata |
25066161 |
T |
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| Q |
183 |
gtattatagaatatttgaagcaaacattaagaaattgcgcataactaaacataggttataaaatctaaattataacacaaatttcagaaaaacaaatgat |
282 |
Q |
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| T |
25066162 |
gtattatagaatatttgaagcaaacattaagaaattgcgcataactaaacataggttataaaatctaaattgtaacacaaatttcagaaaaacaaatgat |
25066261 |
T |
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| Q |
283 |
aaatcatgtaaagcaattcataattatgaatgatttaaactattgcatgacaatagaatcaacaaaattaaactaacaattaaaaatattggcaaaattt |
382 |
Q |
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| T |
25066262 |
aaatcatctaaagcaattcataattatgaatgatttaaactattgcatgacaatagaatcaacaaaattaaactaacaattaaaaatattggcaaaattt |
25066361 |
T |
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| Q |
383 |
caactttgaccaaccaattaatcaaccattaattaaagatgatctcac---tcaaaatatacgactttaaccattaatttttcataaattatgtatatgc |
479 |
Q |
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| T |
25066362 |
cgactttgaccaaccaattaatcaaccattaattaaagatgatctcacatgtcaaaatatacgactttaaccattaatttttcataaactatgtatatgt |
25066461 |
T |
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| Q |
480 |
acatacatttaattacaactttgacctttg |
509 |
Q |
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| T |
25066462 |
acatacatttaattacaactttgagctttg |
25066491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 25064820 - 25064925
Alignment:
| Q |
17 |
cacaagttggttatgaagtatcaataaatctcttaaaacaaannnnnnnaagactatgatgctaaataagtgtataggctgtttcagattattcaagaaa |
116 |
Q |
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||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||||||||| ||| |
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| T |
25064820 |
cacaagttggttatgaagtataaagaaatctcttaaaactaaaatttttaagactatgatgctaaataaatgtataggctgtttaagattattcaataaa |
25064919 |
T |
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| Q |
117 |
ccaatt |
122 |
Q |
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| T |
25064920 |
ctaatt |
25064925 |
T |
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