View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13215_high_8 (Length: 466)
Name: NF13215_high_8
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13215_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 214 - 464
Target Start/End: Complemental strand, 6444851 - 6444604
Alignment:
| Q |
214 |
tatatatatgataatcacatgcaaattccacaattggttggtttaaaattgtgaacaagaaattgatcttgtgcttctgcacacgaattccaattagata |
313 |
Q |
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| T |
6444851 |
tatatatatgataatcacatgcaaattccacaattggttggtttaaaattgtgaacaagaaatta---ttgtgcttctgcacaccaattccaattagata |
6444755 |
T |
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| Q |
314 |
agcttgaaatgttgactatgatgaaagatttagaaagtttgaaaacgaaaagaaatgatagtaatagaacctaacctactactacagtctatttcgtaca |
413 |
Q |
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| T |
6444754 |
agcttgaaatgttgactatgatgaaagatttagaaagtttcaaaacgaaaagaaatgatagtaatagaacctaacctactactacagtctatttcgtaca |
6444655 |
T |
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| Q |
414 |
cacacaaaatcgttagtgggacagcagacataaagggaagagaaggtgtaa |
464 |
Q |
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| T |
6444654 |
cacacaaaatcgttagtgggacagcagacataaagggaagagaaggtgtaa |
6444604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 6445073 - 6444998
Alignment:
| Q |
47 |
catgtaaaactattttatactatgtcttgcaaccatctcttaaagataaccaccaactactctatttatattcctt |
122 |
Q |
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| T |
6445073 |
catgtaaaactattttatactatgttttgcaaccatctcttaaagataaccaccaaatactctatttatattcctt |
6444998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 6444975 - 6444919
Alignment:
| Q |
132 |
tactcgatttatattgaacgtcaatgtaaaattagtttaaattggttgtgcatattc |
188 |
Q |
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| T |
6444975 |
tactcgatttatattgaacgtcagtgtaaaattagtttaaattgattttgcatattc |
6444919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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