View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13215_low_1 (Length: 767)
Name: NF13215_low_1
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13215_low_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 232 - 767
Target Start/End: Original strand, 4058354 - 4058889
Alignment:
| Q |
232 |
tgaagacgcaacactatgctctcatataagagatacacattcaagttctaataaactcacacaacttattacaagatcaatttaggtgactagttaaggc |
331 |
Q |
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| T |
4058354 |
tgaagaggcaacactatgctctcgtataagagatacacatacaagttctaataaactcacacaacttattccaagatcaatttaggtgactagttaaggc |
4058453 |
T |
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| Q |
332 |
agaagtaggtgacacaatagcttataataataagcaattatccctaagtcaattgggaactaccccatttggagctctaaggtctaacaagtaattcttc |
431 |
Q |
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| T |
4058454 |
agaagcaggtgacacagtaacttataataataaacaattatccctaagtcaattgggaactaccccatttggacctctaaggtctaacaagtaattcttc |
4058553 |
T |
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| Q |
432 |
acggtcaatttttattgtcatgttccctaaaagtgggttaataaattctaacacaatttactaatatgatatgcatgatggttcatgaaccttaattgtc |
531 |
Q |
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| T |
4058554 |
gcagtcaatttttattgccatgttccctaaaagtgggttaataaagtctaacacaatttactaatatgatatgcatgatggttcatgaacgttaattgtc |
4058653 |
T |
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| Q |
532 |
gccttcatccttttgtggttataagtcactcattcatgtaactattatcattaacaggtgttgggtttattcacaatccataattttttgcacattacaa |
631 |
Q |
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| T |
4058654 |
gccttcatccttttgtggttataagtcactcattcatgtaactattatcattaacaggtgttgggtttattcacaatccaattttttttgcacattacaa |
4058753 |
T |
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| Q |
632 |
cattttttcatagttcacgtatgcataacacatttcacaattttatcaccatcgcataacaaatttgcaaaaattcacattaagaatatttcaaatattc |
731 |
Q |
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| T |
4058754 |
cactttttcattgttcacgtattcataacgcatttcacaattttatcaccatcacataacaaatttgcaaaaattcacattaagaatatttcaaatattc |
4058853 |
T |
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| Q |
732 |
aattaaaagtacatagcaatgattcatatatcatac |
767 |
Q |
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| T |
4058854 |
aattaaaagtacatagaaatgattcatatatcatac |
4058889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 4057176 - 4057329
Alignment:
| Q |
65 |
aatgtgtatatccttaggtcaccaaaaaccgccatgattcgctaat-aaattgataatctctcttagtgatt-aaaaaagttcaaagttttgaattgttt |
162 |
Q |
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| T |
4057176 |
aatgtgtatatccttaggtcaccaaaaaccgccatgattcgctaaacaaattgataatctctcttagtgatttaaaaaagttcaaagttttgaattgttt |
4057275 |
T |
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| Q |
163 |
ctctgagtcattttgttgctttcttagcaaatttatctgccctctattgcttct |
216 |
Q |
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| T |
4057276 |
ctctaagtcattttattgcttgcttagcaaatttatcttccctcttttacttct |
4057329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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