View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13215_low_10 (Length: 417)

Name: NF13215_low_10
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13215_low_10
NF13215_low_10
[»] chr4 (2 HSPs)
chr4 (59-391)||(35478214-35478546)
chr4 (335-376)||(5658041-5658082)
[»] chr1 (4 HSPs)
chr1 (335-390)||(24764172-24764227)
chr1 (335-373)||(51679859-51679897)
chr1 (336-374)||(10854011-10854049)
chr1 (333-380)||(42226695-42226743)
[»] chr7 (4 HSPs)
chr7 (333-390)||(4093299-4093356)
chr7 (336-374)||(41115331-41115369)
chr7 (333-366)||(12424460-12424493)
chr7 (333-374)||(20056553-20056594)
[»] chr6 (3 HSPs)
chr6 (333-374)||(13058493-13058534)
chr6 (337-379)||(11074432-11074474)
chr6 (333-374)||(13040990-13041031)
[»] chr8 (1 HSPs)
chr8 (336-374)||(22484902-22484940)
[»] chr3 (1 HSPs)
chr3 (333-374)||(3267727-3267768)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 59 - 391
Target Start/End: Complemental strand, 35478546 - 35478214
Alignment:
Q  59 atcaaaatccatgttttaatctattataaaagctactaaactatgttgagtatagagtgagcgagtggaggaagtcacccatcgtgctcagattttaaga 158  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  35478546 atcaaaatccatgttttgatctattataaaagctactaaactatgttgagtatacagtgagcgagtggaggaagtcgcccatcgtgctcagattttaaga 35478447  T
Q  159 aattaagagaaattgagtgcatatatactacacaaattgattaatgttagttttttcttccgaaattaaaaaagttagatgagttgagtgactaaggttt 258  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  35478446 aattaaaagaaattgagtgcatatatgctacacaaattgattaatgttagttttttcttccgaaattaaaaaagttagatgagtggagtggctaaggttt 35478347  T
Q  259 tacaagcaacaacccaaattcttagagaaagacggtcgtaagaagttgtgagaggtgacaaaatgaacggaaccgaaatgataaatgaacacaaaaaatc 358  Q
    ||| | |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||  |||||||||||||||||||||||||    
T  35478346 tacgaacaacaacccaaattcttagagaaagacggtcgtaaggagttgtgagaagtgacaaaatgaacggaacaaaaatgataaatgaacacaaaaaatc 35478247  T
Q  359 aaacacaatacagacatcgtatgacactgtagt 391  Q
    |||||||||||||||||||||||||||||||||    
T  35478246 aaacacaatacagacatcgtatgacactgtagt 35478214  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 5658082 - 5658041
Alignment:
Q  335 aatgataaatgaacacaaaaaatcaaacacaatacagacatc 376  Q
    |||||||| |||||||||||||||||||||||| || |||||    
T  5658082 aatgataagtgaacacaaaaaatcaaacacaatgcaaacatc 5658041  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 390
Target Start/End: Complemental strand, 24764227 - 24764172
Alignment:
Q  335 aatgataaatgaacacaaaaaatcaaacacaatacagacatcgtatgacactgtag 390  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||  ||||||||    
T  24764227 aatgataagtgaacacaaaaaatcaaacacaatacagacatcatatatcactgtag 24764172  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 373
Target Start/End: Original strand, 51679859 - 51679897
Alignment:
Q  335 aatgataaatgaacacaaaaaatcaaacacaatacagac 373  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  51679859 aatgataaatgaacacaaaaaaccaaacacaatacagac 51679897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 10854049 - 10854011
Alignment:
Q  336 atgataaatgaacacaaaaaatcaaacacaatacagaca 374  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  10854049 atgataattgaacacaaaaaattaaacacaatacagaca 10854011  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 380
Target Start/End: Complemental strand, 42226743 - 42226695
Alignment:
Q  333 gaaatgataaatgaacaca-aaaaatcaaacacaatacagacatcgtat 380  Q
    |||||||||| |||||||| ||||| ||||||||||||||||| |||||    
T  42226743 gaaatgataattgaacacagaaaaaccaaacacaatacagacagcgtat 42226695  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 4093356 - 4093299
Alignment:
Q  333 gaaatgataaatgaacacaaaaaatcaaacacaatacagacatcgtatgacactgtag 390  Q
    ||||||||||||||||||||||||  |||||||||||||||| | |||| ||||||||    
T  4093356 gaaatgataaatgaacacaaaaaactaaacacaatacagacaccatatgtcactgtag 4093299  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 41115369 - 41115331
Alignment:
Q  336 atgataaatgaacacaaaaaatcaaacacaatacagaca 374  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  41115369 atgataattgaacacaaaaaattaaacacaatacagaca 41115331  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 12424460 - 12424493
Alignment:
Q  333 gaaatgataaatgaacacaaaaaatcaaacacaa 366  Q
    |||||||||||||||||||||| |||||||||||    
T  12424460 gaaatgataaatgaacacaaaatatcaaacacaa 12424493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 20056594 - 20056553
Alignment:
Q  333 gaaatgataaatgaacacaaaaaatcaaacacaatacagaca 374  Q
    ||||||||||||||| |||||||  |||||||||||||||||    
T  20056594 gaaatgataaatgaatacaaaaatgcaaacacaatacagaca 20056553  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 374
Target Start/End: Original strand, 13058493 - 13058534
Alignment:
Q  333 gaaatgataaatgaacacaaaaaatcaaacacaatacagaca 374  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  13058493 gaaatgataaatgaacacacaaaatcaaacacaatacagaca 13058534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 11074474 - 11074432
Alignment:
Q  337 tgataaatgaacacaaaaaatcaaacacaatacagacatcgta 379  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  11074474 tgataaatgaacacaaaaaatcagacacaatacaaacatcgta 11074432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 374
Target Start/End: Original strand, 13040990 - 13041031
Alignment:
Q  333 gaaatgataaatgaacacaaaaaatcaaacacaatacagaca 374  Q
    ||||||||||||||||||| |||| ||||||||||| |||||    
T  13040990 gaaatgataaatgaacacacaaaaccaaacacaatagagaca 13041031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 22484940 - 22484902
Alignment:
Q  336 atgataaatgaacacaaaaaatcaaacacaatacagaca 374  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  22484940 atgataaatgaacacaaaaaattaaacacaatacagaca 22484902  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 3267768 - 3267727
Alignment:
Q  333 gaaatgataaatgaacacaaaaaatcaaacacaatacagaca 374  Q
    |||||||||| ||||||||||||  |||||||||||||||||    
T  3267768 gaaatgataagtgaacacaaaaatccaaacacaatacagaca 3267727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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