View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13215_low_13 (Length: 387)
Name: NF13215_low_13
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13215_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 38093178 - 38093548
Alignment:
| Q |
1 |
tagagaagcaaaagagagaaatttcctaacatgaaatattccttagattggaaata-cagtgagctcgttaagtttgtaattagtgactgtttaaatagg |
99 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38093178 |
tagagaagcaaaagagacaaatttcctaacatgaaatattccttagattggaaaaaacagtgagctcgttaagtttgtaattagtgactgtttaaatagg |
38093277 |
T |
|
| Q |
100 |
aatttgcaaccgatgtgatgagacttttttacatatatagaatatataagtaagcttctctctacatctatgtgttgtattcgattctcataattcaata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
38093278 |
aatttgcaaccgatgtgatgagacttttttacatatatagtatatataagtaagcttctctttacatctatgtgttgtattcgattcttataattcaata |
38093377 |
T |
|
| Q |
200 |
aagaaagtacattcaatctcatttttgtgctctctttcaaattctaaagtatataagtgtatgttcttacaaatggtatcgttagatcggtttgatcgtg |
299 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
38093378 |
aagaaagtacattcaatctcatttttgttttctctttcaaattctaaagtatataagtgtctgttcttacaaatggtatcgttagattggtttgatcgtg |
38093477 |
T |
|
| Q |
300 |
atgatggtgtacaatcatgaaccgttttgaacaattttcatgaaattcttttcatatttcaatcgaaactat |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
38093478 |
atgatggtgtacaatcatgaaccgttttgaacaattttcatgaaattcttctcat-gttcaatcgaaactat |
38093548 |
T |
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