View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13215_low_17 (Length: 294)
Name: NF13215_low_17
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13215_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 27 - 283
Target Start/End: Original strand, 45207033 - 45207294
Alignment:
| Q |
27 |
taattgattaccacattatagtgaaagatatttatcacccnnnnnnnnnnnnnnnnnnttgtatgcagtgaatacaccaaatgtctatctct--gtgttt |
124 |
Q |
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| T |
45207033 |
taattgattaccacattatagtgaaagatatttatcacccaaaaaaaaataaaaaaaattgtatgtagtgaatacaccaaatgtctatctctttgtgttc |
45207132 |
T |
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| Q |
125 |
agcccatttaaaactatctacaataacattataaatttctatnnnnnnnn-taacacatgcatttagaattataaatttggaaggggcaaaaaagtatat |
223 |
Q |
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| T |
45207133 |
agcccatttaaaactatctacaataacattataaatttctataaaaaaaaataacacatgcatttagaattataaatttggaaggggaaaaaaagtatat |
45207232 |
T |
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| Q |
224 |
tttc-----atgacatattttattcaaatatatactacaaaattttgcaattcttttcattatga |
283 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
45207233 |
tttcataagatgacatattttattcaaatat---gtacaaaattttgcaattcttttcaatatga |
45207294 |
T |
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