View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13215_low_18 (Length: 276)
Name: NF13215_low_18
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13215_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 12825576 - 12825310
Alignment:
| Q |
1 |
tgggagtgttggtgtggtggagaggggaataagcgaatccgtaatggtttaagacttatttggcattcgacgattttggttttgtggaaagcaaggaatg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| |
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| T |
12825576 |
tgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttattcggcattctacgagtttggttttgtggaaagcaaggaatg |
12825477 |
T |
|
| Q |
101 |
ataagatttttaataatcggaactcggcggtggatgaaatggtggatgatgtaaaggggttgacttggcggtggtcgttggatagaatttctatgcctcc |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12825476 |
ataagatttttaataatcggaactcagcggtggatgaaatggtggatgatgtaaaggtgttgacttggcggtggtcgttggatagaatttctatgcctcc |
12825377 |
T |
|
| Q |
201 |
ttgtatgtattatgaatggtgttggaatccga-ggaatgccttacgtggctgctttaactacctttg |
266 |
Q |
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| T |
12825376 |
ttgtatgtattatgaatggtgttggaatccgagggaatgccttacgcggctgctttaactacctttg |
12825310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 83 - 227
Target Start/End: Original strand, 35400749 - 35400893
Alignment:
| Q |
83 |
tgtggaaagcaaggaatgataagatttttaataatcggaactcggcggtggatgaaatggtggatgatgtaaaggggttgacttggcggtggtcgttgga |
182 |
Q |
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|||||||||| |||||||||||| |||||||||| || || || |||| |||||||||||||||||| |||| ||| ||||| | ||| | ||||| |
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| T |
35400749 |
tgtggaaagcgaggaatgataaggtttttaataaccgaaatccgtatgtgggtgaaatggtggatgatgtcaaggttttgtcttggagatgggctttgga |
35400848 |
T |
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| Q |
183 |
tagaatttctatgcctccttgtatgtattatgaatggtgttggaa |
227 |
Q |
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| T |
35400849 |
tagaatctctatgccaccgtgtatgtattacgaatggtgttggaa |
35400893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 37035468 - 37035710
Alignment:
| Q |
1 |
tgggagtgttggtgtggtggagaggggaataagcgaatccgtaatggtttaagacttatttggcattcgacgattttggttttgtggaaagcaaggaatg |
100 |
Q |
| |
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|||||||||||| |||| || ||| ||| |||||| || ||| | || |||||| | ||||||||| ||||||| |||||| |||||||| || |||| |
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| T |
37035468 |
tgggagtgttggagtggcggggagaggattaagcgtattcgtcaggggttaagattaatttggcatgttacgatttgggttttatggaaagctagaaatg |
37035567 |
T |
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| Q |
101 |
ataagatttttaataatcggaactcggcggtggatgaaatggtggatgatgtaaaggggttgacttggcggtggtcgttggatagaatttctatgcctcc |
200 |
Q |
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| T |
37035568 |
acaagatttttaataatcggaatccggaggtggtggatattgtggaggatattaaggtattgacttggcggtggtcgttggagataattgcaatgcctcc |
37035667 |
T |
|
| Q |
201 |
ttgtatgtattatgaatggtgttggaatccga-ggaatgcctt |
242 |
Q |
| |
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|||||||| ||||| ||||||||| |||||| |||||||||| |
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| T |
37035668 |
ttgtatgttctatgagtggtgttgggatccgagggaatgcctt |
37035710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 24189605 - 24189660
Alignment:
| Q |
166 |
tggcggtggtcgttggatagaatttctatgcctccttgtatgtattatgaatggtg |
221 |
Q |
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| T |
24189605 |
tggcgatggtctttggatagaatctctatgcctccgtgtatgtactatgaatggtg |
24189660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24189452 - 24189517
Alignment:
| Q |
1 |
tgggagtgttggtgtggtggagaggggaataagcgaatccgtaatggtttaagacttatttggcat |
66 |
Q |
| |
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|||||||||||| ||||||| ||| ||||||| |||| ||||| || ||||||||||||||||| |
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| T |
24189452 |
tgggagtgttggagtggtggcgagcagaataagagaattcgtaagggcctaagacttatttggcat |
24189517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 47820122 - 47820348
Alignment:
| Q |
1 |
tgggagtgttggtgtggtggagaggggaataagcgaatccgtaatggtttaagacttatttggcattcgacgattttggttttgtggaaagcaaggaatg |
100 |
Q |
| |
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|||||||||||||| ||||| ||| |||| ||| | || ||| || |||||| | ||||||||| ||||||||| |||||| |||||||| ||||||| |
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| T |
47820122 |
tgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaatg |
47820221 |
T |
|
| Q |
101 |
ataagatttttaataatcggaactcggcggtggatgaaatggtggatgatgtaaaggggttgacttggcggtggtcgttggatagaatttctatgcctcc |
200 |
Q |
| |
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| ||||| || ||||||||||| | || ||||||| || ||||| ||| | |||| | | |||||| ||||||||||||| | ||| | ||| |||| |
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| T |
47820222 |
acaagatcttcaataatcggaatttggtggtggat---attgtggaggatattaaggtggttacttggtggtggtcgttggagataatggcaatgtctcc |
47820318 |
T |
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| Q |
201 |
ttgtatgtattatgaatggtgttggaatcc |
230 |
Q |
| |
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||||||| ||||| |||||||||||||| |
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| T |
47820319 |
gtgtatgttctatgagtggtgttggaatcc |
47820348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 34774782 - 34774684
Alignment:
| Q |
1 |
tgggagtgttggtgtggtggagaggggaataagcgaatccgtaatggtttaagacttatttggcattcgacgattttggttttgtggaaagcaaggaat |
99 |
Q |
| |
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|||||||||||||| || || ||| |||||||| ||| ||||| || ||||| |||||||||||| | ||||||| ||| || |||||||| |||||| |
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| T |
34774782 |
tgggagtgttggtgcggaggggagaggaataagagaactcgtaacggattaaggcttatttggcatactacgatttgggtgttatggaaagctaggaat |
34774684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11779931 - 11780156
Alignment:
| Q |
1 |
tgggagtgttggtgtggtggagaggggaataagcgaatccgtaatggtttaagacttatttggcattcgacgattttggttttgtggaaagcaaggaatg |
100 |
Q |
| |
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|||||||||||| |||||| |||| || ||||| ||||| |||| || | ||||||||||||| | ||| | | || |||||||| |||||||||| |
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| T |
11779931 |
tgggagtgttggagtggtgtagagagggataagagaatctgtaaggggcttcgacttatttggcacgcaacggtgtgggggttgtggaaggcaaggaatg |
11780030 |
T |
|
| Q |
101 |
ataagatttttaataatcggaactcggcggtggatgaaatggtggatgatgtaaaggggttgacttggcggtggtcgttggatagaatttctatgcctcc |
200 |
Q |
| |
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||| |||||||| ||||| ||| ||||| ||||| ||||| || | |||| | | | ||||| ||||| ||||| |||||||||||||| || |
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| T |
11780031 |
atagagtttttaatggccggaatccggatgtggaagaaattgtggaggagattaaggtttggtcgtggcgttggtctttggacagaatttctatgccccc |
11780130 |
T |
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| Q |
201 |
ttgtatgtattatgaatggtgttgga |
226 |
Q |
| |
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|||||||| |||||||||| ||||| |
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| T |
11780131 |
gtgtatgtactatgaatggttttgga |
11780156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 232
Target Start/End: Complemental strand, 47318661 - 47318630
Alignment:
| Q |
201 |
ttgtatgtattatgaatggtgttggaatccga |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
47318661 |
ttgtatgtattatgaatggtgttggaatccga |
47318630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 38553114 - 38553154
Alignment:
| Q |
70 |
acgattttggttttgtggaaagcaaggaatgataagatttt |
110 |
Q |
| |
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||||||| ||| ||||||||||| ||||||||||||||||| |
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| T |
38553114 |
acgatttgggtgttgtggaaagctaggaatgataagatttt |
38553154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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