View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13215_low_20 (Length: 252)
Name: NF13215_low_20
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13215_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 12825927 - 12826145
Alignment:
| Q |
16 |
atccctgactcttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctccc |
115 |
Q |
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|||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12825927 |
atccctaactcttccaaaccccaccgccacctatcctcctcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctccc |
12826026 |
T |
|
| Q |
116 |
aaccaaaaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccacacacaactccttttggtttgacattga |
215 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12826027 |
aaccaaaaaactcccttctccactcgaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccacacacaactccttttggtttgacattga |
12826126 |
T |
|
| Q |
216 |
gtaaagtctaggatattta |
234 |
Q |
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||||||||||||||||||| |
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| T |
12826127 |
gtaaagtctaggatattta |
12826145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 47819766 - 47819554
Alignment:
| Q |
22 |
gactcttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctcccaaccaa |
121 |
Q |
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||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||| ||| ||| || | | |||||||||||||||| ||| |
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| T |
47819766 |
gactcttccaacccccacctccacctatcctccacatgcgaccacctcatatcctccaaatcacccaaaagattccctattagttgctcctcccaatcaa |
47819667 |
T |
|
| Q |
122 |
aaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccacacacaactccttttggtttgacattgagtaaag |
221 |
Q |
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|||||||| | |||||||||||||| |||| |||| | || ||||| ||||||||||||| ||||| || ||||||||| ||||| || ||| | || |
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| T |
47819666 |
aaaactccctcctccactcaaaatgtcactccgttgaagagccaactacctcccctatctctcccaccaacccctccttttgatttgaaatagagaagag |
47819567 |
T |
|
| Q |
222 |
tctaggatattta |
234 |
Q |
| |
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|||||| |||||| |
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| T |
47819566 |
tctagggtattta |
47819554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 28571318 - 28571269
Alignment:
| Q |
16 |
atccctgactcttccaaaccccacctccacctatcctcttcatgagacca |
65 |
Q |
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||||| ||||| |||||||||||| |||||||||| || ||||||||||| |
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| T |
28571318 |
atccccgactcctccaaaccccacttccacctatcttcctcatgagacca |
28571269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 24189112 - 24188940
Alignment:
| Q |
16 |
atccctgactcttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctccc |
115 |
Q |
| |
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||||| ||||| || ||||||||| |||||||||| || ||||||||||| |||| |||||||| ||| ||| | | || ||||||||||||| |
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| T |
24189112 |
atccccgactcctctaaaccccacttccacctatcttcctcatgagaccaagtcatgccttccaaatctaccaatagatttgcgaagagttgctcctccc |
24189013 |
T |
|
| Q |
116 |
aaccaaaaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccac |
188 |
Q |
| |
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|| ||||||| ||| |||||||||||||||||||| | || | || || ||| |||||||||| || ||||| |
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| T |
24189012 |
aatcaaaaaaatcccgtctccactcaaaatgccactcccttgaagagcctaccacctcccctatgtcacccac |
24188940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 42749392 - 42749487
Alignment:
| Q |
93 |
actcacaaatagttgctcctcccaaccaaaaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccac |
188 |
Q |
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|||| |||| ||||||||||||||| ||||||||||| |||||| ||||| | |||| |||||| | |||| || ||||||||||||| ||||| |
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| T |
42749392 |
actcgcaaaaagttgctcctcccaatcaaaaaactcccatctccaatcaaagttccacaccgttaaagcaccatcctcctcccctatctctcccac |
42749487 |
T |
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