View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13215_low_21 (Length: 252)

Name: NF13215_low_21
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13215_low_21
NF13215_low_21
[»] chr3 (20 HSPs)
chr3 (10-236)||(43101972-43102198)
chr3 (30-192)||(10987508-10987671)
chr3 (26-192)||(2124123-2124289)
chr3 (10-167)||(51825502-51825659)
chr3 (43-186)||(36626854-36626997)
chr3 (10-149)||(54653865-54654004)
chr3 (26-192)||(41387289-41387455)
chr3 (10-193)||(42632784-42632967)
chr3 (17-167)||(43103177-43103327)
chr3 (10-161)||(47807993-47808144)
chr3 (26-149)||(41386224-41386347)
chr3 (10-161)||(13077838-13077989)
chr3 (26-153)||(51824220-51824347)
chr3 (10-153)||(42633781-42633924)
chr3 (51-144)||(10986750-10986843)
chr3 (67-186)||(36627892-36628009)
chr3 (31-151)||(47806916-47807037)
chr3 (10-51)||(23559897-23559938)
chr3 (10-56)||(25585825-25585871)
chr3 (10-56)||(32980444-32980490)
[»] chr4 (18 HSPs)
chr4 (10-192)||(5688493-5688675)
chr4 (10-167)||(33377245-33377402)
chr4 (10-192)||(1273289-1273471)
chr4 (10-149)||(26788600-26788739)
chr4 (26-192)||(37559092-37559258)
chr4 (26-192)||(44126692-44126858)
chr4 (26-159)||(55953741-55953874)
chr4 (26-192)||(44128196-44128356)
chr4 (10-167)||(3217491-3217647)
chr4 (26-192)||(37560156-37560321)
chr4 (63-192)||(55952938-55953067)
chr4 (26-159)||(5687269-5687401)
chr4 (10-167)||(53400263-53400419)
chr4 (47-186)||(4373492-4373631)
chr4 (10-184)||(33376296-33376471)
chr4 (10-51)||(6140357-6140398)
chr4 (10-51)||(34439657-34439698)
chr4 (10-51)||(38370360-38370401)
[»] chr2 (12 HSPs)
chr2 (10-168)||(42028842-42028996)
chr2 (10-180)||(34039341-34039501)
chr2 (15-192)||(15650524-15650701)
chr2 (26-167)||(42027287-42027428)
chr2 (101-183)||(2581952-2582034)
chr2 (159-236)||(42028500-42028577)
chr2 (185-231)||(34039493-34039539)
chr2 (26-65)||(2581897-2581936)
chr2 (37-136)||(10477447-10477546)
chr2 (10-56)||(40174756-40174802)
chr2 (10-50)||(12852964-12853004)
chr2 (15-51)||(21012077-21012113)
[»] chr6 (2 HSPs)
chr6 (26-184)||(8412180-8412338)
chr6 (26-192)||(8411180-8411346)
[»] scaffold2127 (1 HSPs)
scaffold2127 (26-185)||(378-537)
[»] chr1 (14 HSPs)
chr1 (26-185)||(47136550-47136709)
chr1 (26-176)||(16217534-16217684)
chr1 (10-159)||(3978122-3978271)
chr1 (10-169)||(16218357-16218516)
chr1 (26-176)||(47411320-47411470)
chr1 (10-167)||(3979192-3979351)
chr1 (26-153)||(52181200-52181327)
chr1 (10-153)||(25786046-25786189)
chr1 (26-193)||(25787019-25787186)
chr1 (10-159)||(47411062-47411210)
chr1 (10-51)||(36511328-36511369)
chr1 (37-136)||(13568357-13568456)
chr1 (60-121)||(48467377-48467438)
chr1 (141-181)||(48467448-48467488)
[»] chr7 (23 HSPs)
chr7 (26-184)||(22746184-22746342)
chr7 (26-192)||(22060557-22060724)
chr7 (26-192)||(22061651-22061817)
chr7 (26-192)||(22744840-22745006)
chr7 (20-159)||(19279501-19279640)
chr7 (26-192)||(46673583-46673749)
chr7 (26-191)||(7146873-7147038)
chr7 (26-167)||(35127904-35128045)
chr7 (10-167)||(35128073-35128229)
chr7 (15-184)||(7147925-7148091)
chr7 (10-149)||(19278431-19278570)
chr7 (10-161)||(43007536-43007687)
chr7 (29-176)||(43006482-43006629)
chr7 (20-162)||(48672661-48672803)
chr7 (26-139)||(46674843-46674956)
chr7 (10-167)||(48754074-48754229)
chr7 (17-87)||(36702911-36702981)
chr7 (26-192)||(48671171-48671343)
chr7 (100-216)||(1970976-1971092)
chr7 (10-56)||(43936132-43936178)
chr7 (10-167)||(7347101-7347258)
chr7 (10-56)||(14206751-14206797)
chr7 (10-56)||(14215441-14215487)
[»] chr8 (17 HSPs)
chr8 (10-192)||(31623984-31624166)
chr8 (26-159)||(27750510-27750643)
chr8 (10-159)||(38589898-38590047)
chr8 (30-192)||(41867771-41867934)
chr8 (17-176)||(3237502-3237661)
chr8 (30-192)||(43275848-43276010)
chr8 (26-153)||(43277816-43277943)
chr8 (26-136)||(1570118-1570228)
chr8 (30-159)||(4807464-4807593)
chr8 (26-193)||(38590867-38591029)
chr8 (26-85)||(41866988-41867047)
chr8 (26-159)||(31625273-31625406)
chr8 (10-167)||(45385677-45385832)
chr8 (99-192)||(14821992-14822085)
chr8 (30-93)||(14820678-14820741)
chr8 (108-186)||(41867046-41867124)
chr8 (10-51)||(36756142-36756183)
[»] chr5 (11 HSPs)
chr5 (26-186)||(26404072-26404232)
chr5 (26-167)||(10085726-10085867)
chr5 (10-146)||(10084676-10084813)
chr5 (20-153)||(26403395-26403528)
chr5 (10-161)||(1663265-1663418)
chr5 (20-167)||(8762280-8762428)
chr5 (46-159)||(27893911-27894024)
chr5 (101-192)||(19569482-19569573)
chr5 (41-136)||(5062098-5062193)
chr5 (10-51)||(22819514-22819555)
chr5 (10-51)||(32734209-32734250)
[»] scaffold0369 (1 HSPs)
scaffold0369 (59-202)||(13031-13174)
[»] scaffold0007 (1 HSPs)
scaffold0007 (26-193)||(145726-145891)
[»] scaffold0051 (1 HSPs)
scaffold0051 (10-49)||(22205-22244)
[»] scaffold0098 (1 HSPs)
scaffold0098 (10-56)||(42338-42384)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 43101972 - 43102198
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||     
T  43101972 ataattcttctgtcgcttactattttgatcatctccgtttgtattttgcaaaatatgttaactcctttccacgtgccagttaaggttcttgatcaacgga 43102071  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttccaacctcatatccaaaa 209  Q
    | |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| ||||||    
T  43102072 taaatttaaaaagcacacatagcataccgtggactcacaacatacgataatttttattgtcatcttcttccctctttttcttctaacttcatacccaaaa 43102171  T
Q  210 caaaaaacaatagttcagcaactttct 236  Q
    ||||||||||| |||||||||||||||    
T  43102172 caaaaaacaattgttcagcaactttct 43102198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 30 - 192
Target Start/End: Complemental strand, 10987671 - 10987508
Alignment:
Q  30 tattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaa-cacaca 128  Q
    |||||||||| |||| |||| |||||||||||||||||||||| |||||||| ||||||||||| ||  ||||||||||||| |||||||||| ||||||    
T  10987671 tattttggtcctctctgttaatattttgcaaaatctgttaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacaca 10987572  T
Q  129 tggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    |||||||| |||||||||||||||| ||||| || ||| ||||||||||||||||||| |||||    
T  10987571 tggcatacagtggactcacaacataggataacttctatggtcatcttcttccctcttcatcttc 10987508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 2124123 - 2124289
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||| ||||| ||  ||||||||||||| ||||||||| |||    
T  2124123 ttactattttggtcatctccgttagtattttgcaaaatctgttaactccttgtcacatgtcatttaagattagtgatcaacggttggatttaaaaagcac 2124222  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    ||||| |||| |||||| |||||||||| ||||| |  |||| |||||||||||||||||| |||||    
T  2124223 acatgacatatcgtggattcacaacatatgataactcctattttcatcttcttccctcttcatcttc 2124289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 51825659 - 51825502
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||| |||    
T  51825659 ataaatcttctgtcgtttactattttggtcatatccgttagtattttgcaaaatctgttaactcttttccacgtgtcagttaagattggtgatcaatggt 51825560  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttatt 167  Q
    |||||||||||| |||||||| ||||| ||| ||||||| |||| ||| ||| |||||    
T  51825559 tgaatttaaaaagcacacatgacatactgtgaactcacagcataggattattattatt 51825502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 36626854 - 36626997
Alignment:
Q  43 tccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacacacatggcataccgtgga 142  Q
    ||||||||||||||||||||| ||||| ||| ||||||| ||||| ||||| || ||||| |||||||||||||||||| |||| || ||||||||||||    
T  36626854 tccgttagtattttgcaaaatttgttacctcttttccacatgtcatttaagattattgatgaacggttgaatttaaaaagcacagatagcataccgtgga 36626953  T
Q  143 ctcacaacatacgataatttttattgtcatcttcttccctcttc 186  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||    
T  36626954 ctcacaacatatgataacttttattgtcatcttcttccctcttc 36626997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 54654004 - 54653865
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    ||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| || ||||||| ||||||||||| |||||||||||||||    
T  54654004 ataattcttctgtcgtttactattttggtcctctccgttaggattttgcaaaatctgttaattcatttccacatgtcagttaagattcttgatcaacggt 54653905  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaa 149  Q
    || |||||||||  ||||||| ||||| ||||||||||||    
T  54653904 tggatttaaaaagaacacatgccatactgtggactcacaa 54653865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 41387455 - 41387289
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||  || |||| ||||| ||||  ||  ||||||||||||| ||||||||| |||    
T  41387455 ttactattttggtcctctccgttagtattttgcaaaatctgttaactttttgccacatgtcatttaaaattggtgatcaacggttggatttaaaaagcac 41387356  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    || ||||||||||||||||||||||||| ||||| ||  ||  |||||||||||| ||||| |||||    
T  41387355 acttggcataccgtggactcacaacatatgataacttccatcttcatcttcttccatcttcatcttc 41387289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 42632784 - 42632967
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||| ||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||| || |||||||||| ||||| ||  |||||||||||    
T  42632784 ataaatcttatgtcgtttactattttagtcctctccgttagtattttgcaaaatttgttaactctttgccacgtgtcatttaagattggtgatcaacggt 42632883  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttcc 193  Q
    || ||||||||| |   ||||  ||||||||||||||||||||| ||||| ||| ||  |||||||||||| ||||| ||||||    
T  42632884 tggatttaaaaagcctgcatgatataccgtggactcacaacatatgataactttcatgttcatcttcttccatcttcatcttcc 42632967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 43103327 - 43103177
Alignment:
Q  17 ttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaattt 116  Q
    ||||| || |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||    
T  43103327 ttctgccgtttactattttggtcctttccgttagtattttgcaaaatttgttaactcctttccacatgtcagttaagattcttgatcgacggttggattt 43103228  T
Q  117 aaaaaacacacatggcataccgtggactcacaacatacgataatttttatt 167  Q
    ||||| |||||||  ||||  |||||||| ||||||| ||| ||| |||||    
T  43103227 aaaaagcacacataacatattgtggactcccaacatatgatcattcttatt 43103177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 47808144 - 47807993
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||||||||| || ||||||||||| ||||||||| ||| |||||||| |||||||||| ||||||||||||||||||| |   |||||||||||    
T  47808144 ataaatcttctgtcgtttgctattttggtcctctccgttaatatattgcaaaa-ctgttaactcttttccacgtgtcagttaagatcggtgatcaacggt 47808046  T
Q  110 tgaatttaaaaaacacaca-tggcataccgtggactcacaacatacgataatt 161  Q
    || ||||||||| |||||| || |||||||||||||||||||||| |||||||    
T  47808045 tggatttaaaaagcacacactgacataccgtggactcacaacatatgataatt 47807993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 41386224 - 41386347
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| ||||||||| |||||||||| |||||||||||| || |||| ||||| ||||  ||  | ||||||||||| |||||||||||||    
T  41386224 ttactattttggtcctctccgttactattttgcaatatctgttaactctttgccacatgtcatttaatattggtaatcaacggttggatttaaaaaacac 41386323  T
Q  126 acatggcataccgtggactcacaa 149  Q
    ||||||||||||||||||||||||    
T  41386324 acatggcataccgtggactcacaa 41386347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 13077989 - 13077838
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||| ||||| |||||||||||| | ||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||  |   |||||||||      
T  13077989 ataaatcttatgtcgtttactattttggacctcttcgttaatattttgcaaaatctattaactcttttccacgtgtcagttaatatatgtgatcaacgac 13077890  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatt 161  Q
    || ||||||||| |||||||  |||||| ||||||||||||||| |||||||    
T  13077889 tggatttaaaaagcacacattacataccctggactcacaacatatgataatt 13077838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 51824220 - 51824347
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||| ||||| ||||||| |||||||||||| |||||| ||||||||||||| |||||||| |||||  ||  ||||||||||||  ||||||||| |||    
T  51824220 ttaccatttttgtcatctgcgttagtattttacaaaatttgttaactccttttcacgtgtcggttaaaattagtgatcaacggttagatttaaaaagcac 51824319  T
Q  126 acatggcataccgtggactcacaacata 153  Q
    || |||||||||||| ||||||||||||    
T  51824320 acgtggcataccgtgaactcacaacata 51824347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 42633924 - 42633781
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||| ||||| ||| |||||||||| |||| |||||||||| ||||||| ||||||||| || |||| ||||| ||||| ||  | |||||||||    
T  42633924 ataaatcttatgtcgtttattattttggtcctctctgttagtatttggcaaaatttgttaactctttgccacatgtcatttaagattggtaatcaacggt 42633825  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacata 153  Q
    || ||||||||| ||||||| ||||||| ||| |||||||||||    
T  42633824 tggatttaaaaagcacacatagcataccatgggctcacaacata 42633781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 10986750 - 10986843
Alignment:
Q  51 tattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacacacatggcataccgtggact 144  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||| ||  ||||||||||||||||||||||| ||||||||||||| | ||||||    
T  10986750 tattttgcaaaatttgttaactcatttccacatgtcagttaagattaatgatcaacggttgaatttaaaaagcacacatggcatatcatggact 10986843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 186
Target Start/End: Complemental strand, 36628009 - 36627892
Alignment:
Q  67 ttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttat 166  Q
    ||||||| |||| || ||||| ||||| ||  |||| |||||||| ||||||||| ||||||| |||||||||||||||||||||||  |||| || |||    
T  36628009 ttaactcttttctacatgtcatttaagattgatgatgaacggttggatttaaaaagcacacatagcataccgtggactcacaacata--ataacttctat 36627912  T
Q  167 tgtcatcttcttccctcttc 186  Q
    |||||||||||||| |||||    
T  36627911 tgtcatcttcttccttcttc 36627892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 47806916 - 47807037
Alignment:
Q  31 attttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaa--acacaca 128  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |   ||||||| ||||| |||||||||  | |||||    
T  47806916 attttggtcctctccgttagtatcttgcaaaatctattaactccttttcacgtgtcagttaagatcggtgatcaatggttggatttaaaaagcatacaca 47807015  T
Q  129 tggcataccgtggactcacaaca 151  Q
    | ||||| | |||||||||||||    
T  47807016 t-gcatatcatggactcacaaca 47807037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 23559897 - 23559938
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagt 51  Q
    ||||||||||||||| |||||||||||||| |||||||||||    
T  23559897 ataattcttctgtcgtttactattttggtcctctccgttagt 23559938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 25585871 - 25585825
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtatttt 56  Q
    |||| |||||||||| |||||||||| ||||||||||||||| ||||    
T  25585871 ataaatcttctgtcgtttactattttagtcatctccgttagtttttt 25585825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 32980490 - 32980444
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtatttt 56  Q
    |||| ||||||| || |||||||||||||||||||||||||| ||||    
T  32980490 ataaatcttctgccgtttactattttggtcatctccgttagtttttt 32980444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 5688675 - 5688493
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||  |||||||||||    
T  5688675 ataaatcttatgtcgtttactattttggtcatctccgttagtattttgcaaaatttgttaactcatttccacgtgtcacttaagattgatgatcaacggt 5688576  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    || ||||| ||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||| |||||    
T  5688575 tggatttataaagcacacatggcatactgtggactcacaacatatgataacttttattgtcatcttcttccctattcatcttc 5688493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 33377402 - 33377245
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| ||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||  ||||| ||  |||||||||||    
T  33377402 ataaatcttctgccgtttactattttggtcctctccgttagtattttacaaaatctgttaactcctttccacgtgtcgtttaagattggtgatcaacggt 33377303  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttatt 167  Q
    || ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||    
T  33377302 tggatttaaaaagcacacatggcataccgtggactcacaacatatgataattcttatt 33377245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 1273471 - 1273289
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||| ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||  |||||||||||    
T  1273471 ataagtcttatgtcgtttgctattttggtcctctccgttagtattttgcaaaatctgttacctcatttccacgtgtcatttaagattggtgatcaacggt 1273372  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    || ||||||||| ||||||||||||||||||| ||||||||||| ||||| || |||| ||||||| |||||| ||| |||||    
T  1273371 tggatttaaaaagcacacatggcataccgtggtctcacaacataggataacttctattatcatcttgttcccttttcatcttc 1273289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 26788600 - 26788739
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||  |||||||||||    
T  26788600 ataaatcttctgccgtttactattttggtcctctccgttagtattttgcaaaatctgtcaactcatttccacgtgtcagttaagattggtgatcaacggt 26788699  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaa 149  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  26788700 tgaatttaaaaagcacacatgacataccgtggactcacaa 26788739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 37559092 - 37559258
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  || |||| ||||| ||||  ||  ||||||||||||| ||||||||| |||    
T  37559092 ttactattttggtcatctccgttagtattttgcaaaatctgttaactttttgccacatgtcacttaaaattggtgatcaacggttggatttaaaaagcac 37559191  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    |||||||||||||||||||||||||||| ||||| ||  ||  |||||||||||| ||||| |||||    
T  37559192 acatggcataccgtggactcacaacatatgataacttccatcttcatcttcttccatcttcatcttc 37559258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 44126692 - 44126858
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||  | ||| ||  |||||||| ||| |||||||||| ||     
T  44126692 ttactattttggtcttctctgttagtattttgcaaaatctgttaactcctttccacatgtccttcaagattgatgatcaacagttaaatttaaaaagcat 44126791  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    |||| | |||| |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  44126792 acatcggatactgtggactcacaacatatgataatttatattgtcatcttcttccctcttcatcttc 44126858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 55953874 - 55953741
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| || |||||||||||||| |||||||||||| || ||||||||||||| ||||| ||  ||||||||||||||||||||||| |||    
T  55953874 ttactattttggtcctccccgttagtattttgtaaaatctgttaattcatttccacgtgtcatttaagattggtgatcaacggttgaatttaaaaagcac 55953775  T
Q  126 acatggcataccgtggactcacaacatacgataa 159  Q
    |||||||||||||||| ||||||||||| |||||    
T  55953774 acatggcataccgtgggctcacaacatatgataa 55953741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 44128356 - 44128196
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| | ||| ||  ||||||||||||| ||||||||| |||    
T  44128356 ttactattttggtcctctccgttagtattttgcaaaatctgttaactcatttccacatgtcattcaagattggtgatcaacggttggatttaaaaagcac 44128257  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    |||| ||      ||||| ||||||||| |||||||| | || |||||||||||||||||| |||||    
T  44128256 acatagc------tggacacacaacatatgataatttatgttatcatcttcttccctcttcatcttc 44128196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 3217647 - 3217491
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||||||| | |||||||||||||| | |||||||||||||||| ||||||| ||||||||| |||||||||||||||  ||  |||||||||||    
T  3217647 ataaatcttctgttgtttactattttggtcctatccgttagtattttgccaaatctggtaactcctt-ccacgtgtcagttaaaattgatgatcaacggt 3217549  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttatt 167  Q
    || ||||||||| ||||  || ||||||||| |||||||||||| ||||||| |||||    
T  3217548 tggatttaaaaagcacatgtgacataccgtgaactcacaacatatgataattattatt 3217491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 37560321 - 37560156
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    ||||||| |||||| ||||||||| |||||||||| |||||||||||| || |||| ||||| ||||  ||  ||||||| ||||| |||||||||||||    
T  37560321 ttactatcttggtcctctccgttactattttgcaatatctgttaactctttgccacatgtca-ttaatattggtgatcaatggttggatttaaaaaacac 37560223  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    ||||||||||||||||||||||||| || ||||| ||  ||  |||||||| ||| ||||| |||||    
T  37560222 acatggcataccgtggactcacaacgtatgataacttccatcttcatcttcctccatcttcatcttc 37560156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 55952938 - 55953067
Alignment:
Q  63 tctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacacacatggcataccgtggactcacaacatacgataattt 162  Q
    ||||||||||| ||||||||||||| ||||| ||  |||| |||| ||  |||||| || |||||||| ||||||||| ||||||||||||  |||| ||    
T  55952938 tctgttaactcatttccacgtgtcatttaagattggtgataaacgattagatttaataagcacacatgacataccgtgaactcacaacatattataactt 55953037  T
Q  163 ttattgtcatcttcttccctcttcttcttc 192  Q
     |||||||||||||||||||| || |||||    
T  55953038 ctattgtcatcttcttccctcctcatcttc 55953067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 5687269 - 5687401
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||| ||  ||||| ||||| ||  |||||||| ||| ||||| ||||||||    
T  5687269 ttactattttggtcatctccgttattattttgcaaaatctgttaact-attttcatatgtcatttaagattggtgatcaacagttaaatttgaaaaacac 5687367  T
Q  126 acatggcataccgtggactcacaacatacgataa 159  Q
    |||||  ||||| | |||| || ||||| |||||    
T  5687368 acatgatataccattgacttacgacatatgataa 5687401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 53400263 - 53400419
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttag-tattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacgg 108  Q
    |||| |||| ||||| |||| ||||| ||| |||||||||| | |||||||||||| |||| |||||| |||| ||||  ||| | ||  |||||||| |    
T  53400263 ataaatcttatgtcgtttaccattttagtcctctccgttagattttttgcaaaatccgttagctccttgccacatgtcttttaggattggtgatcaacag 53400362  T
Q  109 ttgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttatt 167  Q
    |||||||||||||    |  ||||||||||||||||||||||||  |||||||| ||||    
T  53400363 ttgaatttaaaaa--ttaggtggcataccgtggactcacaacatgtgataatttctatt 53400419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 4373492 - 4373631
Alignment:
Q  47 ttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacacacatggcataccgtggactca 146  Q
    ||||| |||||||||||| ||||||  |||||||||||||| ||| | ||  |||| || || || |||| |||| ||||||||| ||||  ||||||||    
T  4373492 ttagttttttgcaaaatccgttaacctctttccacgtgtcatttaggattggtgattaatggctggatttgaaaagcacacatggtatacaatggactca 4373591  T
Q  147 caacatacgataatttttattgtcatcttcttccctcttc 186  Q
    |||||||  ||||  |  | |||||||||| |||||||||    
T  4373592 caacatataataacctcgactgtcatcttcatccctcttc 4373631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 33376296 - 33376471
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||||||||| |||||||||| ||| ||||||||| | ||||| |||||| |||| ||| |||||  |||||| |||   ||   |||||| |||    
T  33376296 ataaatcttctgtcgtttactattttagtcctctccgttaattttttgaaaaatccgttagctcatttcctagtgtcatttagaattagggatcaatggt 33376395  T
Q  110 tgaatttaaaaaa-cacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctct 184  Q
    ||  |||  |||| |||||||   ||||  ||||||||||||||| ||| | || |||||||||||||||||||||    
T  33376396 tgggttttgaaaagcacacataaaatacaatggactcacaacataggatgacttctattgtcatcttcttccctct 33376471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 6140398 - 6140357
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagt 51  Q
    |||| |||||||||| |||||||||||||||| |||||||||    
T  6140398 ataactcttctgtcgtttactattttggtcatttccgttagt 6140357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 34439698 - 34439657
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagt 51  Q
    |||| ||||||| || ||||||||||||||||||||||||||    
T  34439698 ataaatcttctgccgtttactattttggtcatctccgttagt 34439657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 38370360 - 38370401
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagt 51  Q
    |||| |||||||||| |||| |||||||||||||||||||||    
T  38370360 ataactcttctgtcgtttaccattttggtcatctccgttagt 38370401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 42028996 - 42028842
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |    |||    
T  42028996 ataattcttctgtcgcttactattttggtcttctccgttagtattttgcaaaatctgttaactcctttccacatgtcggttaaggttcttgct----ggt 42028901  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattg 168  Q
    || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  42028900 tggatttaaaaagcacacatggcataccctggactcacaacatacgataatttttattg 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 34039341 - 34039501
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||          ||||||||||||||    
T  34039341 ataattcttcggtcgcttgctattttggtcttctccattagtattttgcaaaatctattaactcctttccacgtgt----------tcttgatcaacggt 34039430  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttcc 180  Q
    || |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34039431 tggatttaaaaaacacacatgacataccgtagactcacaacatacgataatttttattgtcatcttcttcc 34039501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 15650524 - 15650701
Alignment:
Q  15 tcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaat 114  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  | ||| ||  |||||||  |||  ||    
T  15650524 tcttatgtcgtttactattttggtcatctccgttagtattttgcaaaatttgttaactcctttccacatgtccttcaagattggtgatcaatagttagat 15650623  T
Q  115 ttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    ||||||  || |||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  15650624 ttaaaactcatacatagcatactgtggactcacaacatatgataatttttattgtcatcttcttccctcttcatcttc 15650701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 42027287 - 42027428
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||| |||    
T  42027287 ttactactttggtcctttccgttagtattttgcaaaatctgttaactcttttccacatgtcagttaagattcttgatcaacggttggatttaaaaagcac 42027386  T
Q  126 acatggcataccgtggactcacaacatacgataatttttatt 167  Q
    ||||| ||||  |||||||| ||||||| ||| ||| |||||    
T  42027387 acatgacataatgtggactcccaacatatgatcattcttatt 42027428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 2581952 - 2582034
Alignment:
Q  101 atcaacggttgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctc 183  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  2581952 atcaacggttggatttaaaaagcacacatgggataccgtggactcacaacatatgataaattctattgtcatcttcttccctc 2582034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 42028577 - 42028500
Alignment:
Q  159 atttttattgtcatcttcttccctcttcttcttccaacctcatatccaaaacaaaaaacaatagttcagcaactttct 236  Q
    |||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||| |||||||||    
T  42028577 atttttattgtcatcttcttccctcttcatcatccaacttcatacccaaaacaaaaaacaatagttcaacaactttct 42028500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 34039493 - 34039539
Alignment:
Q  185 tcttcttccaacctcatatccaaaacaaaaaacaatagttcagcaac 231  Q
    |||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  34039493 tcttcttccaacttcatacccaaaacaaaaaacaatagttcaacaac 34039539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 2581897 - 2581936
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatct 65  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  2581897 ttactatcttggtcctctccgttagtattttgcaaaatct 2581936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 10477447 - 10477546
Alignment:
Q  37 gtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacacacatggcatac 136  Q
    ||||||| ||||| | ||||||||||| ||||||   |||||||| | ||| ||| | ||  ||||||| || |||||||||||||||||||||| ||||    
T  10477447 gtcatcttcgttaattttttgcaaaatatgttaaacactttccacatatcatttaggatttgtgatcaatggctgaatttaaaaaacacacatggtatac 10477546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 40174802 - 40174756
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtatttt 56  Q
    |||| |||||||| | |||||||||||||||||||||||||| ||||    
T  40174802 ataaatcttctgttgtttactattttggtcatctccgttagtttttt 40174756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 12852964 - 12853004
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttag 50  Q
    |||| |||||| ||| |||||||||||||||||||||||||    
T  12852964 ataaatcttctatcgtttactattttggtcatctccgttag 12853004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 21012113 - 21012077
Alignment:
Q  15 tcttctgtcgcttactattttggtcatctccgttagt 51  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  21012113 tcttccgtcgtttactattttggtcatctccgttagt 21012077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 8412338 - 8412180
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||| |||||||||||| || |||    
T  8412338 ttactattttggtcctctccgttagtattttgcaaaatctgttaactcctttccacatgtcatttaagattcgtgatcaatggttgaatttaagaagcac 8412239  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctct 184  Q
    |||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||||    
T  8412238 acatagcataccgtagactcacaacatacgataacttctattgtcatcttcttccctct 8412180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 8411180 - 8411346
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||| ||  ||||||||||||| |||||| || ||     
T  8411180 ttactattttggtcctctccgttaatattttgcaaaatttgttaactcctttccacatgtcatttaagatttgtgatcaacggttggatttaagaagcat 8411279  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    ||||| ||||| ||| ||||||||||||| |||| || ||||||||||||||||||| ||| |||||    
T  8411280 acatgacatacggtgtactcacaacatactataacttctattgtcatcttcttcccttttcatcttc 8411346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2127 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold2127
Description:

Target: scaffold2127; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 537 - 378
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| ||  |||| |||||||| ||||| ||| |||    
T  537 ttactattttggtcctctccgttagtattttgaaaaatctgttaacttctttccatgtgtcacttaagattgatgatgaacggttggatttataaagcac 438  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctctt 185  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  437 acatggcataccgtggactcacaacatatgataacttttattgtcatcttcttccctctt 378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 47136709 - 47136550
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| ||  |||| |||||||| ||||| ||| |||    
T  47136709 ttactattttggtcctctccgttagtattttgaaaaatctgttaacttctttccatgtgtcacttaagattgatgatgaacggttggatttataaagcac 47136610  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctctt 185  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  47136609 acatggcataccgtggactcacaacatatgataacttttattgtcatcttcttccctctt 47136550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 16217534 - 16217684
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||   |||||||||||  ||||||||| |||    
T  16217534 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcatttccacgtgtcatttaagattggcgatcaacggttagatttaaaaagcac 16217633  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttc 176  Q
    ||||||||||||||||||||||||| ||| |||| || |||||||||||||    
T  16217634 acatggcataccgtggactcacaacgtaccataacttctattgtcatcttc 16217684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 3978122 - 3978271
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    ||||||||||||||| |||||||||||||| |||||||||  | |||||||||||||||||||| |||| || ||||||||||| ||||||||||| |||    
T  3978122 ataattcttctgtcgtttactattttggtcctctccgttaaaaatttgcaaaatctgttaactcatttctacatgtcagttaagattcttgatcaatggt 3978221  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataa 159  Q
    || |||||||||  ||||||| |||||||||||||||||||||| |||||    
T  3978222 tggatttaaaaagaacacatgccataccgtggactcacaacatatgataa 3978271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 16218516 - 16218357
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||  ||||| ||||  ||  |||||||||||    
T  16218516 ataaatcttatgtcgtttaatattttggtcatctccgttagtattttgcaaaatctattaactcatttccatatgtcatttaaaattggtgatcaacggt 16218417  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgt 169  Q
    |||||||||||| ||||| || |||||||| ||||||||||||| ||||||| |||||||    
T  16218416 tgaatttaaaaagcacacgtgacataccgtagactcacaacatatgataattcttattgt 16218357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 26 - 176
Target Start/End: Complemental strand, 47411470 - 47411320
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||||| || |||| ||||| ||||| ||  ||||||||||||||||||||||| |||    
T  47411470 ttactattttgattctctccgttagtattttgcaaaatctgttaactctttgccacatgtcatttaagattggtgatcaacggttgaatttaaaaagcac 47411371  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttc 176  Q
    ||||| |||| ||||||||||||| ||||||||| ||| ||  ||||||||    
T  47411370 acatgacatatcgtggactcacaagatacgataactttcatcttcatcttc 47411320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 3979351 - 3979192
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttc-ttgatcaacgg 108  Q
    |||||||||||| || |||||||||||||| |||||||||| | |||||||||||| |||| || ||||||| ||||| ||||| ||| |||||||||||    
T  3979351 ataattcttctgccgtttactattttggtcctctccgttaggaatttgcaaaatctattaattcatttccacatgtcacttaagattctttgatcaacgg 3979252  T
Q  109 ttgaatttaaaaaacacacatggcataccgtggactcac-aacatacgataatttttatt 167  Q
    ||| |||||||||  ||||||| |||||||||||||||| |||||| ||||||| |||||    
T  3979251 ttggatttaaaaagaacacatgccataccgtggactcacaaacatatgataattcttatt 3979192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 52181327 - 52181200
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||  ||| ||||| ||||| ||  ||||||||||||| ||||||||| |||    
T  52181327 ttactattttggtcatctccgttaatattttgcaaaatctgttaactctttgtcacatgtcatttaagattggtgatcaacggttggatttaaaaagcac 52181228  T
Q  126 acatggcataccgtggactcacaacata 153  Q
    ||||| ||||||||| ||||||||||||    
T  52181227 acatgacataccgtgaactcacaacata 52181200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 25786046 - 25786189
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||| ||||| ||| |||||||||| |||| |||||||||||||||||| ||||||||| ||  ||||||||| ||||| ||  |||||||||||    
T  25786046 ataaatcttatgtcgtttattattttggtcctctctgttagtattttgcaaaatttgttaactctttgtcacgtgtcatttaagattggtgatcaacggt 25786145  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacata 153  Q
    || ||||||||| |||||||| |||||| |||||||||||||||    
T  25786146 tggatttaaaaagcacacatgacataccatggactcacaacata 25786189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 25787186 - 25787019
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| ||  ||||||||| ||||| ||  ||||||||||||| ||||||||| | |    
T  25787186 ttactattttggtcctctccgttagtattttgcaaaatttgttaactctttgtcacgtgtcatttaagattggtgatcaacggttggatttaaaaagccc 25787087  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttcc 193  Q
     ||||  ||||||||||||||||||||| ||||| ||  ||  |||||||||||  ||||| ||||||    
T  25787086 gcatgatataccgtggactcacaacatatgataacttccatgttcatcttcttcaatcttcatcttcc 25787019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 47411062 - 47411210
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||  ||| ||||| ||||| ||  |||||||| ||    
T  47411062 ataaatcttatgtcgtttactattttggtcatctccgttagtattttgcaaaatttgttaactctttgtcacatgtcatttaagattggtgatcaacagt 47411161  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataa 159  Q
    || |||| |||| |||||||| |||| |||||||||| |||||| |||||    
T  47411162 tggattt-aaaagcacacatgacatatcgtggactcataacatatgataa 47411210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 36511369 - 36511328
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagt 51  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  36511369 ataaatcttctgtcgtttactattttggtcatctccgttagt 36511328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 13568456 - 13568357
Alignment:
Q  37 gtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacacacatggcatac 136  Q
    ||||||||||||| | ||||||||||||| ||||   |||||||| ||||| |||   ||  ||||||| |  ||||| |||||||||||||||||||||    
T  13568456 gtcatctccgttaattttttgcaaaatctattaaacactttccacatgtcatttagaatttgtgatcaatgactgaatataaaaaacacacatggcatac 13568357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 48467377 - 48467438
Alignment:
Q  60 aaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaa 121  Q
    |||||||||||||| ||||||| ||||| ||||| ||  |||| | ||||||||||||||||    
T  48467377 aaatctgttaactcttttccacatgtcatttaagattgatgatgagcggttgaatttaaaaa 48467438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 48467448 - 48467488
Alignment:
Q  141 gactcacaacatacgataatttttattgtcatcttcttccc 181  Q
    ||||||||||||| ||||| || ||||||||||||||||||    
T  48467448 gactcacaacatatgataacttatattgtcatcttcttccc 48467488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 22746342 - 22746184
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| | ||| ||||| ||| ||||||| |||||||||||| || |||    
T  22746342 ttactattttgatcctctccgttagtattttgcaaaatttgttaactcctttccacatatcatttaagattcgtgatcaatggttgaatttaagaagcac 22746243  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctct 184  Q
    |||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  22746242 acatagcataccgtggactcacaacatacgataacttctattgtcatcttcttccctct 22746184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 22060557 - 22060724
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||||| ||  ||||||||||||| ||||||||| |||    
T  22060557 ttactattttggtcatctccgttagtattttacaaaatctgttaactcatttccacgagtcatttaagattggtgatcaacggttggatttaaaaagcac 22060656  T
Q  126 acatggcataccgt-ggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    ||||| ||||||||  |||| |||||||| ||||| || ||||||||||||||||| ||||| |||||    
T  22060657 acatgacataccgtatgacttacaacatatgataacttctattgtcatcttcttccttcttcatcttc 22060724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 22061817 - 22061651
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||| ||| |||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||   |||||||||||| ||||||||| |||    
T  22061817 ttactattttagtcttctccgttagtattttgcaaaacctgttaactccttgccacgtgtcatttaagattggggatcaacggttggatttaaaaagcac 22061718  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    ||||| |||| ||||||||| ||||||| ||||| |  ||||||||||||||||||||||| |||||    
T  22061717 acatgacatatcgtggactcgcaacatatgataactcctattgtcatcttcttccctcttcatcttc 22061651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 22744840 - 22745006
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||| ||  ||||||||||||| |||||| || ||     
T  22744840 ttactattttggtcttctccgttaatattttgcaaaatttgttaactcctttccacatgtcatttaagatttgtgatcaacggttggatttaagaagcat 22744939  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    ||||||||||| ||| ||||||||||||| |||| || ||||||||||||||||||| ||| |||||    
T  22744940 acatggcatacggtgtactcacaacatactataacttctattgtcatcttcttcccttttcatcttc 22745006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 19279640 - 19279501
Alignment:
Q  20 tgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaa 119  Q
    ||||| |||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||    
T  19279640 tgtcgtttactattttggtcctttccgttagtattttgcaaaatctgttaactcatttccacgtgtcagttaagattcttgatcaacggttgaattaaaa 19279541  T
Q  120 aaacacacatggcataccgtggactcacaacatacgataa 159  Q
    || |||||||| |||| | | ||||||| ||||| |||||    
T  19279540 aagcacacatgacatatcatagactcactacatatgataa 19279501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 46673583 - 46673749
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||||  ||||||| ||||| ||||| ||  |||||||| |||| ||||| ||| ||     
T  46673583 ttactatgttggtcctctccattagtattttgcaaaatctgttaacttttttccacatgtcacttaagattgatgatcaacagttggatttataaagcat 46673682  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    ||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||    
T  46673683 acatggcatactgtggactcacaacatatgataacttttattatcatcttcttccctcttcatcttc 46673749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 26 - 191
Target Start/End: Original strand, 7146873 - 7147038
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| ||  |||| |||||||| ||||||||| |||    
T  7146873 ttactgttttggtcctctccattagtattttgcaaaatctgttaactcttttccacatgtcatttaagattgatgatgaacggttggatttaaaaagcac 7146972  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttctt 191  Q
    |||| ||||||| || ||| ||||||||  |||| || ||||||||||||||||||||||| ||||    
T  7146973 acatagcataccatgaacttacaacatataataacttctattgtcatcttcttccctcttcatctt 7147038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 35127904 - 35128045
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||| |||    
T  35127904 ttactattttggtcatcttcgttaatattttgcaaaatctgttaactcctttccacgtgtcagttaagatcagtgatcaacggttgaatttaaaaagcac 35128003  T
Q  126 acatggcataccgtggactcacaacatacgataatttttatt 167  Q
    || |  |||| | || || ||||||||| ||||||| |||||    
T  35128004 acgttacatatcctgaacacacaacatatgataattattatt 35128045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 35128229 - 35128073
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||| ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||||||||||    
T  35128229 ataaatcttatgtcgtttactattttggtcctctc-gttagtattttgcaaaatctgttaactcctttccacgtgtcatttaagattggtgatcaacggt 35128131  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttatt 167  Q
    || ||||||||| |||||||  |||||| ||||| | ||||||| ||| ||| |||||    
T  35128130 tggatttaaaaagcacacattacataccctggacgcgcaacatatgatcattattatt 35128073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 7148091 - 7147925
Alignment:
Q  15 tcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaat 114  Q
    |||| ||||| ||||| |||||||  ||||||||||||||||||||||| ||||| ||| ||||||| ||||| ||||| || ||||| |||||||| ||    
T  7148091 tcttatgtcgtttactgttttggttctctccgttagtattttgcaaaatttgttacctcttttccacatgtcatttaagattattgatgaacggttggat 7147992  T
Q  115 ttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctct 184  Q
    ||||||| ||   || ||||||||||||||||||||||| ||||| || ||| |||||||||||||||||    
T  7147991 ttaaaaagca---atagcataccgtggactcacaacatatgataacttctatggtcatcttcttccctct 7147925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 19278431 - 19278570
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||||||||||| || |||||||||||||| ||| |||||| | ||||||||||||||||| || ||||||| ||||||||||  |||||||||||||||    
T  19278431 ataattcttctgccgtttactattttggtcctcttcgttaggaatttgcaaaatctgttaattcatttccacatgtcagttaaaattcttgatcaacggt 19278530  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaa 149  Q
    || |||||||||  ||||||  ||||||||||||||||||    
T  19278531 tggatttaaaaagaacacataccataccgtggactcacaa 19278570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 43007687 - 43007536
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||| ||||| |||||||||| ||  ||||||||||||||||||||||||||||||||| ||||| ||||||| ||||  || |||||||||||     
T  43007687 ataagtcttatgtcgtttactattttagttctctccgttagtattttgcaaaatctgttaactcatttccgcgtgtcatttaaaattgttgatcaacggc 43007588  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatt 161  Q
    || ||||| |||||||||||| |||||| |||||| |||||||  |||||||    
T  43007587 tggatttacaaaacacacatgacataccatggacttacaacatgtgataatt 43007536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 43006482 - 43006629
Alignment:
Q  29 ctattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacacaca 128  Q
    |||||||||||||||||||||||||||| |||||| ||||||||| ||| ||| ||||| ||||| ||  |||||||| ||||||||||| || ||||||    
T  43006482 ctattttggtcatctccgttagtattttacaaaatttgttaactcattttcacatgtcatttaagattggtgatcaacagttgaatttaagaagcacaca 43006581  T
Q  129 tggcataccgtggactcacaacatacgataatttttattgtcatcttc 176  Q
    | |||||||||||||||  |||||| ||||| || ||||  |||||||    
T  43006582 tagcataccgtggactctgaacataggataacttctattaccatcttc 43006629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 48672803 - 48672661
Alignment:
Q  20 tgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaa 119  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||  ||||| ||||| ||   | |||| |||||||||||||    
T  48672803 tgtcgtttactattttagtcctctccgttagtattttgcaaaatctgttaactcctttccaattgtcatttaagattggcgttcaaaggttgaatttaaa 48672704  T
Q  120 aaacacacatggcataccgtggactcacaacatacgataattt 162  Q
    || || |||||  ||| ||||||||||||| ||| ||||||||    
T  48672703 aagcagacatgaaatatcgtggactcacaagatatgataattt 48672661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 46674956 - 46674843
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||  ||| || || ||| ||||| ||  ||||||  ||||| |||||||||||||    
T  46674956 ttactattttggtcctctccgttattattttgcaaaatctgttaactatttttcatgtctcatttaagattggtgatcattggttggatttaaaaaacac 46674857  T
Q  126 acatggcataccgt 139  Q
    |||| | |||||||    
T  46674856 acatagtataccgt 46674843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 48754074 - 48754229
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttag-tattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacgg 108  Q
    |||| |||| ||||| |||| ||||| ||| |||||||||| | |||||||||||| ||||||||||| |||||||||  ||||| ||  ||||||||||    
T  48754074 ataaatcttatgtcgtttaccattttagtcctctccgttagattttttgcaaaatccgttaactcctt-ccacgtgtcccttaagattggtgatcaacgg 48754172  T
Q  109 ttgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttatt 167  Q
     || |||||||||| |    |||||||||||||||| |||||||| |||||||| ||||    
T  48754173 ctggatttaaaaaatagg--tggcataccgtggactgacaacatatgataatttctatt 48754229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 36702981 - 36702911
Alignment:
Q  17 ttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtca 87  Q
    ||||| || |||||||||||||| | ||||||| |||||||||||||||||||||| |||||||| |||||    
T  36702981 ttctgccgtttactattttggtcctttccgttattattttgcaaaatctgttaacttctttccacatgtca 36702911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 48671171 - 48671343
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaattt------aaa 119  Q
    ||||||||| |||  ||||||| ||||||||| ||||| |||| |||||||||||| ||||| ||||| ||  |||||||| |||  ||||      |||    
T  48671171 ttactatttcggttctctccgtcagtattttgaaaaatttgtttactcctttccacttgtcatttaagattggtgatcaacagttagatttaaaaaaaaa 48671270  T
Q  120 aaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    ||| ||||||| |||| ||| |||||||||  || ||||| || |||| || ||||||||||||||| |||||    
T  48671271 aaaaacacatgacatatcgtagactcacaatgtatgataacttctattatcgtcttcttccctcttcatcttc 48671343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 1970976 - 1971092
Alignment:
Q  100 gatcaacggttgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttccaacctc 199  Q
    |||||| ||||||||||||||| |||||||| |||||| || ||| | ||| || ||||| || |||  |||||| ||| ||||||| ||||||||| ||    
T  1970976 gatcaatggttgaatttaaaaagcacacatgacataccatgaactaataacttatgataaattctataatcatctcctttcctcttcatcttccaacttc 1971075  T
Q  200 atatccaaaacaaaaaa 216  Q
    ||| | |||||||||||    
T  1971076 atacctaaaacaaaaaa 1971092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 43936178 - 43936132
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtatttt 56  Q
    ||||||||||||||| |||||||||||||| ||||||||||| ||||    
T  43936178 ataattcttctgtcgtttactattttggtcctctccgttagtttttt 43936132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 7347258 - 7347101
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttag--tattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacg 107  Q
    |||| |||| ||||| |||| |||||  || ||||||||||  | ||||||||||||  ||| |||||| ||||||||   ||||| ||  |||||||||    
T  7347258 ataaatcttatgtcgtttaccattttaatcctctccgttagatttttttgcaaaatccattagctccttgccacgtgttttttaagattggtgatcaacg 7347159  T
Q  108 gttgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttatt 167  Q
    |||| |||| ||||  |    ||||||||||||||||||||||||| |||||||| ||||    
T  7347158 gttggatttgaaaattagg--tggcataccgtggactcacaacatatgataatttctatt 7347101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 14206751 - 14206797
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtatttt 56  Q
    |||| |||||||||| ||||||||||| |||||||||||||| ||||    
T  14206751 ataaatcttctgtcgtttactattttgctcatctccgttagtttttt 14206797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 14215441 - 14215487
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtatttt 56  Q
    |||| |||||||||| ||||||||||| |||||||||||||| ||||    
T  14215441 ataaatcttctgtcgtttactattttgctcatctccgttagtttttt 14215487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 31623984 - 31624166
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||| ||||| ||| |||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||  |||||||||||    
T  31623984 ataaatcttatgtcgtttattattttagtcctctccgttactatgttgcaaaatctgttaactcctttccacgtgtcacttaagattgatgatcaacggt 31624083  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    || ||| | ||| |||||||||||||| || |||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  31624084 tggattaataaagcacacatggcatactgtagacttacaacatatgataatttttattgtcatcttcttccctcttcatcttc 31624166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 27750643 - 27750510
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| |||||||||||||||||||||||||||||| || ||| ||||||||||||||| ||  ||||||||||||| ||||||||| |||    
T  27750643 ttactattttggtcttctccgttagtattttgcaaaatctgttaattcattttcacgtgtcagttaagattggtgatcaacggttggatttaaaaagcac 27750544  T
Q  126 acatggcataccgtggactcacaacatacgataa 159  Q
    ||||| |||||||||||||||||||||| |||||    
T  27750543 acatgacataccgtggactcacaacatatgataa 27750510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 38589898 - 38590047
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||| ||||| ||||||||||| |||||| |||| |||||||||||||||||||||||| ||  ||||||||| ||||| ||  |||||||||||    
T  38589898 ataaatcttatgtcgtttactattttgatcatcttcgtttgtattttgcaaaatctgttaactctttgtcacgtgtcatttaagattggtgatcaacggt 38589997  T
Q  110 tgaatttaaaaaacacacatggcataccgtggactcacaacatacgataa 159  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  38589998 tgaatttaaaaagcacacatggcataccgtggactcacaacatatgataa 38590047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 192
Target Start/End: Complemental strand, 41867934 - 41867771
Alignment:
Q  30 tattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaattt-aaaaaacacaca 128  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||  ||||||||||||| |||| ||||||||||||    
T  41867934 tattttagtcctctccgttagtattttgcaaaatttgttaactcttttccacatgtcagttaagattagtgatcaacggttggatttaaaaaaacacaca 41867835  T
Q  129 tggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    | |||||| ||||| |||||||||| ||||| || ||| ||||||||||||||||||| |||||    
T  41867834 ttgcatacagtggattcacaacataggataacttctatggtcatcttcttccctcttcgtcttc 41867771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 3237502 - 3237661
Alignment:
Q  17 ttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaattt 116  Q
    ||||| || |||| |||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||  |||||||| |||| ||||    
T  3237502 ttctgccgtttacaattttgatcatttccgttagtattttgcaaaatctgttaactcatttccacgtgtcagttaagattggtgatcaacagttggattt 3237601  T
Q  117 aaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttc 176  Q
    ||||| |||||||| || || | |||||||||||||| |||||  | |||||||||||||    
T  3237602 aaaaagcacacatgacaaacaggggactcacaacatatgataaaatctattgtcatcttc 3237661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 43275848 - 43276010
Alignment:
Q  30 tattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacacacat 129  Q
    |||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||| ||||  ||  ||||||||||||  |||||| || |||||||    
T  43275848 tattttggtcctcaccgttagtattttgaaaaatctgttaactcatttccacgtgtcatttaaaattggtgatcaacggttagatttaagaagcacacat 43275947  T
Q  130 ggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    | |||||| |||||||||||||||  |||| || |||||||||||||||||||| || |||||    
T  43275948 gacataccatggactcacaacatattataacttctattgtcatcttcttccctcctcatcttc 43276010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 43277943 - 43277816
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||||| ||||| ||||||||| | ||||||||||||| |||||| || ||| ||||| ||  ||||||||||||||||||||||| |||    
T  43277943 ttactattttggtcatgtccgtcagtattttgtagaatctgttaactcatttccatgtttcatttaagattgatgatcaacggttgaatttaaaaagcac 43277844  T
Q  126 acatggcataccgtggactcacaacata 153  Q
    |||||||||||||||| |||| ||||||    
T  43277843 acatggcataccgtgggctcagaacata 43277816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 1570228 - 1570118
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  | ||| ||  |||||||||||| |||||||||| ||     
T  1570228 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacatgtccttcaagattgatgatcaacggttaaatttaaaaagcat 1570129  T
Q  126 acatggcatac 136  Q
    |||| ||||||    
T  1570128 acattgcatac 1570118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 4807464 - 4807593
Alignment:
Q  30 tattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacacacat 129  Q
    |||||||||  ||||||||| ||||||||||||||| ||||||| ||||||| ||||| || || ||  ||||||||||||| ||||||||  |||||||    
T  4807464 tattttggttctctccgttactattttgcaaaatctattaactcatttccacatgtcatttgagattggtgatcaacggttggatttaaaaggcacacat 4807563  T
Q  130 ggcataccgtggactcacaacatacgataa 159  Q
    | |||||||||||||||||| ||| |||||    
T  4807564 gtcataccgtggactcacaatatatgataa 4807593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 38591029 - 38590867
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| |||||     ||||||||||||||||||||||| ||  ||||||||| ||||| ||  |||||||| |||||||||||||| | |    
T  38591029 ttactattttggtcctctcc-----tattttgcaaaatctgttaactctttgtcacgtgtcatttaagattggtgatcaacagttgaatttaaaaagccc 38590935  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttcc 193  Q
     ||||  |||||||||||| || ||||| ||||||||  ||  |||||||||||| ||||| ||||||    
T  38590934 gcatgatataccgtggacttacgacatatgataatttccatgttcatcttcttccatcttcatcttcc 38590867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 41866988 - 41867047
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgt 85  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41866988 ttactattttggtcatctctgttagtattttgcaaaatctgttaactcctttccacgtgt 41867047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 31625406 - 31625273
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||  |||||| |||||| ||||  ||  |||||||| |||| |||| ||||||||    
T  31625406 ttactattttggtcctctccgttattattttgcaaaatctgttaactattttccatgtgtcatttaaaattgatgatcaacagttggatttgaaaaacac 31625307  T
Q  126 acatggcataccgtggactcacaacatacgataa 159  Q
    ||| || ||||| | |||| || ||||| |||||    
T  31625306 acacggtataccatagacttacgacatatgataa 31625273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 45385832 - 45385677
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttag-tattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacgg 108  Q
    |||| |||| ||||| |||| ||||| ||| |||||||||| | |||||||||||| ||||||||||| |||||||||  ||||| ||  |||||||||     
T  45385832 ataaatcttatgtcgtttaccattttagtcctctccgttagattttttgcaaaatccgttaactcctt-ccacgtgtcccttaagattgatgatcaacga 45385734  T
Q  109 ttgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttatt 167  Q
     ||||||||||||| |    |||||||||||||||| |||||||| |||||||| ||||    
T  45385733 ctgaatttaaaaaatagg--tggcataccgtggactgacaacatatgataatttctatt 45385677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 14821992 - 14822085
Alignment:
Q  99 tgatcaacggttgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    |||| |||||||| ||||||||| | ||||||| ||  |||| ||||| || ||| ||||| || ||||||||||||||||||||||| |||||    
T  14821992 tgattaacggttggatttaaaaagcgcacatgggatgtcgtgcactcaaaatatatgataacttctattgtcatcttcttccctcttcatcttc 14822085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 14820678 - 14820741
Alignment:
Q  30 tattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaag 93  Q
    |||||||||| ||||  |||||||||| || ||| ||||||||| ||||||||||||| |||||    
T  14820678 tattttggtcctctctcttagtattttacataatttgttaactcatttccacgtgtcatttaag 14820741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 41867046 - 41867124
Alignment:
Q  108 gttgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttc 186  Q
    |||||||||||||| || ||| |||||||| |||||| | ||| || ||||| || |||  ||||||||||||||||||    
T  41867046 gttgaatttaaaaagcatacacggcataccatggactaataacttatgataaattctataatcatcttcttccctcttc 41867124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 36756142 - 36756183
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagt 51  Q
    |||| |||| ||||| ||||||||||||||||||||||||||    
T  36756142 ataaatcttatgtcgtttactattttggtcatctccgttagt 36756183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 26404232 - 26404072
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| || |||||| |||||| |||||||| ||||||| ||||||||||||| ||||| ||  ||||||||| ||| |||||||||| ||    
T  26404232 ttactattttggtcctcaccgttattattttacaaaatctattaactcatttccacgtgtcatttaagattgatgatcaacgtttggatttaaaaaatac 26404133  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttc 186  Q
    ||||||||||||||||||||| |||| | ||||||||  ||||||||||||||||||||||    
T  26404132 acatggcataccgtggactcataacacatgataatttccattgtcatcttcttccctcttc 26404072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 10085867 - 10085726
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||||  ||| ||||||||| |||    
T  10085867 ttactattttggtcctctccgttagtattttgcaaaatctgttaactcttttccacgtgtcagttaagattgatgatcaacaattggatttaaaaagcac 10085768  T
Q  126 acatggcataccgtggactcacaacatacgataatttttatt 167  Q
    ||  | ||||||||| | |||||||||| ||||||| |||||    
T  10085767 acgcgacataccgtgaattcacaacatatgataattattatt 10085726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 10084676 - 10084813
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggt 109  Q
    |||| |||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||  |||||||||||    
T  10084676 ataaatcttttgtcgtttactattttggtcctctccgttaatattttgcaaaatctgttaactccttttcacgtgtcagttaagattggtgatcaacggt 10084775  T
Q  110 t-gaatttaaaaaacacacatggcataccgtggactca 146  Q
    | || || ||||| ||| ||| ||||||||||||||||    
T  10084776 tagacttaaaaaagcacgcatagcataccgtggactca 10084813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 26403395 - 26403528
Alignment:
Q  20 tgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaa 119  Q
    ||||| |||||||||||||| |||| |||| ||| ||||||||||||||||||| ||||||| ||||| ||||  ||  ||||||| |||||||||||||    
T  26403395 tgtcgtttactattttggtcttctctgttaatatattgcaaaatctgttaactcttttccacatgtcatttaaaattgatgatcaatggttgaatttaaa 26403494  T
Q  120 aaacacacatggcataccgtggactcacaacata 153  Q
    ||||||||||| ||||||||||||| ||||||||    
T  26403495 aaacacacatgacataccgtggacttacaacata 26403528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 1663265 - 1663418
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtattttgcaaaa-tctgttaactcctttccacgtgtcagttaaggttcttgatcaacgg 108  Q
    |||| ||||||| || |||||||||||||| ||||||||| ||| |||||||| | ||||||||||||||||||||| ||||||| |   ||||||||||    
T  1663265 ataaatcttctgccgtttactattttggtcttctccgttaatatattgcaaaaatatgttaactcctttccacgtgttagttaagatcggtgatcaacgg 1663364  T
Q  109 ttgaatttaaaaaacacaca-tggcataccgtggactcacaacatacgataatt 161  Q
    ||| ||||||||| |||||| ||||||| |||||||||| |||||| |||||||    
T  1663365 ttggatttaaaaagcacacactggcatatcgtggactcagaacatatgataatt 1663418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 8762428 - 8762280
Alignment:
Q  20 tgtcgcttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaa 119  Q
    ||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||   ||||||| |||| |||||||    
T  8762428 tgtcgtttactattttagtcctctccgttaatattttgcaaaatctgttaactcttttccacgtgtcatttaagattgacgatcaacagttggatttaaa 8762329  T
Q  120 aaa-cacacatggcataccgtggactcacaacatacgataatttttatt 167  Q
    ||| |||||||  || ||| ||||| |||||||||  |||||| |||||    
T  8762328 aaagcacacattacaaaccctggacgcacaacatataataattattatt 8762280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 27894024 - 27893911
Alignment:
Q  46 gttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacacacatggcataccgtggactc 145  Q
    |||||||||||||||||| |||||||||  |||||||| ||||||||| ||||||||||||| ||| ||||||||| || |||||  ||||| | |||||    
T  27894024 gttagtattttgcaaaatttgttaactcaattccacgtatcagttaagattcttgatcaacgattggatttaaaaagcatacatgagataccatagactc 27893925  T
Q  146 acaacatacgataa 159  Q
    |||||||| |||||    
T  27893924 acaacatatgataa 27893911  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 19569573 - 19569482
Alignment:
Q  101 atcaacggttgaatttaaaaaacacacatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttc 192  Q
    ||||||||||| |||||||||  |||||||||||||||||||||||||||||| ||||| ||  ||  |||||||||||| ||||| |||||    
T  19569573 atcaacggttggatttaaaaagaacacatggcataccgtggactcacaacatatgataacttccatcttcatcttcttccatcttcatcttc 19569482  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 5062193 - 5062098
Alignment:
Q  41 tctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacacacatggcatac 136  Q
    ||||||||| | ||||||||||||||||||   |||||||| ||||| ||| | ||  ||||||| || || ||||||||||||||||||| ||||    
T  5062193 tctccgttaattttttgcaaaatctgttaaacactttccacatgtcatttaggatttgtgatcaatggctggatttaaaaaacacacatggtatac 5062098  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 22819555 - 22819514
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagt 51  Q
    |||| ||||||| || ||||||||||||||||||||||||||    
T  22819555 ataactcttctgccgtttactattttggtcatctccgttagt 22819514  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 32734209 - 32734250
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagt 51  Q
    |||| |||||||||| |||||||||||||||| |||||||||    
T  32734209 ataactcttctgtcgtttactattttggtcatttccgttagt 32734250  T

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Target: scaffold0369 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 13031 - 13174
Alignment:
Q  59 aaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacacacatggcataccgtggactcacaacatacgata 158  Q
    ||||||| ||||||| ||||||| ||||||||||  ||  |||||||||||||||||||| || || ||||||||||| ||||||||| |||| | ||||    
T  13031 aaaatctattaactcttttccacatgtcagttaaaattggtgatcaacggttgaatttaagaagcagacatggcatactgtggactcaaaacaaatgata 13130  T
Q  159 atttttattgtcatcttcttccctcttcttcttccaacctcata 202  Q
    | || ||||||||| | | ||||||||| |||| |||| |||||    
T  13131 acttctattgtcatttccatccctcttcatctttcaacttcata 13174  T

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Target: scaffold0007 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 145891 - 145726
Alignment:
Q  26 ttactattttggtcatctccgttagtattttgcaaaatctgttaactcctttccacgtgtcagttaaggttcttgatcaacggttgaatttaaaaaacac 125  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||||||  || |||| ||||  ||||  ||  |||||||| |||| ||||||||||  |    
T  145891 ttactattttggtcatctccgttaatattttgtaaaatttgttaact--ttgccacatgtcttttaatattggtgatcaacagttggatttaaaaaaacc 145794  T
Q  126 acatggcataccgtggactcacaacatacgataatttttattgtcatcttcttccctcttcttcttcc 193  Q
    |||||  ||||  ||||||||||||||| ||||| ||  ||  |||| ||||||| ||||| ||||||    
T  145793 acatgatatacaatggactcacaacatatgataacttccatgttcatattcttccatcttcatcttcc 145726  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 22205 - 22244
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgtta 49  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  22205 ataaatcttctgtcgtttactattttggtcatctccgtta 22244  T

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Target: scaffold0098 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 42384 - 42338
Alignment:
Q  10 ataattcttctgtcgcttactattttggtcatctccgttagtatttt 56  Q
    |||| |||||||||| |||||||||||||| |||| |||||||||||    
T  42384 ataaatcttctgtcgtttactattttggtcctctctgttagtatttt 42338  T

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