View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13215_low_3 (Length: 694)
Name: NF13215_low_3
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13215_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 56 - 679
Target Start/End: Complemental strand, 31088459 - 31087815
Alignment:
| Q |
56 |
ctagttctgaatggttcttcaattgggaaaaaagagagaacgtggattagcatctcgaaagtcgttgatgagcttttttgtactctaaaattattgcaac |
155 |
Q |
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| T |
31088459 |
ctagttctgaatgcttcttcaattgggagaaaagagagaacgtggattaatatctcggaagtcgttgatgagcttttttgtactgtaaaattattgcaac |
31088360 |
T |
|
| Q |
156 |
ttttgtacgaagctttcgattcccgtttgtttgaagcttgcggtgggagaagttgtcgagagtttctactgtcggtggagaatatgccggtggagtttgt |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31088359 |
ttttgtacgaagctttcgattcccgtttgtttgaagcttgcggtgggagaagttgtcgagagtttctactgtcggtggagaatatgccggtggagtttgt |
31088260 |
T |
|
| Q |
256 |
ttgaactgaaggaagtacatggaagaa-gaatgatagaactatgcgaaatgcctcgaaaaatttcctgaaccggaggaaacctaataagaagaccttg-- |
352 |
Q |
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| T |
31088259 |
ttgaactgaaggaagtgcatggaagaaagaatgatagagctatgcgaaatgcctcgaaaaatttcctgaaccggaggaaacctaataagaagaccttgtt |
31088160 |
T |
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| Q |
353 |
-----------------ccaataactaatctatctatattgttgtatttattaattcaacccctcaaattgtgttgacgacacatcatctctctatgtgc |
435 |
Q |
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| T |
31088159 |
tcttttggaagaccttgctaataactaatctatctatattgttgtatttattaattcaacccctcaaattgtgttgacgacacatcatctctctatgtgc |
31088060 |
T |
|
| Q |
436 |
gacgtcataaatattatgatgttgcacctctaagagaactctaccattcttctatgtcaacacattattgcattcaatattattgactactattgtgttt |
535 |
Q |
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| T |
31088059 |
gacgtcataaatattatgatgttgcacctctaagagaactctaccattcttctatgtcaacacattattgcattcaatattattgactactattgtgttt |
31087960 |
T |
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| Q |
536 |
tttaaatcgatcaatatgtgtgcatgttaactcatattttccttttcatcatgttgattcatctt-gtaaatatgtgcagcacaatgcaaattgcataga |
634 |
Q |
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| T |
31087959 |
tttaaatcgatcaatatgtgtgcatgttaactcatattttccttttcatcatgttgattcatcttcgtaaatatgtgcagcacaatgcaaattgcataga |
31087860 |
T |
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| Q |
635 |
aggggaagagaaatttgcgtagacagtagtaatggataagattat |
679 |
Q |
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| T |
31087859 |
aggggaagagaaatttgcatagacagtcgtaatggataagattat |
31087815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 302
Target Start/End: Complemental strand, 31114400 - 31114277
Alignment:
| Q |
175 |
ttcccgtttgtttgaagcttgcggtgggagaagttgtcgagagtttctactgtcggtggagaatatgccggtggagtttgtttgaactgaaggaagtaca |
274 |
Q |
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|||| ||||||||||||||| ||||||||||||||| |||||| ||||||||| | || | | || | |||| ||||||||||||| |||||| |
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| T |
31114400 |
ttcctgtttgtttgaagctttgggtgggagaagttgttgagagtatctactgtcagcggccactgtgtcagtggcgtttgtttgaacttgaggaag---- |
31114305 |
T |
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| Q |
275 |
tggaagaagaatgatagaactatgcgaa |
302 |
Q |
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| T |
31114304 |
tggaagaagaatgatagagctttgcgaa |
31114277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 533 - 679
Target Start/End: Original strand, 9350728 - 9350877
Alignment:
| Q |
533 |
ttttttaaatcgatcaatatgtgtgcatgttaactcatattttccttttcatcatgttgattcatc-ttgtaaatatgtgcagcac-aatgcaaattgca |
630 |
Q |
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||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||||||||| | | ||||||||||| |
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| T |
9350728 |
tttttaaaatcgagcaatatgtgtgcatgttgactcatattttccttttcatcttgttgactcatctttgtaaatatgtgcagctctattgcaaattgca |
9350827 |
T |
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| Q |
631 |
tagaagggg-aagagaaatttgcgtagacagtagtaatggataagattat |
679 |
Q |
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| T |
9350828 |
tagaaggggaaagagaaatttgtgtagactgtagtaattgatacgattat |
9350877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 546 - 672
Target Start/End: Original strand, 9331070 - 9331200
Alignment:
| Q |
546 |
tcaatatgtgtgcatgttaactcatattttccttttcatcatgttgattcatc-ttgt-aaatatgtgcagcac-aatgcaaattgcatagaagggg-aa |
641 |
Q |
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|||||||||||||||||| |||||| |||| ||||||||| |||||| ||||| |||| ||||||||||||| | | ||| |||||||||||||||| || |
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| T |
9331070 |
tcaatatgtgtgcatgttgactcatcttttacttttcatcttgttgactcatctttgtaaaatatgtgcagctctattgcgaattgcatagaaggggaaa |
9331169 |
T |
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| Q |
642 |
gagaaatttgcgtagacagtagtaatggata |
672 |
Q |
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| T |
9331170 |
gagaaatttgtgtagactgtagtaattgata |
9331200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 385 - 527
Target Start/End: Original strand, 27463856 - 27463997
Alignment:
| Q |
385 |
attaattcaacccctcaaattgtgttgacgacacatcatctctctatgtgcgacgtcataaatattatgatgttgcacctctaagagaactctaccattc |
484 |
Q |
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|||||||||||| | ||||||| |||||||||| |||| ||||| ||||| ||||| |||||||| |||||| ||||||||||| ||||| | ||||| |
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| T |
27463856 |
attaattcaaccacccaaattgcgttgacgacatatcaactctccatgtgtcacgtcgtaaatattctgatgtgacacctctaagaaaactcca-cattc |
27463954 |
T |
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| Q |
485 |
ttctatgtcaacacattattgcattcaatattattgactacta |
527 |
Q |
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|||||||| ||| |||| ||||| ||||| |||| ||||||| |
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| T |
27463955 |
ttctatgtgaacgcatttatgcatccaatagtattcactacta |
27463997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 533 - 667
Target Start/End: Original strand, 42939422 - 42939559
Alignment:
| Q |
533 |
ttttttaaatcgatcaatatgtgtgcatgttaactcatattttccttttcatcatgttgattcatc-ttgtaaatatgtgcagcac-aatgcaaattgca |
630 |
Q |
| |
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||||| |||||||| ||| |||||||||||| |||||||||||| | |||||||| |||| ||||| |||| ||||||||| | | | |||| |||||| |
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| T |
42939422 |
tttttaaaatcgattaatttgtgtgcatgttgactcatattttcttgttcatcatattgactcatctttgtcgatatgtgcaactctattgcatattgca |
42939521 |
T |
|
| Q |
631 |
tagaagggg-aagagaaatttgcgtagacagtagtaat |
667 |
Q |
| |
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| T |
42939522 |
tagaaggggaaagagaaatttgcttagacggtagtaat |
42939559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 439 - 529
Target Start/End: Original strand, 42938740 - 42938830
Alignment:
| Q |
439 |
gtcataaatattatgatgttgcacctctaagagaactctaccattcttctatgtcaacacattattgcattcaatattattgactactatt |
529 |
Q |
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| T |
42938740 |
gtcataaatattctaatgtgacacctttaagaggactctcccattctcttatgtgaacacatttttgcattcaatattattcactactatt |
42938830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 527
Target Start/End: Original strand, 30161812 - 30161880
Alignment:
| Q |
459 |
gcacctctaagagaactctaccattcttctatgtcaacacattattgcattcaatattattgactacta |
527 |
Q |
| |
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|||||||||||| ||||| |||||||| |||||||||||||| ||||| ||||||| || ||||||| |
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| T |
30161812 |
gcacctctaagaagactctcccattcttttatgtcaacacatttatgcatccaatattttttactacta |
30161880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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