View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13215_low_8 (Length: 480)

Name: NF13215_low_8
Description: NF13215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13215_low_8
NF13215_low_8
[»] chr7 (3 HSPs)
chr7 (4-131)||(27100521-27100648)
chr7 (4-131)||(27177655-27177782)
chr7 (12-119)||(1877375-1877482)
[»] chr3 (3 HSPs)
chr3 (1-135)||(21522303-21522437)
chr3 (56-134)||(37501990-37502070)
chr3 (56-137)||(3443973-3444056)
[»] chr8 (1 HSPs)
chr8 (1-134)||(32827078-32827212)
[»] chr4 (2 HSPs)
chr4 (332-399)||(39299865-39299931)
chr4 (146-234)||(39299936-39300026)
[»] chr5 (1 HSPs)
chr5 (330-465)||(26879729-26879882)
[»] chr1 (3 HSPs)
chr1 (56-136)||(24908128-24908210)
chr1 (59-135)||(24908209-24908287)
chr1 (65-134)||(18553818-18553888)
[»] chr2 (1 HSPs)
chr2 (58-130)||(10215294-10215366)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 27100648 - 27100521
Alignment:
Q  4 ttttagtatttagtttgttgttgtaattatgctgacaatattgcaagccttataatagagcaaattgggtgtagtttgtgctggtcgtacaaatttgtgg 103  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  27100648 ttttagtatttaggttgttgttgtaattatgctgacagtattgcaagccttataatagaacaaattgggtgtagtttgtgctggtcgtataaattcgtgg 27100549  T
Q  104 ggaaagagcgtcgtgctaaatagcaccg 131  Q
    ||||||||||||||||||||||||||||    
T  27100548 ggaaagagcgtcgtgctaaatagcaccg 27100521  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 27177655 - 27177782
Alignment:
Q  4 ttttagtatttagtttgttgttgtaattatgctgacaatattgcaagccttataatagagcaaattgggtgtagtttgtgctggtcgtacaaatttgtgg 103  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  27177655 ttttagtatttaggttgttgttgtaattatgctgacagtattgcaagccttataatagaacaaattgggtgtagtttgtgctggtcgtataaattcgtgg 27177754  T
Q  104 ggaaagagcgtcgtgctaaatagcaccg 131  Q
    ||||||||||||||||||||||||||||    
T  27177755 ggaaagagcgtcgtgctaaatagcaccg 27177782  T

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Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 1877482 - 1877375
Alignment:
Q  12 tttagtttgttgttgtaattatgctgacaatattgcaagccttataatagagcaaattgggtgtagtttgtgctggtcgtacaaatttgtggggaaagag 111  Q
    |||||||||||||| || ||||||||||| |  ||||||||| | || ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1877482 tttagtttgttgttttatttatgctgacagttatgcaagcctaaaaaaagagcaaattgggtgtagtttgtgctggtcgtacaaattcgtggggaaagag 1877383  T
Q  112 cgtcgtgc 119  Q
    ||||||||    
T  1877382 cgtcgtgc 1877375  T

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Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 21522437 - 21522303
Alignment:
Q  1 ttgttttagtatttagtttgttgttgtaattatgctgacaatattgcaagccttataatagagcaaattgggtgtagtttgtgctggtcgtacaaatttg 100  Q
    |||||||||  |||||||| |||||||| ||||||||||| |  ||||| ||| | || |||||||||| |||||||||||||||||||||||||||| |    
T  21522437 ttgttttagcgtttagttttttgttgtatttatgctgacagttatgcaaacctaaaaaaagagcaaattaggtgtagtttgtgctggtcgtacaaattcg 21522338  T
Q  101 tggggaaagagcgtcgtgctaaatagcaccgctct 135  Q
    ||||||||||||||||||| |||||||||||||||    
T  21522337 tggggaaagagcgtcgtgccaaatagcaccgctct 21522303  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 37501990 - 37502070
Alignment:
Q  56 taatagagcaaattgggtgtag--tttgtgctggtcgtacaaatttgtggggaaagagcgtcgtgctaaatagcaccgctc 134  Q
    |||||||| |||||| ||||||  ||| |||| ||||| || ||| |||||||||||||||||||||| ||||||||||||    
T  37501990 taatagagaaaattgtgtgtagattttttgctagtcgtgcagattcgtggggaaagagcgtcgtgctatatagcaccgctc 37502070  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 3443973 - 3444056
Alignment:
Q  56 taatagagcaaattgggtgtag--tttgtgctggtcgtacaaatttgtggggaaagagcgtcgtgctaaatagcaccgctctat 137  Q
    ||||||||||||||  || |||  ||| |||| ||||| || ||| |||||||||||||||||||||| |||||||||||||||    
T  3443973 taatagagcaaattatgtatagattttatgctagtcgtgcagattcgtggggaaagagcgtcgtgctatatagcaccgctctat 3444056  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 32827212 - 32827078
Alignment:
Q  1 ttgttttagtatttagtttgttgttgtaattatgctgacaatattgcaagcct-tataatagagcaaattgggtgtagtttgtgctggtcgtacaaattt 99  Q
    |||||||||  ||||||||||||||||| ||||||||||| |  |||||| ||  | || ||||||||||||||||||||||||||||||| |||||||     
T  32827212 ttgttttagcgtttagtttgttgttgtatttatgctgacagttatgcaagtctaaaaaaaagagcaaattgggtgtagtttgtgctggtcggacaaattc 32827113  T
Q  100 gtggggaaagagcgtcgtgctaaatagcaccgctc 134  Q
     ||||||||||||||||||  ||||||||||||||    
T  32827112 atggggaaagagcgtcgtgtcaaatagcaccgctc 32827078  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 332 - 399
Target Start/End: Complemental strand, 39299931 - 39299865
Alignment:
Q  332 ttatgagcatttacctaaaagctttatatttttatgttaattaatttattgatatgtgacaataatgt 399  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  39299931 ttatgagcatttacctaaaagctt-atatttttatgttaattaatttattgatatttgacaataatgt 39299865  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 39300026 - 39299936
Alignment:
Q  146 ttaatacaatatgatatagtaataaaaa-tcattt-atgttgattgagtctaatatactctcatgagatgtcataaaaaagagaatataaa 234  Q
    |||||||||||||||| ||||| ||||| |||||| |||||| |  |||||||||||||||||||| |||| || ||||||||||||||||    
T  39300026 ttaatacaatatgatacagtaaaaaaaaatcattttatgttgttctagtctaatatactctcatgaaatgtgatgaaaaagagaatataaa 39299936  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 465
Target Start/End: Complemental strand, 26879882 - 26879729
Alignment:
Q  330 gattatgagcatttacctaaaagctt--tatatttttatgttaattaatttattgatatgtgacaataatgt---------gata------cgtgaaaaa 412  Q
    ||||||||||||||| ||||||||||  |||||||||||||| |||||||| ||||||||||||||||| ||         ||||       |||||||     
T  26879882 gattatgagcatttaactaaaagcttattatatttttatgttgattaatttgttgatatgtgacaataaagtattttataggataattgagtgtgaaaag 26879783  T
Q  413 catcaaacttacaaaagattatgcta-cgagttgtaaaaaataagaaaactact 465  Q
    |||||||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  26879782 catcaaacttaccaaagattatgctattgagttgtaaaaaataagaaaactact 26879729  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 24908128 - 24908210
Alignment:
Q  56 taatagagcaaattgggtgtag--tttgtgctggtcgtacaaatttgtggggaaagagcgtcgtgctaaatagcaccgctcta 136  Q
    ||||||||||||||| ||||||  ||| |||| ||||| || ||| |||||||||||||| ||||||| ||||||||||||||    
T  24908128 taatagagcaaattgtgtgtagattttatgctagtcgtgcagattcgtggggaaagagcgccgtgctatatagcaccgctcta 24908210  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 24908209 - 24908287
Alignment:
Q  59 tagagcaaattgggtgtag--tttgtgctggtcgtacaaatttgtggggaaagagcgtcgtgctaaatagcaccgctct 135  Q
    |||||||||||| ||||||  ||| |||| ||||| || ||| |||||||||||||||||||||| |||||||||||||    
T  24908209 tagagcaaattgtgtgtagattttatgctagtcgtgcagattcgtggggaaagagcgtcgtgctatatagcaccgctct 24908287  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 18553888 - 18553818
Alignment:
Q  65 aaattgggtgtagtttgtgctggtcgtacaaatttgtgggg-aaagagcgtcgtgctaaatagcaccgctc 134  Q
    |||||| |||| ||||||||  ||| |||||||| |||||| |||| ||||||||||| ||||||||||||    
T  18553888 aaattgtgtgttgtttgtgcctgtcttacaaattcgtgggggaaagggcgtcgtgctatatagcaccgctc 18553818  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 10215294 - 10215366
Alignment:
Q  58 atagagcaaattgggtgtagtttgtgctggtcgtacaaatttgtggggaaagagcgtcgtgctaaatagcacc 130  Q
    ||||||||||||| ||||||||| ||||  |||| ||||||| | ||| ||||||||||||| | ||||||||    
T  10215294 atagagcaaattgtgtgtagtttatgctaatcgtgcaaatttatagggtaagagcgtcgtgccatatagcacc 10215366  T

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