View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13216_low_1 (Length: 405)
Name: NF13216_low_1
Description: NF13216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13216_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 61 - 405
Target Start/End: Original strand, 53179541 - 53179876
Alignment:
| Q |
61 |
agtagaaattaacagtaaattctaataataaaaatatcggttaaacaaatatcactttttaaatatactccatccgatcctatttataaggaannnnnnn |
160 |
Q |
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| T |
53179541 |
agtagaaattaacagtaaattctaataataaaaatatcggttaaacaaatatcactttttaaatatactcaatatggtcctatttataagaaaacttt-- |
53179638 |
T |
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| Q |
161 |
ngactttttagattcattgagtacatttgtactaaaaaaggaccggagagagtacttatttagaaattatttgtactaaaattatcggtcatatttaatt |
260 |
Q |
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| T |
53179639 |
-gaccttttagattcattgagtacatttatactaaaataggaccgaagggagtagttatttagaaattatttgtactaaaattatcggtcatatttaatt |
53179737 |
T |
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| Q |
261 |
tgaaataaacaacagagtcacgagcttcaacatatgagcttttattagtatgtgtgcacgaagcagcacagtatactaaacttataggaccactacatgc |
360 |
Q |
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| T |
53179738 |
tgaaataaaca---gagtcacgagcttcaacttatgagctttta---gtatgtgtgcacgaagcagcacagtatactaaacttataggaccactacatgc |
53179831 |
T |
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| Q |
361 |
atggcatgcagcagaatcaatggggcatgttacttagttcttgtt |
405 |
Q |
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| T |
53179832 |
atggcatgcagcagaatcaatggggcatgttacttagttcttgtt |
53179876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 53179447 - 53179505
Alignment:
| Q |
1 |
aataaagggtaaatggcaaaatcgttatctgaaattaaattaagggatcatgagactaa |
59 |
Q |
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| T |
53179447 |
aataaagggtaaatggcaaaatcgttatctgaaattaaattaagggatgatgagactaa |
53179505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 13108002 - 13108032
Alignment:
| Q |
18 |
aaaatcgttatctgaaattaaattaagggat |
48 |
Q |
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| T |
13108002 |
aaaatcgttatctgaaattaaattaagggat |
13108032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 7329028 - 7329057
Alignment:
| Q |
19 |
aaatcgttatctgaaattaaattaagggat |
48 |
Q |
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| T |
7329028 |
aaatcgttatctgaaattaaattaagggat |
7329057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 26342466 - 26342438
Alignment:
| Q |
19 |
aaatcgttatctgaaattaaattaaggga |
47 |
Q |
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| T |
26342466 |
aaatcgttatctgaaattaaattaaggga |
26342438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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