View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13216_low_3 (Length: 337)
Name: NF13216_low_3
Description: NF13216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13216_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 41295794 - 41295475
Alignment:
| Q |
1 |
atggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagatacattaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
41295794 |
atggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatatcaggttgagagtttctctttagaagatacataaata |
41295695 |
T |
|
| Q |
101 |
tctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgcttctgttca |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
41295694 |
tctaatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttccgcttctgttta |
41295595 |
T |
|
| Q |
201 |
gttttcgattttgaatttcaggtcagatttatctttcgtttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgtt |
300 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41295594 |
gttttcgatttcgaatttcaggtctgatttatcttcggtttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgtt |
41295495 |
T |
|
| Q |
301 |
cttgagaatgatgttgaaga |
320 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
41295494 |
cttgaaaatgatgttgaaga |
41295475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 35800696 - 35800766
Alignment:
| Q |
249 |
ggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgttcttgagaatgatgttgaaga |
320 |
Q |
| |
|
|||||||||||||| |||||||||||| || |||| ||||| ||||||||||||||| |||||||||||| |
|
|
| T |
35800696 |
ggttgtatatgctt-cgtttgtgttcaattcttgggatgttgcatttttgttcttgagtgtgatgttgaaga |
35800766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 45048497 - 45048551
Alignment:
| Q |
266 |
tttgtgttcagtttatggggtgttggatttttgttcttgagaatgatgttgaaga |
320 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
45048497 |
tttgtgttcaatttctgggttgttggatttttgttcttgagcgtgatgttgaaga |
45048551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 30550937 - 30550618
Alignment:
| Q |
1 |
atggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagatacattaata |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
30550937 |
atggagcaagaaaagaaaatcacagggttttcagttagatatgcttagaccaaaacataaatatcaggttgagagtttctctttagaggatacatcaata |
30550838 |
T |
|
| Q |
101 |
tctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgcttctgttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30550837 |
tctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgcttctgttta |
30550738 |
T |
|
| Q |
201 |
gttttcgattttgaatttcaggtcagatttatctttcgtttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgtt |
300 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30550737 |
gttttcgatttcgattttcaggtctgatttatctttgttttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgtt |
30550638 |
T |
|
| Q |
301 |
cttgagaatgatgttgaaga |
320 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30550637 |
cttgagaatgatgttgaaga |
30550618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 27690056 - 27690372
Alignment:
| Q |
1 |
atggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagatacattaata |
100 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
27690056 |
atggtgcaagaaaagaaaattacaaggttttcagttagatatgcttagaccaaaacataaatatcgggttgagagtttctctttagaagatacatcaata |
27690155 |
T |
|
| Q |
101 |
tctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgcttctgttca |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27690156 |
tctgatggaagtccatttttttgaagtgtgaacaaccacacggttaatagcagaatggacgttgatacaagtctcgtcttcgattttctgcttctgttca |
27690255 |
T |
|
| Q |
201 |
gttttcgattttgaatttcaggtcagatttatctttcgtttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgtt |
300 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27690256 |
gttttcgatttcgtttttcaggtctgatttatcttcgatttatgattgggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgtt |
27690355 |
T |
|
| Q |
301 |
cttgagaatgatgttga |
317 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
27690356 |
cttgagcatgatgttga |
27690372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 4 - 320
Target Start/End: Complemental strand, 22766186 - 22765871
Alignment:
| Q |
4 |
gagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagatacattaatatct |
103 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
22766186 |
gagcaagaaaagaaaattatagggttttctgttagatatgcttaaaccaaaacataaatatcgggttgagagtttctctttagaagatacatcaatatct |
22766087 |
T |
|
| Q |
104 |
gatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgcttctgttcagtt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
22766086 |
gatggaagtccaattttttgaagtgtgaacaaccacacggttaatagcagaatggacgttgatacaagtttcgtcttcaattttctgcttctgttgcgtt |
22765987 |
T |
|
| Q |
204 |
ttcgattttgaatttcaggtcagatttatctttcgtttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgttctt |
303 |
Q |
| |
|
|||||||| || ||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22765986 |
ttcgatttcgattttcaggtctgatttatcttcgatttatgatt-ggttgtatatgctttcgtttgtgtttagtttatggggtgttggatttttgttctt |
22765888 |
T |
|
| Q |
304 |
gagaatgatgttgaaga |
320 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
22765887 |
gagcatgatgttgaaga |
22765871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 45 - 319
Target Start/End: Complemental strand, 37623891 - 37623617
Alignment:
| Q |
45 |
ttagaccaaaacataaatattaggttgagagtttcgctttagaagatacattaatatctgatggaagtccaattttttgaagtgtgaacaaccacacggt |
144 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37623891 |
ttagaccaaaacataaatatcaggttgagagtttctctttataagatacattaatatataatggaagtccaattttttgaagtgtgaacaaccacacggt |
37623792 |
T |
|
| Q |
145 |
taacagcagaatggacgttgatacaagtttcgtcttcgattttctgcttctgttcagttttcgattttgaatttcaggtcagatttatctttcgtttatg |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
37623791 |
taacagcagaatggacgttgatacaagtttcgtcttcgattttctgcttctgttcagttttttatttcgaatttcaggtctgatttatcttcggtttatg |
37623692 |
T |
|
| Q |
245 |
attaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgttcttgagaatgatgttgaag |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37623691 |
attaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgttcttgagaatgatgttgaag |
37623617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 34902335 - 34902024
Alignment:
| Q |
1 |
atggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagatacattaata |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
34902335 |
atggagtaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacattaatatcgggttgagagtttctctttagaagatacatcaata |
34902236 |
T |
|
| Q |
101 |
tctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgcttctgttca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34902235 |
tctgatggaagtccaattttttgaagtgtgaacaaccacacggttaatagcagaatggatgttgatacaaatttcgtcttcgattttctgcttctgttca |
34902136 |
T |
|
| Q |
201 |
gttttcgattttgaatttcaggtcagatttatctttcgtttatgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgtt |
300 |
Q |
| |
|
||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
34902135 |
gttttcgat------tttcaggtgttatttatcttcgatttatgattaggttgtatatgctttcgtttgtgatcagtttaaggggtgttggatttttgtt |
34902042 |
T |
|
| Q |
301 |
cttgagaatgatgttgaa |
318 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
34902041 |
cttgagcatgatgttgaa |
34902024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 143 - 320
Target Start/End: Complemental strand, 13360903 - 13360726
Alignment:
| Q |
143 |
gttaacagcagaatggacgttgatacaagtttcgtcttcgattttctgcttctgttcagttttcgattttgaatttcaggtcagatttatctttcgttta |
242 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| |||| |
|
|
| T |
13360903 |
gttaatagcataatggacgttgatacaagtttcgtcttcgattttctgcttctgttcagttttcgatttcgattttcaggtctgatttatcttagattta |
13360804 |
T |
|
| Q |
243 |
tgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgttcttgagaatgatgttgaaga |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13360803 |
tgattaggttgtatatgctttcgtttgtgttcagtttatggggtgttggatttttgttcttgagcatgatgttgaaga |
13360726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 13362929 - 13362783
Alignment:
| Q |
1 |
atggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagatacattaata |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||| |
|
|
| T |
13362929 |
atggagcaacaaaagaaaattacagggttttcagttagatatgcttagaccaaaatataaatatcgagttgagagtttctctttagaagatacatcaata |
13362830 |
T |
|
| Q |
101 |
tctgatggaagtccaattttttgaagtgtgaacaaccacacggttaa |
147 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13362829 |
tttgatggaagtccaattttttgaagtgtgaacaaccacacggttaa |
13362783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 22608376 - 22608213
Alignment:
| Q |
1 |
atggagcaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatattaggttgagagtttcgctttagaagatacattaata |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||| |
|
|
| T |
22608376 |
atggaacaagaaaagaaaattacagggttttcagttagatatgcttagaccaaaacataaatgccgggttgagagtttctcttcagaagatacatcaatg |
22608277 |
T |
|
| Q |
101 |
tctgatggaagtccaattttttgaagtgtgaacaaccacacggttaacagcagaatggacgttg |
164 |
Q |
| |
|
||||||| ||||||||||||| | |||| |||||||||||||||||| ||||||||||| |||| |
|
|
| T |
22608276 |
tctgatgaaagtccaatttttggtagtgcgaacaaccacacggttaatagcagaatggatgttg |
22608213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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