View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13216_low_4 (Length: 306)
Name: NF13216_low_4
Description: NF13216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13216_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 1529896 - 1529718
Alignment:
| Q |
1 |
atcaatattagaagatttcatataacccaataattagaaggttgcaattttaaatttaatttagggattcttgatgttgtaacagcaaagtaatgaaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1529896 |
atcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaacagcaaagtaatgaaaga |
1529797 |
T |
|
| Q |
101 |
atagactcacctttgaagcaaagagtaaggacgacggagaaa-gattgtcggcgtaacacatgttgtctcggacgaagc |
178 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
1529796 |
atagactcacctttgaagcaaagagcaaggacgacggagaaacgattgtcggcgcaacacatgttgtctcagacgaagc |
1529718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 26841671 - 26841487
Alignment:
| Q |
1 |
atcaatattagaagatttcatataacccaataattagaaggttgcaattttaaatttaatttagggattcttgatgttgtaacag------caaagtaat |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26841671 |
atcaatattagaagatttcatataacccaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaacaggcacaacaaagtaac |
26841572 |
T |
|
| Q |
95 |
gaaagaatagactcacctttgaagcaaagagtaaggacgacggagaaa-gattgtcggcgtaacacatgttgtctcggacgaagc |
178 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
26841571 |
gaaagaatagactcgcctttgaagcaaagagcaaggacgacggagaaacgattgtcggcgcaacacatgttgtctccgacgaagc |
26841487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 22476822 - 22476946
Alignment:
| Q |
1 |
atcaatattagaagatttcatataacccaataattagaaggttgcaattttaaatttaatttagggattcttgatgttgtaacagcaaagtaatgaaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
22476822 |
atcaatattagaagatttcatataaccaaataattagaaggctgcaattttaaaattaatttagggatttctcatgttgtaacaacaaagtaatgaaaga |
22476921 |
T |
|
| Q |
101 |
atagactcacctttgaagcaaagag |
125 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
22476922 |
atagactcacctttgaagcaaagag |
22476946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 26841433 - 26841396
Alignment:
| Q |
232 |
cgttatggccgaacatggctgttccggcaaggttttat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26841433 |
cgttatggccgaacatggctgttccggcgaggttttat |
26841396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University