View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13216_low_5 (Length: 258)
Name: NF13216_low_5
Description: NF13216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13216_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 34875523 - 34875272
Alignment:
| Q |
1 |
tttccttgaaaaggttgtatttctatgatttagttttcatcaatcagtggaatgtttatagtcctttataggattgaatttgaatgtgtta--gagttaa |
98 |
Q |
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| T |
34875523 |
tttccttgaaaaggttgtatttctatgatttagttttcatcaatcagtggaatgtttatagtcctttataggattgaatttgaatgtgttatagagttaa |
34875424 |
T |
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| Q |
99 |
actgactttatttttggcatttggaatatgaaaggtgtgggggaagaccgagtcaaaactctatggtcctaaaactggaactgattataaagataatcaa |
198 |
Q |
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| T |
34875423 |
actgactttatttttggcatttggaatatgaaaggtgtgggggaagaccgagtcaaaactctatggtcctaaaactggaactgattataaagataatcaa |
34875324 |
T |
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| Q |
199 |
cttagattcagcttgttatgtcaggtaactttttgctttatattttctacct |
250 |
Q |
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| T |
34875323 |
cttagattcagcttgttatgtcaggtaactttttgctttatattttctacct |
34875272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 25077358 - 25077422
Alignment:
| Q |
95 |
ttaaactgactttattttt-ggcatttggaatatgaaaggtgtgggggaagaccgagtcaaaact |
158 |
Q |
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| T |
25077358 |
ttaaactgactttattttttggcttttggaatctgacaagtgtgggggaaggcctagtcaaaact |
25077422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 25135327 - 25135391
Alignment:
| Q |
95 |
ttaaactgactttattttt-ggcatttggaatatgaaaggtgtgggggaagaccgagtcaaaact |
158 |
Q |
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| T |
25135327 |
ttaaactgactttattttttggcttttggaatctgacaagtgtgggggaaggcctagtcaaaact |
25135391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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