View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13216_low_6 (Length: 234)
Name: NF13216_low_6
Description: NF13216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13216_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 39439211 - 39439415
Alignment:
| Q |
14 |
cacagacaccggtagtaatttaagaaaatgtaaaaattgaatgtaatcacacagacacgtgtcagacaccagagacgtcttccatcagaagtgtaagtgc |
113 |
Q |
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| T |
39439211 |
cacaaacaccggtagtaatttaagaaaatgtaaaaattgaatgtaatcacacagacacgtgtcagacaccagagacgtcttcgatcagaagtgtaagtgc |
39439310 |
T |
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| Q |
114 |
tatagagataaataatcccataacagtaaagaactaaattgagtgagagattgtttagtttgttaccccaaccaacggaaatgcgatgagaatgaacgag |
213 |
Q |
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| T |
39439311 |
tatagagataaataatcccataacagtagagaactaaattgagtgagagattgtttagtttgttaccccaaccaacggaaatgcgacgagaatgaacgag |
39439410 |
T |
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| Q |
214 |
ttttg |
218 |
Q |
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||||| |
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| T |
39439411 |
ttttg |
39439415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 10164464 - 10164509
Alignment:
| Q |
19 |
acaccggtagtaatttaagaaaatgtaaaaattgaatgtaatcaca |
64 |
Q |
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| T |
10164464 |
acaccggtagtaatttaagaaaatggcataattgaatgtaatcaca |
10164509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 10435140 - 10435092
Alignment:
| Q |
17 |
agacaccggtagtaattt-aagaaaatgtaaaaattgaatgtaatcaca |
64 |
Q |
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| T |
10435140 |
agacaccggtagtaatttaaaaaaaatgacaaaattgaatgtaatcaca |
10435092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 28136264 - 28136322
Alignment:
| Q |
62 |
acacagacacgtgtcagacaccagagacgtcttccatcagaagtgtaagtgctatagag |
120 |
Q |
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| T |
28136264 |
acactgacacatgtcagacaccagacacgtcttcgatcagaagtgtcagtgctatagag |
28136322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 21238823 - 21238863
Alignment:
| Q |
24 |
ggtagtaatttaagaaaatgtaaaaattgaatgtaatcaca |
64 |
Q |
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| T |
21238823 |
ggtagtaatttaagaaaatgtcaaaattgaatgtaatcaca |
21238863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 32691743 - 32691789
Alignment:
| Q |
18 |
gacaccggtagtaatttaagaaaatgtaaaaattgaatgtaatcaca |
64 |
Q |
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| T |
32691743 |
gacaccggtagtaatttaagaaaatgacataattgaatgtaatcaca |
32691789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 16657463 - 16657427
Alignment:
| Q |
72 |
gtgtcagacaccagagacgtcttccatcagaagtgta |
108 |
Q |
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| T |
16657463 |
gtgtctgacaccagacacgtcttccatcagaagtgta |
16657427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 13635632 - 13635676
Alignment:
| Q |
71 |
cgtgtcagacaccagagacgtcttccatcagaagtgtaagtgcta |
115 |
Q |
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| T |
13635632 |
cgtgtcagacaccagacacgccttctatcagaagtgtcagtgcta |
13635676 |
T |
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