View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13217_high_11 (Length: 350)
Name: NF13217_high_11
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_high_11 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 157 - 350
Target Start/End: Original strand, 54300054 - 54300247
Alignment:
| Q |
157 |
tttgatctttttatttatagtttaatagggctatatctgttcaaatcaatctaattgttgtaccaaatattcttccctgctgctggttgtatcattaatt |
256 |
Q |
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| T |
54300054 |
tttgatctttttatttatagtttaatagggctatatctgttcaaatcaatctaattgttgtaccaaatattcttccctgctgctggctgtatcattaatt |
54300153 |
T |
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| Q |
257 |
tagcttgcttattttgattatcaagtttctaggtgaatgaatgcatgcacacttttaatgtttttatgtttatgtcctattccatcttctgatc |
350 |
Q |
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| T |
54300154 |
tagcttgcttattttgattatcaagtttctaggtgaatgaatgcatgcacacttttaatgtttttatgtttatgtcctattccatcttctgatc |
54300247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 54294836 - 54294981
Alignment:
| Q |
15 |
aataaccacaatcatataattctttgtgtaaacaagaataacaattaacaacttattcctccaataggactgatactttccttgtaaattatgatccgat |
114 |
Q |
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| T |
54294836 |
aataaccacaatcatataattctttgtgtaaacaagaataacaattaacaacttattcctccaataggactgatactttccttgtaaattatgatccgat |
54294935 |
T |
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| Q |
115 |
gacattgaggaaacatcactttatgaccaagctcctcaatcatttg |
160 |
Q |
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| T |
54294936 |
gacattgaggaaacatcactttatgaccaagctcctcaatcatttg |
54294981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 157 - 297
Target Start/End: Original strand, 54306207 - 54306346
Alignment:
| Q |
157 |
tttgatctttttatttatagtttaatagggctatatctgttcaaatcaatctaattgttgtaccaaatattcttccctgctgctggttgtatcattaatt |
256 |
Q |
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| T |
54306207 |
tttgatcttttaatttatagttttatagggctatatttgttcaaatcaatctaattgttgtaccaaaaattcttcgctgttgctggttgtatcattaa-t |
54306305 |
T |
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| Q |
257 |
tagcttgcttattttgattatcaagtttctaggtgaatgaa |
297 |
Q |
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| T |
54306306 |
tagattgcttattttgattatcaagtttctaggtgaatgaa |
54306346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 349
Target Start/End: Original strand, 54287514 - 54287668
Alignment:
| Q |
195 |
gttcaaatcaatctaattgttgtaccaaatattcttccctgctgctggttgtatcattaatttagcttgcttattttgattatcaagtttctaggtgaat |
294 |
Q |
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| T |
54287514 |
gttcaaatgaatcatattgttgtaccatacattctaacctgctgctggttgtatcattaa-ttagcttgcttattgtgattatcaagtttcttagtgatt |
54287612 |
T |
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| Q |
295 |
gaatgcatgcacacttttaatgtttttat-gtttatgtcctattccatcttctgat |
349 |
Q |
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| T |
54287613 |
gaaagcagacacacttctaatatttgtatattttatgtcctgttccatcttgtgat |
54287668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 54287439 - 54287473
Alignment:
| Q |
156 |
atttgatctttttatttatagtttaatagggctat |
190 |
Q |
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| T |
54287439 |
atttgatctttttatttttagtttaatagggctat |
54287473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 42446658 - 42446592
Alignment:
| Q |
13 |
tcaataaccacaatcatataattctttgtgtaaacaagaataacaattaacaacttattcctccaat |
79 |
Q |
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| T |
42446658 |
tcaagaaccacaatcatatacctcttggtgaaaacaagaaaaacaattaattaattattcctccaat |
42446592 |
T |
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