View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13217_high_16 (Length: 287)

Name: NF13217_high_16
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13217_high_16
NF13217_high_16
[»] chr7 (4 HSPs)
chr7 (45-280)||(33346772-33347007)
chr7 (46-236)||(33353801-33353989)
chr7 (79-124)||(44241858-44241903)
chr7 (94-150)||(28165105-28165161)
[»] chr5 (8 HSPs)
chr5 (77-145)||(34690870-34690938)
chr5 (71-116)||(34117570-34117615)
chr5 (100-170)||(11457119-11457189)
chr5 (82-145)||(40205079-40205142)
chr5 (79-124)||(17368675-17368720)
chr5 (92-141)||(37611224-37611273)
chr5 (92-141)||(37787954-37788003)
chr5 (77-141)||(33533548-33533612)
[»] chr6 (8 HSPs)
chr6 (71-124)||(24838769-24838822)
chr6 (77-124)||(33067155-33067202)
chr6 (94-141)||(30641759-30641806)
chr6 (71-124)||(25100034-25100087)
chr6 (92-124)||(2205616-2205648)
chr6 (92-124)||(2455822-2455854)
chr6 (76-124)||(10476148-10476195)
chr6 (80-116)||(31812047-31812083)
[»] chr2 (8 HSPs)
chr2 (92-145)||(34652041-34652094)
chr2 (92-145)||(1939337-1939390)
chr2 (79-124)||(15780076-15780121)
chr2 (92-125)||(36852484-36852517)
chr2 (76-116)||(656811-656851)
chr2 (80-124)||(6988115-6988159)
chr2 (77-141)||(16867736-16867800)
chr2 (76-108)||(29628785-29628817)
[»] chr8 (7 HSPs)
chr8 (95-150)||(7918446-7918501)
chr8 (71-165)||(39551193-39551288)
chr8 (80-145)||(5088852-5088917)
chr8 (47-124)||(6509329-6509406)
chr8 (92-149)||(33714237-33714294)
chr8 (76-124)||(7918799-7918847)
chr8 (92-124)||(10437896-10437928)
[»] chr1 (8 HSPs)
chr1 (47-121)||(17422967-17423041)
chr1 (76-124)||(35590918-35590966)
chr1 (71-117)||(25005830-25005876)
chr1 (47-141)||(30257650-30257744)
chr1 (71-116)||(25006068-25006113)
chr1 (76-116)||(29793778-29793818)
chr1 (76-124)||(37842381-37842429)
chr1 (76-124)||(39596593-39596641)
[»] chr3 (7 HSPs)
chr3 (71-145)||(43875639-43875715)
chr3 (92-179)||(37273146-37273234)
chr3 (47-116)||(24887317-24887386)
chr3 (72-121)||(33965518-33965567)
chr3 (92-124)||(23793596-23793628)
chr3 (80-144)||(43875465-43875529)
chr3 (92-124)||(44284106-44284138)
[»] chr4 (4 HSPs)
chr4 (76-114)||(16494841-16494879)
chr4 (80-145)||(2996573-2996638)
chr4 (92-145)||(23819101-23819154)
chr4 (80-124)||(56007679-56007723)
[»] scaffold0167 (1 HSPs)
scaffold0167 (79-124)||(17275-17320)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 45 - 280
Target Start/End: Original strand, 33346772 - 33347007
Alignment:
Q  45 tggatataataaagtcaagctgcatgcataaaagctataagttgatctcataagctatcttggagagcttatagaaataattcggaaacagcttatggac 144  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33346772 tggataaaataaagtcaagctgcatgcataaaagctataagttgatctcataagctatcttggagagcttatagaaataattcggaaacagcttatggac 33346871  T
Q  145 aagtctatgttttttccataatctctaccatacaggaacaagtgtttttgctagctagtatggtcaaataagccagaaggcacatagtcgatgataatag 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33346872 aagtctatgttttttccataatctctaccatacaggaacaagtgtttttgctagctagtatggtcaaataagccagaaggcacatagtcgatgataatag 33346971  T
Q  245 aaatacagttaaaatttaaaactaatcatacctttg 280  Q
    |||||||||||||||| ||||||||||||| |||||    
T  33346972 aaatacagttaaaattaaaaactaatcataactttg 33347007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 33353801 - 33353989
Alignment:
Q  46 ggatataataaagtcaagctgcatgcataaaagctataagttgatctcataagctatcttggagagcttatagaaataattcg-gaaacagcttatggac 144  Q
    ||||| |||||||||||||||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||||  ||  |||||||| ||||||    
T  33353801 ggataaaataaagtcaagctgcatgcatatcaggtataagttgatctcataagctatcttggagaacttatagaaataagccgaaaaacagctgatggac 33353900  T
Q  145 aagtc-tatgttttttccataatctctaccatacaggaacaagtgtttttgctagctagtatggtcaaataagccagaaggcacatagtcgat 236  Q
    || || || |||||||||||||||||||||||| ||||||||||||||||    ||||||| ||||||||||||||| |||||||||||||||    
T  33353901 aactcttaagttttttccataatctctaccatataggaacaagtgttttt----gctagtaaggtcaaataagccagtaggcacatagtcgat 33353989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 44241858 - 44241903
Alignment:
Q  79 ctataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    |||||||||| | ||||||||||||||| | |||||||||||||||    
T  44241858 ctataagttgttttcataagctatcttgaatagcttatagaaataa 44241903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 28165105 - 28165161
Alignment:
Q  94 ataagctatcttggagagcttatagaaataattcggaaacagcttatggacaagtct 150  Q
    |||||||||| |||||||||||| ||||||| | | |||||||||||| ||| ||||    
T  28165105 ataagctatcatggagagcttatggaaataagttgaaaacagcttatgaacaggtct 28165161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 34690870 - 34690938
Alignment:
Q  77 agctataagttgatctcataagctatcttggagagcttatagaaataattcggaaacagcttatggaca 145  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||| |||  |||| ||||||||||    
T  34690870 agctataagttgttctcataagccatcttggagagcttatggaaataagtcgataacaacttatggaca 34690938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 34117615 - 34117570
Alignment:
Q  71 cataaaagctataagttgatctcataagctatcttggagagcttat 116  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||    
T  34117615 catataagctataagttgctttcataagctatcttggagagcttat 34117570  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 11457119 - 11457189
Alignment:
Q  100 tatcttggagagcttatagaaataattcggaaacagcttatggacaagtc-tatgttttttccataatctct 170  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||| ||| || ||| ||||||||| ||||    
T  11457119 tatcttggagagcttatagaaataa-tatgaaacagcttatggacatgtcataagttgtttccataagctct 11457189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 40205142 - 40205079
Alignment:
Q  82 taagttgatctcataagctatcttggagagcttatagaaataattcggaaacagcttatggaca 145  Q
    ||||||| | |||||||||||| ||||||||||||||||||||   | |||||| |||||||||    
T  40205142 taagttgttttcataagctatcctggagagcttatagaaataagctgaaaacagattatggaca 40205079  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 17368675 - 17368720
Alignment:
Q  79 ctataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    |||||||||| | |||||||||||||||||||| |||| |||||||    
T  17368675 ctataagttgttttcataagctatcttggagaggttatggaaataa 17368720  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 37611273 - 37611224
Alignment:
Q  92 tcataagctatcttggagagcttatagaaataattcggaaacagcttatg 141  Q
    ||||||||||||||||||||||||| |||||||   | ||||||||||||    
T  37611273 tcataagctatcttggagagcttatggaaataacctgaaaacagcttatg 37611224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 37788003 - 37787954
Alignment:
Q  92 tcataagctatcttggagagcttatagaaataattcggaaacagcttatg 141  Q
    ||||||||||||||||||||||||| |||||||   | ||||||||||||    
T  37788003 tcataagctatcttggagagcttatggaaataacctgaaaacagcttatg 37787954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 33533612 - 33533548
Alignment:
Q  77 agctataagttgatctcataagctatcttggagagcttatagaaataattcggaaacagcttatg 141  Q
    ||||||||| || | ||| ||||||||||||||||||||| ||||||| | | ||||| ||||||    
T  33533612 agctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaacttatg 33533548  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 24838822 - 24838769
Alignment:
Q  71 cataaaagctataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    |||| |||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  24838822 catataagctataagctgatttcataagctatcatggagagcttatagaaataa 24838769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 33067155 - 33067202
Alignment:
Q  77 agctataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    |||||||||||| | ||||||||||||||||||||||| |||||||||    
T  33067155 agctataagttgttttcataagctatcttggagagcttgtagaaataa 33067202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 30641759 - 30641806
Alignment:
Q  94 ataagctatcttggagagcttatagaaataattcggaaacagcttatg 141  Q
    |||||||||||||||||||||||  | |||||| ||||||||||||||    
T  30641759 ataagctatcttggagagcttatgaatataattaggaaacagcttatg 30641806  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 25100034 - 25100087
Alignment:
Q  71 cataaaagctataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    |||| ||| ||||||||| | ||||||||||||||  |||||||||||||||||    
T  25100034 catagaagttataagttgttttcataagctatcttaaagagcttatagaaataa 25100087  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 2205648 - 2205616
Alignment:
Q  92 tcataagctatcttggagagcttatagaaataa 124  Q
    ||||||||||||||||||||||||| |||||||    
T  2205648 tcataagctatcttggagagcttatggaaataa 2205616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 2455822 - 2455854
Alignment:
Q  92 tcataagctatcttggagagcttatagaaataa 124  Q
    ||||||||||||||||||||||||| |||||||    
T  2455822 tcataagctatcttggagagcttatggaaataa 2455854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 10476195 - 10476148
Alignment:
Q  76 aagctataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    ||||| ||||||| | ||||||||||||||||||||| |||||||||||    
T  10476195 aagctgtaagttgttttcataagctatcttggagagc-tatagaaataa 10476148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 31812083 - 31812047
Alignment:
Q  80 tataagttgatctcataagctatcttggagagcttat 116  Q
    ||||||||| | |||||||||||||||||||||||||    
T  31812083 tataagttgttttcataagctatcttggagagcttat 31812047  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 34652094 - 34652041
Alignment:
Q  92 tcataagctatcttggagagcttatagaaataattcggaaacagcttatggaca 145  Q
    ||||||||||||||||||||||||| ||||||| | | ||||||||||||||||    
T  34652094 tcataagctatcttggagagcttatggaaataagttgaaaacagcttatggaca 34652041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 1939390 - 1939337
Alignment:
Q  92 tcataagctatcttggagagcttatagaaataattcggaaacagcttatggaca 145  Q
    |||||||||||  |||||||||||| ||||||| | | ||||||||||||||||    
T  1939390 tcataagctatactggagagcttatggaaataagttgaaaacagcttatggaca 1939337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 15780076 - 15780121
Alignment:
Q  79 ctataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    |||||||||| | |||||||||||| || |||||||||||||||||    
T  15780076 ctataagttgttttcataagctatcgtgcagagcttatagaaataa 15780121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 36852484 - 36852517
Alignment:
Q  92 tcataagctatcttggagagcttatagaaataat 125  Q
    ||||||||||||||||||||||||| ||||||||    
T  36852484 tcataagctatcttggagagcttatggaaataat 36852517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 656851 - 656811
Alignment:
Q  76 aagctataagttgatctcataagctatcttggagagcttat 116  Q
    ||||| ||||||||| ||||||||||||||| |||||||||    
T  656851 aagctgtaagttgatttcataagctatcttgcagagcttat 656811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 6988115 - 6988159
Alignment:
Q  80 tataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    ||||||||| | ||||||||||||||| |||| ||||||||||||    
T  6988115 tataagttgttttcataagctatcttgaagagtttatagaaataa 6988159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 16867736 - 16867800
Alignment:
Q  77 agctataagttgatctcataagctatcttggagagcttatagaaataattcggaaacagcttatg 141  Q
    ||||||||| || | ||| ||||||||||||||||||||| ||||||| | | ||||| ||||||    
T  16867736 agctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaacttatg 16867800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 29628817 - 29628785
Alignment:
Q  76 aagctataagttgatctcataagctatcttgga 108  Q
    ||||||||||||| |||||||||||||||||||    
T  29628817 aagctataagttgttctcataagctatcttgga 29628785  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 7918501 - 7918446
Alignment:
Q  95 taagctatcttggagagcttatagaaataattcggaaacagcttatggacaagtct 150  Q
    |||||||||||||||||||||| ||||||| | |||||||||||||| ||| ||||    
T  7918501 taagctatcttggagagcttattgaaataagttggaaacagcttatgaacatgtct 7918446  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 39551288 - 39551193
Alignment:
Q  71 cataaaagctataagttgatctcataagctatcttggagagcttatagaaataattcggaaacagcttatggacaagtc-tatgttttttccataa 165  Q
    |||| ||||||||||||| | ||||||||| || ||||||||||||| |||||| |   ||||||||| |||||| ||| || ||| |||||||||    
T  39551288 catacaagctataagttgttttcataagctttcctggagagcttataaaaataagttaaaaacagcttttggacatgtcataagttgtttccataa 39551193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 5088852 - 5088917
Alignment:
Q  80 tataagttgatctcataagctatcttggagagcttatagaaataattcggaaacagcttatggaca 145  Q
    ||||||||| | ||| |||| ||| |||||||||||| ||||||| | | ||||||||||||||||    
T  5088852 tataagttgttttcacaagcgatcctggagagcttattgaaataagttgaaaacagcttatggaca 5088917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 6509406 - 6509329
Alignment:
Q  47 gatataataaagtcaagctgcatgcataaaagctataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    |||| |||||||||||  || ||  ||| |||||||||| || | |||||||||||| |||||||||||| |||||||    
T  6509406 gataaaataaagtcaaattgtatttatataagctataagctgttttcataagctatcctggagagcttattgaaataa 6509329  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 33714294 - 33714237
Alignment:
Q  92 tcataagctatcttggagagcttatagaaataattcggaaacagcttatggacaagtc 149  Q
    ||||||||||||| |||||||||||| ||||||   | |||||||||||| |||||||    
T  33714294 tcataagctatctgggagagcttataaaaataagctgaaaacagcttatgaacaagtc 33714237  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 7918847 - 7918799
Alignment:
Q  76 aagctataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    ||||||||||||| | ||||||||||||||| ||||||| | |||||||    
T  7918847 aagctataagttgttttcataagctatcttgtagagcttgtggaaataa 7918799  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 10437896 - 10437928
Alignment:
Q  92 tcataagctatcttggagagcttatagaaataa 124  Q
    |||||||||||||| ||||||||||||||||||    
T  10437896 tcataagctatcttcgagagcttatagaaataa 10437928  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 17423041 - 17422967
Alignment:
Q  47 gatataataaagtcaagctgcatgcataaaagctataagttgatctcataagctatcttggagagcttatagaaa 121  Q
    |||| |||||||||||||||  | |||| ||||||||||||| | ||||| |||||| ||||||| |||||||||    
T  17423041 gataaaataaagtcaagctgatttcatataagctataagttgttttcatatgctatcatggagaggttatagaaa 17422967  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 35590966 - 35590918
Alignment:
Q  76 aagctataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    ||||||||||| ||| |||||||||||| |||||||||||| |||||||    
T  35590966 aagctataagtcgatttcataagctatcatggagagcttatggaaataa 35590918  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 25005876 - 25005830
Alignment:
Q  71 cataaaagctataagttgatctcataagctatcttggagagcttata 117  Q
    |||| ||||||||||||| | |||||||||||| |||||||||||||    
T  25005876 catataagctataagttgttttcataagctatcctggagagcttata 25005830  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 30257650 - 30257744
Alignment:
Q  47 gatataataaagtcaagctgcatgcataaaagctataagttgatctcataagctatcttggagagcttatagaaataattcggaaacagcttatg 141  Q
    |||| ||||||||||| |||  | |||| ||||| ||||||| | |||||| ||||| ||||| ||||||||||||||   | ||||||||||||    
T  30257650 gataaaataaagtcaaactgtttccatataagctttaagttgttttcataaactatcctggagggcttatagaaataagctgaaaacagcttatg 30257744  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 25006113 - 25006068
Alignment:
Q  71 cataaaagctataagttgatctcataagctatcttggagagcttat 116  Q
    |||| ||||||||||||| | ||||||||||||||||||| |||||    
T  25006113 catataagctataagttgttttcataagctatcttggagatcttat 25006068  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 29793778 - 29793818
Alignment:
Q  76 aagctataagttgatctcataagctatcttggagagcttat 116  Q
    ||||||||||||||  |||||||||||||| ||||||||||    
T  29793778 aagctataagttgagttcataagctatcttcgagagcttat 29793818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 37842429 - 37842381
Alignment:
Q  76 aagctataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    ||||||||||||| | ||||||||||||||| ||| |||||| ||||||    
T  37842429 aagctataagttgttttcataagctatcttgaagaacttataaaaataa 37842381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 39596593 - 39596641
Alignment:
Q  76 aagctataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    |||||||||| || | | |||||||||||||||||||||||| ||||||    
T  39596593 aagctataagatggttttataagctatcttggagagcttataaaaataa 39596641  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 43875639 - 43875715
Alignment:
Q  71 cataaaagctataagttgatctcataagctatcttggagagcttata--gaaataattcggaaacagcttatggaca 145  Q
    |||| ||||||||||||| | |||||||||||| |||||||||||||   ||||||  || ||||||||||||||||    
T  43875639 catataagctataagttgttttcataagctatcatggagagcttatatgaaaataaaacgaaaacagcttatggaca 43875715  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 37273146 - 37273234
Alignment:
Q  92 tcataagctatcttggagagcttatagaaataattcggaaacagcttatggacaagtc-tatgttttttccataatctctaccatacag 179  Q
    ||||||||||||||||||| ||||| ||||||| | | ||||| |||||||||| ||| || ||| ||||||||| |||| ||| ||||    
T  37273146 tcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacag 37273234  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 24887386 - 24887317
Alignment:
Q  47 gatataataaagtcaagctgcatgcataaaagctataagttgatctcataagctatcttggagagcttat 116  Q
    |||| ||||||||||| ||| || |||| |||||| ||| || | |||||||||||| ||||||||||||    
T  24887386 gataaaataaagtcaaactgtattcatataagctaaaagctgttttcataagctatcctggagagcttat 24887317  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 33965567 - 33965518
Alignment:
Q  72 ataaaagctataagttgatctcataagctatcttggagagcttatagaaa 121  Q
    |||||||||||||| || | ||||||||||||||| ||||||||| ||||    
T  33965567 ataaaagctataagatgttttcataagctatcttgaagagcttatggaaa 33965518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 23793596 - 23793628
Alignment:
Q  92 tcataagctatcttggagagcttatagaaataa 124  Q
    ||||||||||||||||| |||||||||||||||    
T  23793596 tcataagctatcttggaaagcttatagaaataa 23793628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 43875465 - 43875529
Alignment:
Q  80 tataagttgatctcataagctatcttggagagcttatagaaataattcggaaacagcttatggac 144  Q
    |||||| || |||||||||||||| |||||| ||||| ||||||||  | ||||| |||||||||    
T  43875465 tataagatgttctcataagctatcctggagaacttatggaaataatcagaaaacaacttatggac 43875529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 44284138 - 44284106
Alignment:
Q  92 tcataagctatcttggagagcttatagaaataa 124  Q
    |||||||||||| ||||||||||||||||||||    
T  44284138 tcataagctatcctggagagcttatagaaataa 44284106  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 16494879 - 16494841
Alignment:
Q  76 aagctataagttgatctcataagctatcttggagagctt 114  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  16494879 aagctataagttgttttcataagctatcttggagagctt 16494841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 2996573 - 2996638
Alignment:
Q  80 tataagttgatctcataagctatcttggagagcttatagaaataattcggaaacagcttatggaca 145  Q
    ||||||||| | ||||||||||||||||||||| |||  |||||| | | ||| ||||||||||||    
T  2996573 tataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggaca 2996638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 23819101 - 23819154
Alignment:
Q  92 tcataagctatcttggagagcttatagaaataattcggaaacagcttatggaca 145  Q
    ||||||||||||||| |||||||||||||||||   | ||||| ||||||||||    
T  23819101 tcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggaca 23819154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 56007679 - 56007723
Alignment:
Q  80 tataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    ||||||||| | | ||||| |||||||||||||||||||||||||    
T  56007679 tataagttgtttttataagttatcttggagagcttatagaaataa 56007723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 17275 - 17320
Alignment:
Q  79 ctataagttgatctcataagctatcttggagagcttatagaaataa 124  Q
    |||||||||| | ||||||||||||||||||| ||||||| |||||    
T  17275 ctataagttgttttcataagctatcttggagaacttatagcaataa 17320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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