View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13217_high_18 (Length: 254)
Name: NF13217_high_18
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 33347158 - 33347396
Alignment:
| Q |
10 |
agaaggaccatggatttcctcacagcatccctagccagttctctatgcacctgttcagaattcaaataagcatagatgagacatttatagggtgatcctt |
109 |
Q |
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| T |
33347158 |
agaaggaccatggatttcctcacagcatccctagccagttctctatgcacctgttcagaattcaaataagcatagatgagacatttatagggtgatcctt |
33347257 |
T |
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| Q |
110 |
ataagatatctaattgtaaacttagggaagtaaaaggaaaataactaaccttaatcccaagatacttgaccaaactgtaatcagcaaaagggttctcaaa |
209 |
Q |
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| T |
33347258 |
ataagatatctaattgtaaacttagggaagtaaaaggaaaataactaaccttaatcccaagatacttgaccaaactgtaatcagcaaaagggttctcaaa |
33347357 |
T |
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| Q |
210 |
aatacccatcatgaatttaacccgcaaaattcttctcac |
248 |
Q |
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| T |
33347358 |
aatacccatcatgaatttaacccgcaaaattcttctcac |
33347396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 33354198 - 33354437
Alignment:
| Q |
10 |
agaaggaccatggatttcctcacagcatccctagccagttctctatgcacctgttcagaattcaaataagcatagatgagacatttatagggtgatcctt |
109 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||| | ||| |||||||| |||| ||| ||||||||| |||| |||||||||||| ||| |
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| T |
33354198 |
agaaggaccatggatttccttacagcttccctagccagttctttgtgctcctgttcaaaatttaaacaagcatagaagagatatttatagggtggtccag |
33354297 |
T |
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| Q |
110 |
ataag--atatctaattgtaaacttagggaagtaaaaggaaaataactaaccttaatcccaagatacttgaccaaactgtaatcagcaaaagggttctca |
207 |
Q |
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| T |
33354298 |
ataagttatatctaattcgaa-cttagggatgtaaaaggaaaatagctaaccttaatcccaagatatttgaccaaactgtaatcggcaaatgggttctca |
33354396 |
T |
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| Q |
208 |
aaaatacccatcatgaatttaacccgcaaaattcttctcac |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
33354397 |
aaaatacccatcatgaatttaacccgcaaaattcttctcac |
33354437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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