View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13217_high_2 (Length: 510)
Name: NF13217_high_2
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 55 - 468
Target Start/End: Complemental strand, 21836300 - 21835898
Alignment:
| Q |
55 |
ctgatagaaaccattatgatagcattcacaaacatatatattgcttttggtttcaacagccaaatgtgagtgtcacattggtttagtgttctacacgagt |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
21836300 |
ctgatagaaaccattatgatagcattcacaaacatatatattgcttttggtttcaacagccaaatgtgagt--cacattggtttagtgttctacatgagt |
21836203 |
T |
|
| Q |
155 |
cc--------aaactcttcgaacaagttgaaatgattttgcaatgaccgagtcttttaactaactattttcacaagttgaatctgcctaaatacctcaac |
246 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21836202 |
cagtacgaataaactcttcgaacaagttgaaatgattttgcaatgaccgagtcttttaattaactattttcacaagttgaatctgtctaaatacctcaac |
21836103 |
T |
|
| Q |
247 |
atttttagaagctcctttatcaaagttttttctatagataaacaccaattaataaacttataaaggcctcttttcaagtaaaagaaacagataattgtct |
346 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21836102 |
atttttagaagctccttgatcaaagttttttttatagataaac--------------ttataaaggcctcttttcaagtaaaagaaacagataattgtct |
21836017 |
T |
|
| Q |
347 |
catttgagaagctctcataagatagaatctatttaaacctagacctaacctaagattgatacaattcatcacatgatttgttagcaaataaagcataggt |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |
|
|
| T |
21836016 |
catttgagaagctctcataagatagaatctattttaacctagacctaacctaagattgatacaattcatcac---attcgttagcaaacaaagcataggt |
21835920 |
T |
|
| Q |
447 |
aacctcagcaattagaataaag |
468 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21835919 |
aacctcagcaattagaataaag |
21835898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 51170558 - 51170522
Alignment:
| Q |
317 |
ttttcaagtaaaagaaacagataattgtctcatttga |
353 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
51170558 |
ttttcaagtaaaagaaacaaataattgtctcaattga |
51170522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 417
Target Start/End: Complemental strand, 6590720 - 6590601
Alignment:
| Q |
300 |
aaacttataaaggcctcttttcaagtaaaagaaacagataattgtctcatttgagaagctctcataagatagaatctatttaaaccta--gacctaacct |
397 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||| |||||| |||||| || ||||||| |
|
|
| T |
6590720 |
aaacttataaaggcttcttttcaagtaaaagaaacaaataattgtctcatttgaaaagctcttgaaagatggaaactattttaacctatggaactaacct |
6590621 |
T |
|
| Q |
398 |
aagattgatacaattcatca |
417 |
Q |
| |
|
||| ||| |||| ||||||| |
|
|
| T |
6590620 |
aaggttgttacatttcatca |
6590601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 361
Target Start/End: Complemental strand, 6584710 - 6584566
Alignment:
| Q |
217 |
cacaagttgaatct-gcctaaatacctcaacatttttagaagctcctttatcaaagttttttctatagataaacaccaattaataaacttataaaggcct |
315 |
Q |
| |
|
|||||||||||| | ||||| || |||| ||||||||||||||||| | ||| ||||||| ||||||||| | | || | | || ||||||||||| | |
|
|
| T |
6584710 |
cacaagttgaattttgcctatatgcctcgacatttttagaagctccctgatctgagttttt-ctatagatagataaaaacttacaagcttataaaggctt |
6584612 |
T |
|
| Q |
316 |
cttttcaagtaaaagaaacagataattgtctcatttgagaagctct |
361 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
6584611 |
cttttcaagtaaaagtaacaaataattgtctcatttgaaaagctct |
6584566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 8537549 - 8537640
Alignment:
| Q |
173 |
ttgaaatgattttgcaatgaccgagtcttttaactaactattttc-aca-agtt-gaatctgcctaaatacctcaacatttttagaagctcc |
261 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||| ||||||||||| || |||| |||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
8537549 |
ttgaaacgatcttgcaatgaccaagtcttttaattaactattttctgcagagttaaaatcagcctatatacctcaacatttttagaagctcc |
8537640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 234837 - 234874
Alignment:
| Q |
316 |
cttttcaagtaaaagaaacagataattgtctcatttga |
353 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
234837 |
cttttcaagtaaaagaaacaaataattgtctcaattga |
234874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 711248 - 711285
Alignment:
| Q |
316 |
cttttcaagtaaaagaaacagataattgtctcatttga |
353 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
711248 |
cttttcaagtaaaagaaacaaataattgtctcaattga |
711285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 748460 - 748497
Alignment:
| Q |
316 |
cttttcaagtaaaagaaacagataattgtctcatttga |
353 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
748460 |
cttttcaagtaaaagaaacaaataattgtctcaattga |
748497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 872355 - 872392
Alignment:
| Q |
316 |
cttttcaagtaaaagaaacagataattgtctcatttga |
353 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
872355 |
cttttcaagtaaaagaaacaaataattgtctcaattga |
872392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 37046722 - 37046690
Alignment:
| Q |
230 |
tgcctaaatacctcaacatttttagaagctcct |
262 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
37046722 |
tgcctatatacctcaacatttttagaagctcct |
37046690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University