View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13217_high_21 (Length: 250)
Name: NF13217_high_21
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 52067008 - 52066777
Alignment:
| Q |
1 |
aattcatattcttaaattattattggtgtcgacgtgtgagtgttgtgtctgatgtctgtgtcggtgctttatnnnnnnncataatttaggcacatgtaac |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| | |
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| T |
52067008 |
aatttatattcttaaattattattggtgtcgacgtgtgagtgttgtgtctgatttctgtgtcggtgctttataaaaaa-cataatttaggcacatgtatc |
52066910 |
T |
|
| Q |
101 |
tacaattaattaattaattcattttcttaaattactattgatgtcgacgtgtcacattgtgttcgatgtttcatnnnnnnncagaatttaggcatttgtt |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
52066909 |
tacaattaattaattaattcatttttttaaattactattgatgtcgatgtgtcacgttgtgttcgatgtttcataaaaaaacagaatttaggcatttgtt |
52066810 |
T |
|
| Q |
201 |
aaagttcaattgttgagattgtaacgaagtttt |
233 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
52066809 |
aaagttcaattgttgagattgtaacgaagtttt |
52066777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 52067125 - 52066972
Alignment:
| Q |
1 |
aattcatattcttaaattattattggtgtcgacgtgtgagtgttgtgtctgatgtctgtgtcggtgctttatnnnnnnncataatttaggcacatgtaac |
100 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||||| ||||||||||| | ||||||| | |||||| || || |||||||||||||||||| |
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| T |
52067125 |
aattcattttcttaaattattattggtatcgacgtgtcagtgttgtgtccggtgtctgt--cagtgcttcataaaaaaacacaatttaggcacatgtaac |
52067028 |
T |
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| Q |
101 |
tacaattaattaattaattcatt----ttcttaaattactattgatgtcgacgtgt |
152 |
Q |
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| T |
52067027 |
tacaattaattaattaattaatttatattcttaaattattattggtgtcgacgtgt |
52066972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 52067147 - 52067087
Alignment:
| Q |
94 |
atgtaactacaattaattaattaattcattttcttaaattactattgatgtcgacgtgtca |
154 |
Q |
| |
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||||||||| ||| ||||||||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
52067147 |
atgtaactataatcaattaattaattcattttcttaaattattattggtatcgacgtgtca |
52067087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43886623 - 43886568
Alignment:
| Q |
1 |
aattcatattcttaaattattattggtgtcgacgtgtgagtgttgtgtctgatgtc |
56 |
Q |
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||||||| ||||||||||||| |||||||||||||| ||||||||||||| |||| |
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|
| T |
43886623 |
aattcattatcttaaattattactggtgtcgacgtgttagtgttgtgtctggtgtc |
43886568 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9878062 - 9878104
Alignment:
| Q |
1 |
aattcatattcttaaattattattggtgtcgacgtgtgagtgt |
43 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
9878062 |
aattcatattctcaaattattattggtgtcgacgtgtcagtgt |
9878104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 9897915 - 9897953
Alignment:
| Q |
4 |
tcatattcttaaattattattggtgtcgacgtgtgagtg |
42 |
Q |
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| T |
9897915 |
tcatattctcaaattattattggtgtcgatgtgtgagtg |
9897953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 11815850 - 11815790
Alignment:
| Q |
9 |
ttcttaaattattattggtgtcgacgtgtgagtgttgtgtctgatgtctgtgtcggtgctt |
69 |
Q |
| |
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|||| ||||||||||||||||| |||||| ||||| |||||| || |||||||| |||||| |
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| T |
11815850 |
ttctcaaattattattggtgtcaacgtgtcagtgtcgtgtctaatatctgtgtccgtgctt |
11815790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 13338685 - 13338725
Alignment:
| Q |
9 |
ttcttaaattattattggtgtcgacgtgtgagtgttgtgtc |
49 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||||||| |
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| T |
13338685 |
ttcttaaattattactggtgtcgacgtgttagtgttgtgtc |
13338725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 29072510 - 29072556
Alignment:
| Q |
14 |
aaattattattggtgtcgacgtgtgagtgttgtgtctgatgtctgtg |
60 |
Q |
| |
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|||||||||| ||||||||||||||||||| ||||| | |||||||| |
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| T |
29072510 |
aaattattatcggtgtcgacgtgtgagtgtcgtgtccggtgtctgtg |
29072556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 3963524 - 3963564
Alignment:
| Q |
3 |
ttcatattcttaaattattattggtgtcgacgtgtgagtgt |
43 |
Q |
| |
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||||| |||||||||||||||||||||| |||||||||||| |
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| T |
3963524 |
ttcattttcttaaattattattggtgtctacgtgtgagtgt |
3963564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4937621 - 4937567
Alignment:
| Q |
1 |
aattcatattcttaaattattattggtgtcgacgtgtgagtgttgtgtctgatgt |
55 |
Q |
| |
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||||||| | || ||||||||||| |||||| ||||||||||| ||||||||||| |
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|
| T |
4937621 |
aattcatttgctcaaattattatttgtgtcggcgtgtgagtgtcgtgtctgatgt |
4937567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 4953317 - 4953276
Alignment:
| Q |
14 |
aaattattattggtgtcgacgtgtgagtgttgtgtctgatgt |
55 |
Q |
| |
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||||||||||| |||||| ||||||||||| ||||||||||| |
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| T |
4953317 |
aaattattatttgtgtcggcgtgtgagtgtcgtgtctgatgt |
4953276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 6424233 - 6424299
Alignment:
| Q |
1 |
aattcatattcttaaattattattggtgtcgacgtgtgagtgttgtgtctgatgtctgtgtcggtgc |
67 |
Q |
| |
|
||||||| || |||| ||||||||||| |||| ||| |||||||||||| ||||||||||||||| |
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|
| T |
6424233 |
aattcatctttttaagttattattggtatcgatgtggcagtgttgtgtctagtgtctgtgtcggtgc |
6424299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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