View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13217_high_22 (Length: 246)
Name: NF13217_high_22
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 21836975 - 21837201
Alignment:
| Q |
6 |
attaaaaagggactgatgaaactgtctaataaattggtcaagccatagtcgctgaattcatttcatgcccaatggaatatatatcgaaatgcaatatata |
105 |
Q |
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| T |
21836975 |
attaaaaaggaactgatgaaactgtctaataaattggtcaagccatagtcgctgaattcatttcatgcccaatggaatatatatcgaaatgcaatatata |
21837074 |
T |
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| Q |
106 |
cattgcataacaaatccacggtcaatttgaacac--aagaaaagaagaaactcagaatatttatatcgaaatagtgtctactattacatcctagacacta |
203 |
Q |
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| T |
21837075 |
cattgcataacaaatccatggtcaatttgaacacaaaagaaaagaagaaactcagaatatttatatcgaaatagtgtctactattacattctagacacta |
21837174 |
T |
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| Q |
204 |
ctattttgtttaatacgtatagatgatg |
231 |
Q |
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||| ||||||||||||||||| |||||| |
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| T |
21837175 |
cta-tttgtttaatacgtatatatgatg |
21837201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 15265002 - 15264956
Alignment:
| Q |
37 |
aattggtcaagccatagtcgctgaattcatttcatgcccaatggaat |
83 |
Q |
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| T |
15265002 |
aattggtcaagtcatagtcactgaattcatttcatacccaatggaat |
15264956 |
T |
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