View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13217_high_24 (Length: 237)
Name: NF13217_high_24
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8194806 - 8195031
Alignment:
| Q |
1 |
ttccccccaacacatttgaatctcatgcattaatgccaaaatttcggcgtgaagaatattcaagtagccaatatt----tgaaaaccacgcatgaattgt |
96 |
Q |
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|||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| ||| ||||||| |
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| T |
8194806 |
ttcctcccaacatatttgaatcccatgcattaatgccaaaatttcggcgtgaagaatattcgagtagccaatattaccgttaaaaccatgcaggaattgt |
8194905 |
T |
|
| Q |
97 |
ctatcag--tctctaattaagccaccaaatcctgccatccgtgggttggtttgagcactaccatccacattaagaatatatgatccaaaataacctctat |
194 |
Q |
| |
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| ||||| | |||||||||||||||||||| |||||||| || || |||| |||||||||||||||||||||| |||||| |||| ||| |||| ||| |
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| T |
8194906 |
ccatcagagtttctaattaagccaccaaatcttgccatccctgaatttgtttaagcactaccatccacattaagagtatatgctccagaatgacctttat |
8195005 |
T |
|
| Q |
195 |
gccaagaaataagatgaggctgaata |
220 |
Q |
| |
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||||||||||||| |||||||||||| |
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| T |
8195006 |
gccaagaaataagttgaggctgaata |
8195031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 219
Target Start/End: Original strand, 52666321 - 52666540
Alignment:
| Q |
6 |
cccaacacatttgaatctcatgcattaatgccaaaatttcggcgtgaagaatattcaagtagccaatatt----tgaaaaccacgcatgaattgtctatc |
101 |
Q |
| |
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||||||| ||||||||| |||||||||||||||| |||||||| |||| |||| ||||||||||||| ||||| |||| ||| ||||||| ||| |
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| T |
52666321 |
cccaacaaatttgaatcgcatgcattaatgccaagatttcggcatgaatggtatttgagtagccaatattaccatgaaagccacacataaattgtccatc |
52666420 |
T |
|
| Q |
102 |
--agtctctaattaagccaccaaatcctgccatccgtgggttggtttgagcactaccatccacattaagaatatatgatccaaaataacctctatgccaa |
199 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||| |||||||||||| || || |||||| |||||| |
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| T |
52666421 |
gaagtctctaattaagccaccaaatcctctcatccccgggttggtttgagaactatcatccacataaagaatatatgagtcaggatgacctctttgccaa |
52666520 |
T |
|
| Q |
200 |
gaaataagatgaggctgaat |
219 |
Q |
| |
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||||||| ||||||||||| |
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| T |
52666521 |
aaaataagttgaggctgaat |
52666540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 48543765 - 48543589
Alignment:
| Q |
6 |
cccaacacatttgaatctcatgcattaatgccaaaatttcggcgtgaagaatattcaagtagccaatatttgaa---aaccacgcatgaattgtctatc- |
101 |
Q |
| |
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||||||| ||||||||| |||||||||||| ||| |||||||| ||||||||||| | ||||||||||| | | |||||||| ||||||| ||| |
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| T |
48543765 |
cccaacaaatttgaatcccatgcattaatgtcaagatttcggcatgaagaatatttgaatagccaatattaccatggagccacgcataaattgtccatcg |
48543666 |
T |
|
| Q |
102 |
-agtctctaattaagccaccaaatcctgccatccgtgggttggtttgagcactaccatccacattaagaatatatga |
177 |
Q |
| |
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| T |
48543665 |
aagtctctaattaagccactgaatcctgtcatccccgggttggtttgagcactaccatccacattaagaatatatga |
48543589 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 14624429 - 14624504
Alignment:
| Q |
102 |
agtctctaattaagccaccaaatcctgccatccgtgggttggtttgagcactaccatccacattaagaatatatga |
177 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
14624429 |
agtctctaactaagccaccagatcctgccatctccaggttggtttgagcactaccatccacattaaaaatatatga |
14624504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 1808131 - 1808062
Alignment:
| Q |
6 |
cccaacacatttgaatctcatgcattaatgccaaaatttcggcgtgaagaatattcaagtagccaatatt |
75 |
Q |
| |
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||||||| ||||||||| ||| ||||| |||||| |||||||| ||||||||||| ||||| ||||||| |
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|
| T |
1808131 |
cccaacaaatttgaatcccatacattattgccaagatttcggcatgaagaatatttgagtagtcaatatt |
1808062 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 34445084 - 34445007
Alignment:
| Q |
143 |
gtttgagcactaccatccacattaagaatatatgatccaaaataacctctatgccaagaaataagatgaggctgaata |
220 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||| ||| |||||||| ||||||||||| ||||| |||||| |
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| T |
34445084 |
gtttgagcactaccatccacattaaaaatatatgagccataatgacctctattccaagaaataaactgaggttgaata |
34445007 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 34446179 - 34446031
Alignment:
| Q |
9 |
aacacatttgaatctcatgcattaatgccaaaatttcggcgtgaagaatattcaagtagccaatat----ttgaaaaccacgcatgaattgtctat--ca |
102 |
Q |
| |
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|||| ||||||||| |||||||||||| ||| |||||| |||||| |||||||| ||||||||||| ||| |||||| ||||||||||| || | |
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| T |
34446179 |
aacaaatttgaatcccatgcattaatgtcaagatttcgacgtgaaaaatattcatgtagccaatattaccttggaaaccatgcatgaattgttcatgaaa |
34446080 |
T |
|
| Q |
103 |
gtctctaattaagccaccaaatcctgccatccgtgggttggtttgagca |
151 |
Q |
| |
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|||| |||||| || | ||||| ||| |||||||| ||||||||||||| |
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|
| T |
34446079 |
gtctttaattatgcaatcaaattctgtcatccgtgagttggtttgagca |
34446031 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 19246194 - 19246013
Alignment:
| Q |
7 |
ccaacacatttgaatctcatgcattaatgccaaaatttcggcgtgaagaatattcaagtagccaatatttgaa---aaccacgcatgaattgtctatc-- |
101 |
Q |
| |
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|||||| ||||||||||| ||||| || ||||||| | || ||||||||||||||||| |||||||| | || | |||||||||| || || |
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| T |
19246194 |
ccaacaaatttgaatctcgtgcatcaaagccaaaactgttgcatgaagaatattcaagtaaccaatattaccacagaaacgcgcatgaattctccattga |
19246095 |
T |
|
| Q |
102 |
agtctctaattaagccaccaaatcctgccatccgtgggttggtttgagcactaccatccacattaagaatatatgatccaaa |
183 |
Q |
| |
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|||||||||||||||||||||| |||||||| | |||| ||||||||| | ||||||| ||||||||||| || ||||| |
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| T |
19246094 |
agtctctaattaagccaccaaaatctgccatctctaggttagtttgagcattgtcatccacgttaagaatatacgaaccaaa |
19246013 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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