View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13217_high_3 (Length: 508)
Name: NF13217_high_3
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 20 - 508
Target Start/End: Original strand, 42182993 - 42183481
Alignment:
| Q |
20 |
ggttatggtcccacaacatacaacatgtcttttgggggtgattcttctgctctaggtgctaatgctatcattgataatggcggtgtatccttaaattttc |
119 |
Q |
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| T |
42182993 |
ggttatggtcccacaacatacaacatgtcttttgggggtgattcttctgctctaggtgctaatgctatcattgataatggtggtgtatccttaaattttc |
42183092 |
T |
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| Q |
120 |
aaccttttcacaacatttctgcctccaacacaaccctcaaaggttaatttgtgtttatttcttattgttttccatcaatcaataatatatagaaaaataa |
219 |
Q |
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| T |
42183093 |
aaccttttcacaacatttctgcctccaacacaaccctcaaaggttaatttgtgtttatttcttattgttttccatcaatcaataatatatagaaacataa |
42183192 |
T |
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| Q |
220 |
gtagtgatcagaacnnnnnnngttctgtacaagtttctgaagtctgaacatacttgtgtttgttgttgtcacagcaggtggaatggcggcttcaatagga |
319 |
Q |
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| T |
42183193 |
gtagtggtcagaacaaaaaaagttctgtacaagtttctgaagtctgaacatacttgtgtttgtggttgtcacagcaggtggaatggcggcttcaatagga |
42183292 |
T |
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| Q |
320 |
atagggtatcctcctttcacaagtgctcaatggagagagcttgaaagacaagctatgatttacaagtacttgatggcttcacttcctgttccttctcatc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42183293 |
atagggtatcctcctttcacaagtgctcaatggagagagcttgaaagacaagctatgatttacaagtacttgatggcttcacttcctgttccttctcatc |
42183392 |
T |
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| Q |
420 |
ttctttcatgtatggcccttttctctcttcttccttaatttcatattttgatgtacagacaaagaaaatatcatagcccattaactttt |
508 |
Q |
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| T |
42183393 |
ttctttcatgtatggcccttttctctcttcttccttaatttcatattttgatgtacagacaaagaaaataacatagcccattaactttt |
42183481 |
T |
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