View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13217_low_1 (Length: 1335)
Name: NF13217_low_1
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_low_1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 780 - 1326
Target Start/End: Complemental strand, 50457010 - 50456482
Alignment:
| Q |
780 |
acagttttgttattgaaatggtactgtttaacagcataataaaatcactcaaatttcgttactttagttgtaacatgtatagctttagcttatgttatct |
879 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50457010 |
acagttttgttattgaaatggtactgtttaacagcataataaa-tcactcaaatttcgttactttagttgtaacatgtatagctttagcttatgttatct |
50456912 |
T |
|
| Q |
880 |
tagttttttctctctcttatctttgacctcttatagaattatggaactactcgtagctaagtacagaaaaataaattctcatttaaattccagtcggcac |
979 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50456911 |
tagttttttttttctcttatctttgacctcttatagaattatgcaactactcgtagctaagtacagaaaaataaattctcatttaaattccaatcggcac |
50456812 |
T |
|
| Q |
980 |
ccaccacgatgattccactactatctttcatttcttaacttttcttaaccaagtaactgggctaagtggttaatcagctccaacaaaagacaaaatattc |
1079 |
Q |
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| T |
50456811 |
ccaccacgatgattccactactatctttcatttct----------taaccaagtaactgggctaagtggttaatcagctccaacaaaagacaaaatattc |
50456722 |
T |
|
| Q |
1080 |
gattagagaaccccttccggaagattaacgcaaagaaattgaaatactaatcaaaggatgaagaagaaacagaaaacataccgagatttgaacgggaaga |
1179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50456721 |
gattagagaaccccttccggaagattaacgcaaagaaattgaaatactaatcaaaggatgaagaagaaacagaaaacataccgagatttgaacgggaaga |
50456622 |
T |
|
| Q |
1180 |
tgtagaatgagagattgagatcgctggggctgagcggagagtttgtaatttgtaatttgtattcaatcagaagcagaataagcggagagacgaaatcgaa |
1279 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50456621 |
tgtagaatgagagattgagatcgctggggctgagcagagag-------tttgtaatttgtattcaatcagaagcagaataagcggagagacgaaatcgaa |
50456529 |
T |
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| Q |
1280 |
gtatatatagtaggcgtgcaaatgagataaatgatctatgatgatgt |
1326 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
50456528 |
gtatatatagtaggcgtgcaaatgagacaaatgatctacgatgatgt |
50456482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 327 - 758
Target Start/End: Complemental strand, 50457438 - 50457007
Alignment:
| Q |
327 |
ttaaagggcaaatagtcatttccattcttaaatcggtaaagaatagccacaatgatcctccaatgtagcaaaattacaaaatagtaactgctcgtgcact |
426 |
Q |
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| T |
50457438 |
ttaaagggcaaatagtcatttccattcttaaatcggtaaagaatagccacaatgatcctccaatgtagcaaaattacaaaatagtaactgctcgtgcact |
50457339 |
T |
|
| Q |
427 |
ccattaatcaaaataatctatgacaagaacaaatgctattatttctgttcaagaaatgcttacatcaatcatgcctattccccattttaaccctctgtat |
526 |
Q |
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|||||| ||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
50457338 |
ccattagtcaaaataatctatggcgagaacaaatgctattatttctgatcaagaaatgcttacatcaatcatgcctattccccgttttaaccctccgtat |
50457239 |
T |
|
| Q |
527 |
gttaactcaccacactttaggtcatggcattaaaggaaacattttaacatcaaatactattttgactaaagagtgtacaatcatgactattttataattt |
626 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50457238 |
gttaactcaccacactttaggtcatggcgttaaaggaaacattttaacatcaaatactattttgactaaagagtgtacaatcatgactattttataattt |
50457139 |
T |
|
| Q |
627 |
cgctacatcgaggacaattgtgactactcgttacgcattcaggaacaaacatgactatttgcctcaaaattaatagcatactaaatgcagacaataataa |
726 |
Q |
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| T |
50457138 |
cgctacatcgaggacaattgtgactactcgttacgcattcaggaacaaaaatgactatttgcctcaaaattaatagcatactaaatgcagacaataataa |
50457039 |
T |
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| Q |
727 |
caatatggaataacaatcaagtaatagtacag |
758 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
50457038 |
caatatggaataacaatcaagtaatagtacag |
50457007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 121 - 262
Target Start/End: Complemental strand, 50457669 - 50457528
Alignment:
| Q |
121 |
ggaagacaggaaaattgtcatttcaaacaagatatatcaaaacatattcccaagctaattgatctgttttgatttcctgtatcttcatctagggcattaa |
220 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50457669 |
ggaagacaggaaaattatcatttcaaacaagatatatcacaacatattcccaagctaattgatttgttttgatttcctgtatcttcatctagggcattaa |
50457570 |
T |
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| Q |
221 |
atttgaaattactccacataagagactcaatatgtccaactg |
262 |
Q |
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|||||||||||||| || |||||||| ||||||||||||||| |
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| T |
50457569 |
atttgaaattactctacttaagagacccaatatgtccaactg |
50457528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 549 - 600
Target Start/End: Complemental strand, 40243175 - 40243124
Alignment:
| Q |
549 |
catggcattaaaggaaacattttaacatcaaatactattttgactaaagagt |
600 |
Q |
| |
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|||| ||||||||||||||||||||||| ||| |||||||||| ||| |||| |
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| T |
40243175 |
catgacattaaaggaaacattttaacattaaagactattttgattaacgagt |
40243124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 549 - 594
Target Start/End: Complemental strand, 3859947 - 3859902
Alignment:
| Q |
549 |
catggcattaaaggaaacattttaacatcaaatactattttgacta |
594 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
3859947 |
catggcgttaaaggaaacattttaacgtcaaatactattttgacta |
3859902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 570 - 685
Target Start/End: Original strand, 515979 - 516097
Alignment:
| Q |
570 |
ttaacatcaaatactattttgactaaaga-gtgtacaatcat-gactattttataatttcgctacatcgagg-acaattgtgactactcgttacgcattc |
666 |
Q |
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||||||||| | |||||||||||||| || ||| |||||||| ||||||||| ||||||| |||||| || || ||||||||||||||||| ||||| |
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| T |
515979 |
ttaacatcagagactattttgactaacgaagtgcacaatcattgactattttggaatttcgatacatcaagttactgttgtgactactcgttacacattc |
516078 |
T |
|
| Q |
667 |
aggaacaaacatgactatt |
685 |
Q |
| |
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||| || || ||||||||| |
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| T |
516079 |
agggaccaaaatgactatt |
516097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 563 - 609
Target Start/End: Original strand, 37555 - 37600
Alignment:
| Q |
563 |
aaacattttaacatcaaatactattttgactaaagagtgtacaatca |
609 |
Q |
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| T |
37555 |
aaacattttaacatcaaatactatttttactaaa-agtgaacaatca |
37600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 40355364 - 40355314
Alignment:
| Q |
545 |
aggtcatggcattaaaggaaacattttaacatcaaatactattttgactaa |
595 |
Q |
| |
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|||||||||| ||||||||||||||||||| ||| | |||||||| ||||| |
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|
| T |
40355364 |
aggtcatggcgttaaaggaaacattttaacgtcagagactattttaactaa |
40355314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 562 - 595
Target Start/End: Complemental strand, 2987006 - 2986973
Alignment:
| Q |
562 |
gaaacattttaacatcaaatactattttgactaa |
595 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |
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| T |
2987006 |
gaaacattttaacattaaatactattttgactaa |
2986973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 598 - 685
Target Start/End: Original strand, 917174 - 917263
Alignment:
| Q |
598 |
agtgtacaatcat-gactattttataatttcgctacatcgagg-acaattgtgactactcgttacgcattcaggaacaaacatgactatt |
685 |
Q |
| |
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|||||||||||| |||||||||| ||||||| ||||| |||| || |||||||||| | |||| ||||||||||| || ||||||||| |
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| T |
917174 |
agtgtacaatcaaagactattttaaaatttcgatacattgagggacgattgtgactaatatttacacattcaggaaccaaaatgactatt |
917263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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