View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13217_low_10 (Length: 386)
Name: NF13217_low_10
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 16564938 - 16565307
Alignment:
| Q |
19 |
aaaatgattgatttaatagagaaattatagtatagttaattatgaatattttaagaagaataccacaaaaatacttnnnnnnntgtacataaataaatta |
118 |
Q |
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| T |
16564938 |
aaaatgattgatttaatagaaaaattatagtatagttaattatgaatattttaagaagaataccacaaaaatagttaaaaaaatgtacataaaaaaatta |
16565037 |
T |
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| Q |
119 |
tgtcattgcaataatataagtcatatttaactacagttctgtgcaatat---------atcatgcaccaatatgacaaactaagatcaaattcgttgtca |
209 |
Q |
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| T |
16565038 |
tgtcattgcaataatataagtcatatttaactacagttttgtgcaatatatatcatatatcatgcaccaatatgacaaactaagatcaaattcgttgtca |
16565137 |
T |
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| Q |
210 |
taattgtttttataagctttttacccttaaaagactccatttccactctgagtgccatcattgcagttgcattggtgggcatgcatgggttgctttaagc |
309 |
Q |
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| T |
16565138 |
taattgtttttataagctttttacccttaaaagactccatttccactctcagtgccatcattgcagttgcattggtgggcatgcatgggttgctttaagc |
16565237 |
T |
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| Q |
310 |
ctttaatatcgactttaattgtttaataaagtacnnnnnnngctaggaatgatggaatgtccctttgctt |
379 |
Q |
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| T |
16565238 |
ctttaatatcgactttaattgtttaataaagtactttttttgctaggaatgatggaatgtccctttgctt |
16565307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 52822457 - 52822524
Alignment:
| Q |
238 |
aaaagactccatttccactctgagtgccatcattgcagttgcattggtgggcatgcatgggttgcttt |
305 |
Q |
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| T |
52822457 |
aaaagactccacttccactcttagtgtcattattgcagctgagttggtggggatgcataggttgcttt |
52822524 |
T |
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