View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13217_low_19 (Length: 263)
Name: NF13217_low_19
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 4634674 - 4634442
Alignment:
| Q |
16 |
ataataaattacagggaatagtttgtcttggcttggttgattaggatatgaaacttggttgccatatatattgnnnnnnnnnnaaatgtgcgtgagtcct |
115 |
Q |
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| T |
4634674 |
ataataaattacagggaatagtttgtcttggcttggttgattaggatatgaaacttggttgccatatatattggtttttttt-aaatgtgtgtgagtcct |
4634576 |
T |
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| Q |
116 |
atatgttgaggtgtgttgatgaaggaagaaatcaaaagtatactgtgagaattagagttgggtttgaatatgcttcagttcagtttatgataaaaatggg |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4634575 |
atatgttgaggtgtgttgatgacggaagaaatcaaaagtatactgtgagaattagagttgggtttgaatatgcttcagttcagtttatgataaaaatggg |
4634476 |
T |
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| Q |
216 |
tttatgaaatacactattgataatagttcaatgt |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4634475 |
tttatgaaatacactattgataatagttcaatgt |
4634442 |
T |
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Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 21838167 - 21838357
Alignment:
| Q |
16 |
ataataaattacagggaatagtttgtcttggcttggttgattaggatatgaaacttggttgccatatatattgnnnnnnnnnn-aaatgtgcgtgagtcc |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |
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| T |
21838167 |
ataataaattacagggcatagtttgtcttggcttggttgattaggatatgaaacttggttgccttatatattggttttttttttaaatgtgtgtgagtcc |
21838266 |
T |
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| Q |
115 |
tatatgttgaggtgtgttgatgaaggaagaaatcaaaagtatactgtgagaattagagttgggtttgaatatgcttcagttcagtttatga |
205 |
Q |
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| T |
21838267 |
tatatgttgaggtgtgttgatgaaggaagaaatcaaaagtatattgtgagaattagagttgggtttgaatatgctttagttgagtttatga |
21838357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 17732934 - 17732998
Alignment:
| Q |
21 |
aaattacagggaatagtttgtcttggcttggttgattaggatatgaaacttggttgccatatata |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |
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| T |
17732934 |
aaattacagggaatagtttgtcttggcttggttgattaggatataaaacttgggtgccttatata |
17732998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 7762124 - 7762169
Alignment:
| Q |
18 |
aataaattacagggaatagtttgtcttggcttggttgattaggata |
63 |
Q |
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|||| |||| || ||||||||||||||||||||| ||||||||||| |
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| T |
7762124 |
aatatattatagagaatagtttgtcttggcttggctgattaggata |
7762169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 22761989 - 22761944
Alignment:
| Q |
18 |
aataaattacagggaatagtttgtcttggcttggttgattaggata |
63 |
Q |
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||||||||| |||||||| ||||||||||||||| || |||||||| |
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| T |
22761989 |
aataaattatagggaatattttgtcttggcttggctgtttaggata |
22761944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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