View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13217_low_2 (Length: 745)

Name: NF13217_low_2
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13217_low_2
NF13217_low_2
[»] chr4 (15 HSPs)
chr4 (293-745)||(54300451-54300908)
chr4 (1-296)||(54300129-54300424)
chr4 (1-289)||(54287551-54287835)
chr4 (409-582)||(13570504-13570677)
chr4 (409-559)||(40975587-40975739)
chr4 (409-526)||(52182138-52182254)
chr4 (406-591)||(23542472-23542658)
chr4 (144-259)||(54306438-54306559)
chr4 (6-66)||(54306287-54306346)
chr4 (430-591)||(49358596-49358760)
chr4 (317-403)||(54287890-54287976)
chr4 (701-745)||(40975903-40975947)
chr4 (452-568)||(37355326-37355443)
chr4 (452-568)||(37367300-37367417)
chr4 (452-498)||(41374184-41374230)
[»] scaffold1487 (2 HSPs)
scaffold1487 (410-559)||(1044-1195)
scaffold1487 (685-745)||(1344-1404)
[»] chr3 (3 HSPs)
chr3 (409-559)||(27902089-27902241)
chr3 (452-591)||(20649895-20650035)
chr3 (452-568)||(6037397-6037514)
[»] chr1 (6 HSPs)
chr1 (408-559)||(9317041-9317194)
chr1 (452-686)||(11912160-11912400)
chr1 (685-745)||(9316843-9316903)
chr1 (409-559)||(21818594-21818745)
chr1 (508-673)||(23252382-23252557)
chr1 (508-668)||(44917453-44917619)
[»] chr7 (3 HSPs)
chr7 (409-526)||(43365407-43365524)
chr7 (409-582)||(9704237-9704410)
chr7 (685-745)||(43365154-43365214)
[»] chr5 (7 HSPs)
chr5 (409-559)||(9334137-9334289)
chr5 (516-687)||(12504802-12504978)
chr5 (685-745)||(9334427-9334487)
chr5 (406-559)||(20900438-20900591)
chr5 (409-489)||(37336431-37336511)
chr5 (620-688)||(12504972-12505039)
chr5 (471-591)||(30579191-30579314)
[»] chr6 (3 HSPs)
chr6 (429-559)||(18766792-18766924)
chr6 (685-745)||(18766594-18766654)
chr6 (471-530)||(9847683-9847742)
[»] scaffold0265 (1 HSPs)
scaffold0265 (409-559)||(14064-14215)
[»] chr8 (3 HSPs)
chr8 (452-558)||(4973016-4973123)
chr8 (452-568)||(11357202-11357319)
chr8 (452-498)||(36020726-36020772)
[»] chr2 (1 HSPs)
chr2 (410-482)||(22196895-22196967)
[»] scaffold0510 (1 HSPs)
scaffold0510 (452-498)||(2210-2256)


Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 293 - 745
Target Start/End: Original strand, 54300451 - 54300908
Alignment:
Q  293 caatggcgaaggatcaacgtctcattttcaaaacatgggatctgctcattcatccctgtcaccatcgtttaggattgagcgaggtgatccttctgccagt 392  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54300451 caatggcgaaggatcaacatctcattttcaaaacatgggatctgctcattcatccctgtcaccatcgtttaggattgagccaggtgatccttctgccagt 54300550  T
Q  393 accttagatagcgcgctgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagct 492  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  54300551 accttagatagcacgctgataagtgccagaaagtagttaattccatgttacaattaaggcacttttgttacttgtcttacaagttatttagggaaaagct 54300650  T
Q  493 gagaaaaagatggacaattgccctattacgctt--tatatctttctatacccctttgtacaggaattgacctcaagacgcgaaacaaagaagaaaatc-- 588  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||||| |||||  |||||||||||||||||| | ||||||||||||||| |      
T  54300651 gagaaaaagatggacaattgccctattacgctttatatatcttactatacccttttgtgtaggaattgacctcaagacactaaacaaagaagaaaaacaa 54300750  T
Q  589 -aaaaaggacaaaaggacataggcatcaattaactctcctccaactcgcaacggcgagtgctgaaaagcgagtagaggcaggaagacctatttactcgcc 687  Q
     |||||| |||||| | || | ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54300751 gaaaaagtacaaaaaggcagaagcatcaattcactcgcctccaacttgcaacggcgagtgctgaaaagcgagtagaggcaggaagacctatttactcgcc 54300850  T
Q  688 atggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgag 745  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  54300851 atggcaagttgaaggcgagctaacttgccatgatgagaaaaattactcgcgaggcgag 54300908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 54300129 - 54300424
Alignment:
Q  1 cctgctgctggttgtatcattaatttagcttgcttattttgattatcaagtttctaggtgaatgaatgcatgcacacttttaatgtttttatgtttatgt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54300129 cctgctgctggctgtatcattaatttagcttgcttattttgattatcaagtttctaggtgaatgaatgcatgcacacttttaatgtttttatgtttatgt 54300228  T
Q  101 cctattccatcttctgatcttgtaatttgtagctaggcggcattttttgcaatttgaacaaggatatttaatcaagcattttgaacagctcgtccagtat 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54300229 cctattccatcttctgatcttgtaatttgtagctaggtggcattttttgaaatttgaacaaggatatttaatcaagcattttgaacagctcgtccagtat 54300328  T
Q  201 agcgaacatcttaagttcttaagcgaacagccagatataatgttggattctcctcattttgatacacgatctgctgcttctgagaacccagacaat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54300329 agcgaacatcttaagttcttaagcgaacagccagatataatgttggattctcctcattttgatacacgatccgctgcttctgagaacccagacaat 54300424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 54287551 - 54287835
Alignment:
Q  1 cctgctgctggttgtatcattaatttagcttgcttattttgattatcaagtttctaggtgaatgaatgcatgcacacttttaatgtttttatgttt-atg 99  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||  |||| |||| |||  ||||||| |||| ||| ||| ||| |||    
T  54287551 cctgctgctggttgtatcattaatt-agcttgcttattgtgattatcaagtttcttagtgattgaaagcagacacacttctaatatttgtatattttatg 54287649  T
Q  100 tcctattccatcttctgatcttgtaatttgtagctaggcggcattttttgcaatttgaacaaggatatttaatcaagcattttgaacagctcgtccagta 199  Q
    |||| ||||||||| |||| || ||| ||    ||||||||||| ||||||||| ||||||||||   || |||||||||| |||| ||||||||||||     
T  54287650 tcctgttccatcttgtgattttataactt----ctaggcggcatgttttgcaatgtgaacaaggactgttgatcaagcattatgaaaagctcgtccagtg 54287745  T
Q  200 tagcgaacatcttaagttcttaagcgaacagccagatataatgttggattctcctcattttgatacacgatctgctgcttctgagaaccc 289  Q
    || ||| | |||||||||||||||| |||||||||| |||||| | ||||| |||||||||||| ||||||| ||||||  |||||||||    
T  54287746 taacgatcgtcttaagttcttaagccaacagccagagataatggttgattcacctcattttgatccacgatccgctgctattgagaaccc 54287835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 409 - 582
Target Start/End: Complemental strand, 13570677 - 13570504
Alignment:
Q  409 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 508  Q
    |||||||| |||||||| |||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||| ||      
T  13570677 tgataagttccagaaagtagttaatttcatgttacatttaaggcacttttgttacttgtcttacaagttatttaggaaaaagccgagaaaaagat-gatt 13570579  T
Q  509 attgccctattacgcttta--tatctttctatacccctttgtacaggaattgacctcaagacgcgaaacaaagaag 582  Q
    |||||||||||||||||||  || ||| || ||||| ||||| || ||||||| || ||||| | |||||||||||    
T  13570578 attgccctattacgctttatttaccttactctacccatttgtgca-gaattgaacttaagacaccaaacaaagaag 13570504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 409 - 559
Target Start/End: Original strand, 40975587 - 40975739
Alignment:
Q  409 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 508  Q
    ||||||||||||||||| |||||||| ||||||||||||||  |||||||||||||| ||||||||||||||||||||||| |  ||||||||||| |||    
T  40975587 tgataagtgccagaaagtagttaattacatgttacaattaaagcacttttgttacttgtcttacaagttatttagggaaaatccaagaaaaagatgaaca 40975686  T
Q  509 attgccctattacgc--tttatatctttctatacccctttgtacaggaattga 559  Q
    |||  | |||||| |  |||||||||| || || || ||||| ||||||||||    
T  40975687 attttcttattacactttttatatcttactctatccatttgtgcaggaattga 40975739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 409 - 526
Target Start/End: Original strand, 52182138 - 52182254
Alignment:
Q  409 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 508  Q
    ||||||||||||||||| |||||||  ||  ||||| ||||| |||||||||||||| ||||||||||||||||||||||||  ||||||||| || | |    
T  52182138 tgataagtgccagaaagtagttaatatcactttacatttaaggcacttttgttacttgtcttacaagttatttagggaaaagtcgagaaaaag-tgaata 52182236  T
Q  509 attgccctattacgcttt 526  Q
    ||||||||||||||||||    
T  52182237 attgccctattacgcttt 52182254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 406 - 591
Target Start/End: Original strand, 23542472 - 23542658
Alignment:
Q  406 cgctgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatgg 505  Q
    ||||||||||||| |||||| ||||||||||||||| || ||||||||||| |||||||| | | ||||||||| ||||||||||| |||| |||  ||     
T  23542472 cgctgataagtgcgagaaagtagttaattccatgtttcatttaagacacttctgttacttgtttcacaagttatctagggaaaagccgagagaaaagtg- 23542570  T
Q  506 acaattgccctattacgctttat--atctttctatacccctttgtacaggaattgacctcaagacgcgaaacaaagaagaaaatcaaa 591  Q
    | ||||||||||||||||||| |  ||||| || || |  ||||| || ||||||| |||||||| | ||||||||||| ||| ||||    
T  23542571 ataattgccctattacgctttctttatcttactctatcaatttgtgcaagaattgaactcaagacaccaaacaaagaagtaaaacaaa 23542658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 144 - 259
Target Start/End: Original strand, 54306438 - 54306559
Alignment:
Q  144 tttttgcaatttgaacaaggatatttaatcaagcattttgaacagctcgtccagt---atagcgaacatcttaagttcttaagc---gaacagccagata 237  Q
    |||||||| | |||||||||| |||||||||||||||||||||||||| ||||||    |||| ||| ||||||||||||||||    |||| ||||| |    
T  54306438 tttttgcagtgtgaacaaggacatttaatcaagcattttgaacagctcatccagtgtagtagcaaacgtcttaagttcttaagccaacaacaaccagaga 54306537  T
Q  238 taatgttggattctcctcattt 259  Q
    ||||||||||||| ||||||||    
T  54306538 taatgttggattcacctcattt 54306559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 54306287 - 54306346
Alignment:
Q  6 tgctggttgtatcattaatttagcttgcttattttgattatcaagtttctaggtgaatgaa 66  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  54306287 tgctggttgtatcattaatt-agattgcttattttgattatcaagtttctaggtgaatgaa 54306346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 430 - 591
Target Start/End: Original strand, 49358596 - 49358760
Alignment:
Q  430 taattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgc--ttta 527  Q
    |||||| |||||||| ||||| ||||||||||| || |||||||||||||||||| ||||||  ||| |||  || | ||||| ||||||||||  ||||    
T  49358596 taattcaatgttacatttaaggcacttttgttatttgtcttacaagttatttaggaaaaagccaagagaaaagtgaataattgtcctattacgcttttta 49358695  T
Q  528 tatctttctatacccctttgtacaggaattg-acctcaagacgcgaaacaaagaagaaaatcaaa 591  Q
    |||||| || || || |||||  |||||||| |  ||||||| | || |||||||||||| ||||    
T  49358696 tatcttactctatccatttgtgtaggaattgaatatcaagacaccaagcaaagaagaaaaacaaa 49358760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 403
Target Start/End: Original strand, 54287890 - 54287976
Alignment:
Q  317 ttttcaaaacatgggatctgctcattcatccctgtcaccatcgtttaggattgagcgaggtgatccttctgccagtaccttagatag 403  Q
    |||||| |||||||||||| |||||||||| ||||||||||| |||| || |||||   | ||||||||||| | ||||||||||||    
T  54287890 ttttcagaacatgggatctcctcattcatctctgtcaccatcatttacgactgagcacagcgatccttctgctattaccttagatag 54287976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 701 - 745
Target Start/End: Original strand, 40975903 - 40975947
Alignment:
Q  701 ggcgagctaacttgccatgatgagcaaaattactcgcgaggcgag 745  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||    
T  40975903 ggcgagctaacttgccatggcgagtaaaattactcgcgaggcgag 40975947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 452 - 568
Target Start/End: Original strand, 37355326 - 37355443
Alignment:
Q  452 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatctttctatacccctttgta 549  Q
    |||||||||||||| | |||||||||||| |||||||||| |||||| | |  ||  |||||||| ||||||||||  |||||| ||  |||| |||||     
T  37355326 cacttttgttacttgttttacaagttattgagggaaaagccgagaaata-agtgattattgcccttttacgctttatctatcttacttcacccatttgtg 37355424  T
Q  550 caggaattgacctcaagac 568  Q
    ||||| |||| ||||||||    
T  37355425 caggatttgaactcaagac 37355443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 452 - 568
Target Start/End: Original strand, 37367300 - 37367417
Alignment:
Q  452 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatctttctatacccctttgta 549  Q
    |||||||||||||| | |||||||||||| |||||||||| |||||| | |  ||  |||||||| ||||||||||  |||||| ||  |||| |||||     
T  37367300 cacttttgttacttgttttacaagttattgagggaaaagccgagaaata-agtgattattgcccttttacgctttatctatcttacttcacccatttgtg 37367398  T
Q  550 caggaattgacctcaagac 568  Q
    ||||| |||| ||||||||    
T  37367399 caggatttgaactcaagac 37367417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 41374230 - 41374184
Alignment:
Q  452 cacttttgttacttatcttacaagttatttagggaaaagctgagaaa 498  Q
    |||||||||||||| | || ||||||||| |||||||||||||||||    
T  41374230 cacttttgttacttgttttgcaagttattaagggaaaagctgagaaa 41374184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1487 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 410 - 559
Target Start/End: Original strand, 1044 - 1195
Alignment:
Q  410 gataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaa 509  Q
    |||||||||||||||| |||||||| ||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||    
T  1044 gataagtgccagaaagtagttaattacatgttacaattaaagcacttttgttacttgtcttaaaagttatttagggaaaagccgagaaaaagatgaacaa 1143  T
Q  510 ttgccctattacgc--tttatatctttctatacccctttgtacaggaattga 559  Q
    ||||||||||||||  |||||||||| || || || ||||| ||||||||||    
T  1144 ttgccctattacgctttttatatcttactctatccatttgtgcaggaattga 1195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1487; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 685 - 745
Target Start/End: Original strand, 1344 - 1404
Alignment:
Q  685 gccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgag 745  Q
    |||||||| |||| | |||||||||||| ||||||  ||||||||||||||||||||||||    
T  1344 gccatggcgagttcatggcgagctaactagccatggcgagcaaaattactcgcgaggcgag 1404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 409 - 559
Target Start/End: Complemental strand, 27902241 - 27902089
Alignment:
Q  409 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 508  Q
    ||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||| |||||||||| | |||||||||||| |||||||||||| |||    
T  27902241 tgataagtgccagaaagtagttaatttcatgttacatttaaggcacttttgttacttgtcttacaagtaagttagggaaaagccgagaaaaagatgaaca 27902142  T
Q  509 attgccctattacgc--tttatatctttctatacccctttgtacaggaattga 559  Q
    ||||| |||||||||  |||||||||| || || || ||||| ||||||||||    
T  27902141 attgcgctattacgctttttatatcttactctatccatttgtgcaggaattga 27902089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 452 - 591
Target Start/End: Original strand, 20649895 - 20650035
Alignment:
Q  452 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatctttctatacccctttgta 549  Q
    |||||||||||||| | |||||||||||| ||||||||||||||| | | |  ||  |||||||| ||||||||||  |||||| || ||||| |||||     
T  20649895 cacttttgttacttgttttacaagttattgagggaaaagctgagagata-agtgattattgcccttttacgctttatctatcttactttacccatttgtg 20649993  T
Q  550 caggaattgacctcaagacgcgaaacaaagaagaaaatcaaa 591  Q
    || ||||||| |||||||| | || |||||||||||| ||||    
T  20649994 caagaattgaactcaagacactaagcaaagaagaaaaacaaa 20650035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 452 - 568
Target Start/End: Complemental strand, 6037514 - 6037397
Alignment:
Q  452 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatctttctatacccctttgta 549  Q
    |||||||||||||| | || ||||||||| ||||||||||||||||| | |  ||  |||||||| ||||||||||  |||||| ||  |||| |||||     
T  6037514 cacttttgttacttgttttgcaagttattaagggaaaagctgagaaata-agtgattattgcccttttacgctttatctatcttacttcacccatttgtg 6037416  T
Q  550 caggaattgacctcaagac 568  Q
    ||||| |||| ||||||||    
T  6037415 caggatttgaactcaagac 6037397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 408 - 559
Target Start/End: Complemental strand, 9317194 - 9317041
Alignment:
Q  408 ctgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggac 507  Q
    |||||||||||||||||| |||||||| ||||||||| ||||| || ||||||||||| |||||||||||| |||||||||||  |||||||||||| ||    
T  9317194 ctgataagtgccagaaagtagttaatttcatgttacatttaaggcagttttgttacttgtcttacaagttagttagggaaaagtcgagaaaaagatgaac 9317095  T
Q  508 aattgccctattacgc--tttatatctttctatacccctttgtacaggaattga 559  Q
    |||||||||| || ||  |||||||||| || || || ||||| ||||||||||    
T  9317094 aattgccctactatgctttttatatcttactctatccatttgtgcaggaattga 9317041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 452 - 686
Target Start/End: Original strand, 11912160 - 11912400
Alignment:
Q  452 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgctttatat--ctttctatacccctttgta 549  Q
    |||||||||||||| | || ||||||||| |||||||||| |||| | |  ||   |||||||||||||||||||||||  ||| || ||||| ||| |     
T  11912160 cacttttgttacttgttttgcaagttattgagggaaaagccgagagataagtgtt-aattgccctattacgctttatatatcttactctacccttttatg 11912258  T
Q  550 caggaattgacctcaagacgcgaaacaaagaagaaa---atcaaaaaggac-aaaaggacataggcatcaattaactctcctccaactcgcaacggcgag 645  Q
    |||||||| |||||||||| | ||||||||||||||   |  |||||| || |||| | || | ||||||||| |||| ||| |||||||||| ||||||    
T  11912259 caggaattaacctcaagacactaaacaaagaagaaaaataagaaaaagtacaaaaatggcagaagcatcaattcactcgccttcaactcgcaatggcgag 11912358  T
Q  646 tgctgaaaagcgag-tagaggcaggaagacctatttactcgc 686  Q
    |||||||| |||||  ||||||| ||||||| ||| ||||||    
T  11912359 tgctgaaaggcgagcaagaggcatgaagaccaattcactcgc 11912400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 685 - 745
Target Start/End: Complemental strand, 9316903 - 9316843
Alignment:
Q  685 gccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgag 745  Q
    |||||||  |||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  9316903 gccatggtgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgag 9316843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 559
Target Start/End: Complemental strand, 21818745 - 21818594
Alignment:
Q  409 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 508  Q
    |||||||||||| |||| |||| |||| |||||  | ||| | ||| |||||||||| | | ||||||||||||||||||||| |||| ||| |  || |    
T  21818745 tgataagtgccaaaaagtagtttattcaatgttt-atttacgtcacatttgttacttgtttcacaagttatttagggaaaagccgagagaaa-agtgata 21818648  T
Q  509 attgccctattacgc---tttatatctttctatacccctttgtacaggaattga 559  Q
    |||||||||||||||   |||||||||| || ||||| ||||| ||||||||||    
T  21818647 attgccctattacgcttttttatatcttactctacccatttgtgcaggaattga 21818594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 508 - 673
Target Start/End: Complemental strand, 23252557 - 23252382
Alignment:
Q  508 aattgccctattacgctttatat--ctttctatacccctttgtacaggaattgacctcaagacgcgaaacaaagaagaaaatc-------aaaaaggaca 598  Q
    |||||||||||||| ||||||||  ||| || ||||| ||| | |||||||| |||||||||| | |||||||||||||||         |||||| |||    
T  23252557 aattgccctattacactttatatatcttactctacccttttatgcaggaattaacctcaagacactaaacaaagaagaaaaattaacaagaaaaagtaca 23252458  T
Q  599 aaag-gacataggcatcaattaactctcctccaactcgcaacggcgagtgctgaaaagcgagtagaggcaggaaga 673  Q
    |||  | || | ||||||||| |||| ||| |||||||||  |||||||||||||||||||| |||||||| ||||    
T  23252457 aaaatggcagaagcatcaattcactcgccttcaactcgcagtggcgagtgctgaaaagcgagcagaggcagaaaga 23252382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 508 - 668
Target Start/End: Complemental strand, 44917619 - 44917453
Alignment:
Q  508 aattgccctattacgctttatat--ctttctatacccctttgtacaggaattgacctcaagacgcgaaacaaagaagaaaa----tcaaaaaggacaaaa 601  Q
    |||||||||||||||||||||||  ||| || ||||| ||||| ||||||||  ||||||||| | |||||||||||||||      |||||| |||||     
T  44917619 aattgccctattacgctttatatatcttactctacccttttgtgcaggaattagcctcaagacactaaacaaagaagaaaaatagaaaaaaagtacaaag 44917520  T
Q  602 ggacataggcatcaattaactctcctccaactcgcaacggcgagtgctgaaaagcgagtagaggcag 668  Q
     | || | ||||||||| ||||  ||| ||||||||  |||||||||| |||||| || ||||||||    
T  44917519 aggcagaagcatcaattcactcgtctctaactcgcagtggcgagtgcttaaaagctagcagaggcag 44917453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 409 - 526
Target Start/End: Complemental strand, 43365524 - 43365407
Alignment:
Q  409 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 508  Q
    |||||| ||| |||||| |||||||| ||||| ||| ||||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||    
T  43365524 tgataaatgctagaaagtagttaatttcatgtgacatttaaggcacttttgttacttatcttacaagttagttagggaaaaaccgagaaaaagatgaaca 43365425  T
Q  509 attgccctattacgcttt 526  Q
    ||||||||||||||||||    
T  43365424 attgccctattacgcttt 43365407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 409 - 582
Target Start/End: Complemental strand, 9704410 - 9704237
Alignment:
Q  409 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 508  Q
    |||||||| |||||||| |||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||| ||      
T  9704410 tgataagttccagaaagtagttaatttcatgttacatttaaggcacttttgttacttgtcttacaagttatttaggaaaaagccgagaaaaagat-gatt 9704312  T
Q  509 attgccctattacgcttta--tatctttctatacccctttgtacaggaattgacctcaagacgcgaaacaaagaag 582  Q
    |||||||||||||||||||  || ||| || ||||| ||||| || ||||||| || ||||| | |||||||||||    
T  9704311 attgccctattacgctttatttaccttactctacccatttgtgca-gaattgaacttaagacaccaaacaaagaag 9704237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 685 - 745
Target Start/End: Complemental strand, 43365214 - 43365154
Alignment:
Q  685 gccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgag 745  Q
    |||||||| |||| || || |||||||||||||||  |||||||||||||||| |||||||    
T  43365214 gccatggcgagttcaaagcaagctaacttgccatggcgagcaaaattactcgccaggcgag 43365154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 409 - 559
Target Start/End: Original strand, 9334137 - 9334289
Alignment:
Q  409 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 508  Q
    ||||||||||||||||| |||||||  ||||||||| ||||| ||| |||||||||| |||||||||||| |||||||||||  |||||||||||| | |    
T  9334137 tgataagtgccagaaagtagttaatatcatgttacatttaaggcacatttgttacttgtcttacaagttagttagggaaaaggcgagaaaaagatgaaaa 9334236  T
Q  509 attgccctattacgc--tttatatctttctatacccctttgtacaggaattga 559  Q
    |||||||||||||||  |||||||||| || || || ||||| ||||||||||    
T  9334237 attgccctattacgctttttatatcttactctatccatttgtgcaggaattga 9334289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 516 - 687
Target Start/End: Original strand, 12504802 - 12504978
Alignment:
Q  516 tattacgctttatat--ctttctatacccctttgtacaggaattgacctcaagacgcgaaacaaagaagaaaatcaa-aaagg-acaaaaggacataggc 611  Q
    |||||||||||||||  ||| || ||||| ||||| || |||||||||||||||| | ||||||||||||||| ||| ||||| |||||| | || |  |    
T  12504802 tattacgctttatatatcttactctacccttttgtgcatgaattgacctcaagacactaaacaaagaagaaaaacaagaaaggtacaaaaaggcagaaac 12504901  T
Q  612 atcaattaactctcctccaactcgcaacggcgagtgctg-aaaagcgagtagaggcaggaagacctatttactcgcc 687  Q
    ||||||| |||| || |||| ||||||||||||| || | ||||||||| |||||||||||||||||||||||||||    
T  12504902 atcaattcactcgccaccaattcgcaacggcgagagcagcaaaagcgagcagaggcaggaagacctatttactcgcc 12504978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 685 - 745
Target Start/End: Original strand, 9334427 - 9334487
Alignment:
Q  685 gccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgag 745  Q
    |||||||| |||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  9334427 gccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgag 9334487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 406 - 559
Target Start/End: Complemental strand, 20900591 - 20900438
Alignment:
Q  406 cgctgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatgg 505  Q
    ||||||||||||||| |||| ||||||||| |||||  | ||| |  || |||||||||| | | ||||||||| ||||||||||| |||| ||| |  |    
T  20900591 cgctgataagtgccaaaaagtagttaattcaatgttt-atttatggtacgtttgttacttgtttcacaagttatgtagggaaaagccgagagaaa-agtg 20900494  T
Q  506 acaattgccctattacgc--tttatatctttctatacccctttgtacaggaattga 559  Q
    | ||||||||||||||||  |||||||||| || ||||| |||||  |||||||||    
T  20900493 ataattgccctattacgctttttatatcttactctacccatttgtgtaggaattga 20900438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 409 - 489
Target Start/End: Complemental strand, 37336511 - 37336431
Alignment:
Q  409 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaa 489  Q
    |||||||||  |||||| |||||| | ||||||| | ||||| |||||||||||||| | |||||||||||||| ||||||    
T  37336511 tgataagtgttagaaagtagttaaattcatgttatatttaaggcacttttgttacttgttttacaagttatttaaggaaaa 37336431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 688
Target Start/End: Original strand, 12504972 - 12505039
Alignment:
Q  620 actctcctccaactcgcaacggcgagt-gctgaaaagcgagtagaggcaggaagacctatttactcgcca 688  Q
    |||| |||||||||||||| | ||||| ||  ||||||||| ||||||||||||||||||||||||||||    
T  12504972 actcgcctccaactcgcaatgacgagtagc--aaaagcgagcagaggcaggaagacctatttactcgcca 12505039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 591
Target Start/End: Original strand, 30579191 - 30579314
Alignment:
Q  471 acaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatctttctatacccctttgtacaggaattg-acctcaaga 567  Q
    ||||||||||||||||||||| |||| |||  || | ||||||||||||||| ||||  |||||| || ||  | ||||| ||||||||| |  ||||||    
T  30579191 acaagttatttagggaaaagccgagagaaaagtgaataattgccctattacgttttatgtatcttactttattcatttgtgcaggaattgaatgtcaaga 30579290  T
Q  568 cgcgaaacaaagaagaaaatcaaa 591  Q
    | | || |||||||||||||||||    
T  30579291 caccaagcaaagaagaaaatcaaa 30579314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 9e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 429 - 559
Target Start/End: Complemental strand, 18766924 - 18766792
Alignment:
Q  429 ttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgc--ttt 526  Q
    |||||| ||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||  |||||||||||| ||||||||||||||| ||  |||    
T  18766924 ttaatttcatgttacatttaaggcacttttgttacttgtcttacaagttagttagggaaaagtcgagaaaaagatgaacaattgccctattatgcttttt 18766825  T
Q  527 atatctttctatacccctttgtacaggaattga 559  Q
    ||||||| || || || ||||| ||||||||||    
T  18766824 atatcttactctatccatttgtgcaggaattga 18766792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 685 - 745
Target Start/End: Complemental strand, 18766654 - 18766594
Alignment:
Q  685 gccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgag 745  Q
    |||||||| |||| ||||||||||||| |||||||  ||||||||||||||||||||||||    
T  18766654 gccatggcgagttcaaggcgagctaacgtgccatggcgagcaaaattactcgcgaggcgag 18766594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 530
Target Start/End: Complemental strand, 9847742 - 9847683
Alignment:
Q  471 acaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgctttatat 530  Q
    ||||||||||||||||||||| |||| |||  || | |||||||||||||| ||||||||    
T  9847742 acaagttatttagggaaaagccgagataaaagtgaataattgccctattacactttatat 9847683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 559
Target Start/End: Original strand, 14064 - 14215
Alignment:
Q  409 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 508  Q
    |||||||||||| |||| |||| |||| |||||  | ||| | ||| |||||||||| | | ||||||||||||||||||||| |||| ||| |  || |    
T  14064 tgataagtgccaaaaagtagtttattcaatgttt-atttacgtcacatttgttacttgtttcacaagttatttagggaaaagccgagagaaa-agtgata 14161  T
Q  509 attgccctattacgc---tttatatctttctatacccctttgtacaggaattga 559  Q
    |||||||||||||||   |||||||||| || ||||| ||||| ||||||||||    
T  14162 attgccctattacgcttttttatatcttactctacccatttgtgcaggaattga 14215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 452 - 558
Target Start/End: Complemental strand, 4973123 - 4973016
Alignment:
Q  452 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgc--tttatatctttctatacccctttgta 549  Q
    |||||||||||||| | ||||||||||| |||||||||||  |||||| | || |||| || ||||||| ||  |||||||||| || |||||| |||||    
T  4973123 cacttttgttacttgttttacaagttatctagggaaaagccaagaaaatg-tgaacaaatgtcctattatgctttttatatcttactctaccccattgta 4973025  T
Q  550 caggaattg 558  Q
    |||||||||    
T  4973024 caggaattg 4973016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 452 - 568
Target Start/End: Original strand, 11357202 - 11357319
Alignment:
Q  452 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatctttctatacccctttgta 549  Q
    |||||||||||||| | |||||||||||| |||||||||| |||||| | |  ||  |||||||| ||||||||||  |||||| ||  |||| |||||     
T  11357202 cacttttgttacttgttttacaagttattgagggaaaagccgagaaata-agtgattattgcccttttacgctttatctatcttacttcacccatttgtg 11357300  T
Q  550 caggaattgacctcaagac 568  Q
    ||||| |||| ||||||||    
T  11357301 caggatttgaactcaagac 11357319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 36020726 - 36020772
Alignment:
Q  452 cacttttgttacttatcttacaagttatttagggaaaagctgagaaa 498  Q
    |||||||||||||| | || ||||||||| |||||||||||||||||    
T  36020726 cacttttgttacttgttttgcaagttattaagggaaaagctgagaaa 36020772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 482
Target Start/End: Original strand, 22196895 - 22196967
Alignment:
Q  410 gataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttattta 482  Q
    ||||||||||| |||  ||||||||  |||||| | || ||||||||||||||||| | ||||||||||||||    
T  22196895 gataagtgccataaattagttaattatatgttatattttagacacttttgttacttgttttacaagttattta 22196967  T

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Target: scaffold0510 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 2256 - 2210
Alignment:
Q  452 cacttttgttacttatcttacaagttatttagggaaaagctgagaaa 498  Q
    |||||||||||||| | || ||||||||| |||||||||||||||||    
T  2256 cacttttgttacttgttttgcaagttattgagggaaaagctgagaaa 2210  T

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