View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13217_low_21 (Length: 252)
Name: NF13217_low_21
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_low_21 |
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| [»] scaffold1005 (1 HSPs) |
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Alignment Details
Target: scaffold1005 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold1005
Description:
Target: scaffold1005; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 1918 - 2015
Alignment:
| Q |
147 |
aacagccaataacattaaaacaaacaattccttgagaaaagaaattgctgttgcagaaaaacggtacaaatttcccagcgccaaagcataggaacaaa |
244 |
Q |
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| T |
1918 |
aacagccaataacattaaaacaaacaattccatgagaaaggaaattgctgttgcacaaaaacggtacaaatttccaagcgccaaagcataggaacaaa |
2015 |
T |
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Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 11515997 - 11516094
Alignment:
| Q |
147 |
aacagccaataacattaaaacaaacaattccttgagaaaagaaattgctgttgcagaaaaacggtacaaatttcccagcgccaaagcataggaacaaa |
244 |
Q |
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| T |
11515997 |
aacagccaataacattaaaacaaacaattccatgagaaaggaaattgctgttgcacaaaaacggtacaaatttccaagcgccaaagcataggaacaaa |
11516094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 11523399 - 11523496
Alignment:
| Q |
147 |
aacagccaataacattaaaacaaacaattccttgagaaaagaaattgctgttgcagaaaaacggtacaaatttcccagcgccaaagcataggaacaaa |
244 |
Q |
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| T |
11523399 |
aacagccaataacattaaaacaaacaattccatgagaaaggaaattgctgttgcacaaaaacggtacaaatttccaagcgccaaagcataggaacaaa |
11523496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 11530811 - 11530908
Alignment:
| Q |
147 |
aacagccaataacattaaaacaaacaattccttgagaaaagaaattgctgttgcagaaaaacggtacaaatttcccagcgccaaagcataggaacaaa |
244 |
Q |
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| T |
11530811 |
aacagccaataacattaaaacaaacaattccatgagaaaggaaattgctgttgcacaaaaacggtacaaatttccaagcgccaaagcataggaacaaa |
11530908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 11538280 - 11538377
Alignment:
| Q |
147 |
aacagccaataacattaaaacaaacaattccttgagaaaagaaattgctgttgcagaaaaacggtacaaatttcccagcgccaaagcataggaacaaa |
244 |
Q |
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| T |
11538280 |
aacagccaataacattaaaacaaacaattccatgagaaaggaaattgttgttgcacaaaaacggtacaaatttcccagcgccaaagcataggaacaaa |
11538377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 11501228 - 11501325
Alignment:
| Q |
147 |
aacagccaataacattaaaacaaacaattccttgagaaaagaaattgctgttgcagaaaaacggtacaaatttcccagcgccaaagcataggaacaaa |
244 |
Q |
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| T |
11501228 |
aacagccaataacattaaaacaaacaattccatgagaaaggaaattgctgttgcacaaaaacggtacaaatttccaagcgccaaagtataggaacaaa |
11501325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 11508625 - 11508722
Alignment:
| Q |
147 |
aacagccaataacattaaaacaaacaattccttgagaaaagaaattgctgttgcagaaaaacggtacaaatttcccagcgccaaagcataggaacaaa |
244 |
Q |
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| T |
11508625 |
aacagccaataacattaaaacaaacaattccatgagaaaggaaattgctgttgcacaaaaacggtacaaatttccaggcgccaaagcataggaacaaa |
11508722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 11561762 - 11561859
Alignment:
| Q |
147 |
aacagccaataacattaaaacaaacaattccttgagaaaagaaattgctgttgcagaaaaacggtacaaatttcccagcgccaaagcataggaacaaa |
244 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
11561762 |
aacagccaataacattaaaacaaacaattccatgagaaaggaaattgttgttgcacaaaaacggtacaaatttccaagcgctaaagcataggaacaaa |
11561859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 28781611 - 28781654
Alignment:
| Q |
13 |
aatatccttagagagaaggaaatagaaaggatgatgtgataaat |
56 |
Q |
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|||||| |||||||||||||||| ||||||||| |||||||||| |
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| T |
28781611 |
aatatctttagagagaaggaaattgaaaggatggtgtgataaat |
28781654 |
T |
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