View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13217_low_27 (Length: 236)
Name: NF13217_low_27
Description: NF13217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13217_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 11562062 - 11561931
Alignment:
| Q |
21 |
agtgtcttcttagatagcttgaagagggcccttctgttggcgtggtttttcagggtgaggttatggctgnnnnnnngtcatgttagatgtccatgtattg |
120 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
11562062 |
agtgtcttcttagatagcttggagagggcccttctgttggcgtggtttttcagggtgaggttatggttgttttttggtcatgttagatgtccatgtattg |
11561963 |
T |
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| Q |
121 |
gtatgttatataggctaatgttttagtagcagtt |
154 |
Q |
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| T |
11561962 |
gtatg--ctataggctaatgttttagaagcagtt |
11561931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 11501528 - 11501400
Alignment:
| Q |
21 |
agtgtcttcttagatagcttgaagagggcccttctgttggcgtggtttttcagggtgaggttatggctgnnnnnnngtcatgttagatgtccatgtattg |
120 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
11501528 |
agtgtcttattagatagcttggagagggcccttctgttggcgtggtttttcagggtgaggttatggttgttttttggtcatgttagatgtccatgtattg |
11501429 |
T |
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| Q |
121 |
gtatgttatataggctaatgttttagtagca |
151 |
Q |
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||||| |||||||||||||||||| |||| |
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| T |
11501428 |
gtatg--ctataggctaatgttttagaagca |
11501400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 11508925 - 11508797
Alignment:
| Q |
21 |
agtgtcttcttagatagcttgaagagggcccttctgttggcgtggtttttcagggtgaggttatggctgnnnnnnngtcatgttagatgtccatgtattg |
120 |
Q |
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| T |
11508925 |
agtgtcttattagatagcttggagagggcccttctgttggcgtggtttttcagggtgaggttatggttgttttttggtcatgttagatgtccatgtattg |
11508826 |
T |
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| Q |
121 |
gtatgttatataggctaatgttttagtagca |
151 |
Q |
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||||| |||||||||||||||||| |||| |
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| T |
11508825 |
gtatg--ctataggctaatgttttagaagca |
11508797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 11516297 - 11516169
Alignment:
| Q |
21 |
agtgtcttcttagatagcttgaagagggcccttctgttggcgtggtttttcagggtgaggttatggctgnnnnnnngtcatgttagatgtccatgtattg |
120 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
11516297 |
agtgtcttattagatagcttggagagggcccttctgttggcgtggtttttcagggtgaggttatggttgttttttggtcatgttagatgtccatgtattg |
11516198 |
T |
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| Q |
121 |
gtatgttatataggctaatgttttagtagca |
151 |
Q |
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||||| |||||||||||||||||| |||| |
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| T |
11516197 |
gtatg--ctataggctaatgttttagaagca |
11516169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 11523699 - 11523571
Alignment:
| Q |
21 |
agtgtcttcttagatagcttgaagagggcccttctgttggcgtggtttttcagggtgaggttatggctgnnnnnnngtcatgttagatgtccatgtattg |
120 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
11523699 |
agtgtcttattagatagcttggagagggcccttctgttggcgtggtttttcagggtgaggttatggttgttttttggtcatgttagatgtccatgtattg |
11523600 |
T |
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| Q |
121 |
gtatgttatataggctaatgttttagtagca |
151 |
Q |
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||||| |||||||||||||||||| |||| |
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| T |
11523599 |
gtatg--ctataggctaatgttttagaagca |
11523571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 11531111 - 11530983
Alignment:
| Q |
21 |
agtgtcttcttagatagcttgaagagggcccttctgttggcgtggtttttcagggtgaggttatggctgnnnnnnngtcatgttagatgtccatgtattg |
120 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
11531111 |
agtgtcttattagatagcttggagagggcccttctgttggcgtggtttttcagggtgaggttatggttgttttttggtcatgttagatgtccatgtattg |
11531012 |
T |
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| Q |
121 |
gtatgttatataggctaatgttttagtagca |
151 |
Q |
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||||| |||||||||||||||||| |||| |
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| T |
11531011 |
gtatg--ctataggctaatgttttagaagca |
11530983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 11538582 - 11538447
Alignment:
| Q |
21 |
agtgtcttcttagatagcttgaagagggcccttct---gttggcgtggtttttcagggtgaggttatggctgnnnnnnngtcatgttagatgtccatgta |
117 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
11538582 |
agtgtcttcttagatagcttggagagggcccttctagtgttggcgtggtttttcagggtgaggttatggttgttttttggtcatgttagatgtccatgta |
11538483 |
T |
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| Q |
118 |
ttggtatgttatataggctaatgttttagtagcagttg |
155 |
Q |
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|||||||| |||||||||||||||||| |||||||| |
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| T |
11538482 |
ttggtatg--ctataggctaatgttttagaagcagttg |
11538447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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